Bug#1063358: c-blosc2 tests fail with bus errors on armhf

Control: tags -1 + patch fixed-upstream This was fixed in Ubuntu and the patch forwarded upstream; https://github.com/Blosc/c-blosc2/pull/588 -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1070746: Bug#1065309: transition: gnat (12 -> 13 + time_t64)

Hi Rafael and Nicolas On Wed, 8 May 2024 at 19:58, Rafael Laboissière wrote: > I will soon upload version 5.15.0+dfsg2-11, with the fix proposed by > Nicolas in Bug#1070746. Thanks for the quick turnaround! gnat 13 has migrated. Regards Graham -- debian-science-maintainers mailing list

Bug#1070437: skimage: FTBFS with Python 3.12 as default

Source: skimage Version: 0.22.0-3 Severity: important Tags: ftbfs patch User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer skimage FTBFS with Python 3.12 as the default version (i.e. with python3-defaults/3.12.1-1 from experimental). Please see the patch below to use the

Bug#1070201: scikit-learn: autopkgtest regression on i386 with NumPy 1.26

Source: scikit-learn Version: 1.4.1.post1+dfsg-1 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer scikit-learn's autopkgtest regresses on i386 when tested with numpy 1.26 [1]. I've copied what I hope is the relevant part of the log below. Regards Graham

Bug#1066310: dx: FTBFS: _compparse.c:51:17: error: implicit declaration of function ‘_dxfcclex’ [-Werror=implicit-function-declaration]

Hi Bo > I have attached one debdiff and it can be built with it. So could you > upload it with it? The attached patch just seems to be papering over the problem, so I would rather not. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1067234: symfit: autopkgtest regression with NumPy 1.26

with a team upload and I will proceed. As a bonus, I attach a patch that fixes several SyntaxWarnings that occur with Python 3.12. Regards Graham Description: Fix several SyntaxWarnings Use raw strings to avoid invalid escape sequence Author: Graham Inggs Last-Update: 2024-04-06 --- a/symfit/core

Bug#1068240: nauty: autopkgtest regression in testing

Source: nauty Version: 2.8.8+ds-2 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer Sometime around 2024-01-23, nauty's autopkgtest regressed in testing [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1]

Bug#1068104: pandas: FTBFS on 32-bit architectures with -D_TIME_BITS=64

Source: pandas Version: 2.1.4+dfsg-6 Severity: serious Tags: ftbfs patch Hi Maintainer pandas FTBFS on 32-bit architectures with -D_TIME_BITS=64 (e.g. armel and armhf), due to tests expected to fail, now passing. I've copied what I hope are the relevant parts of the log below. The following is

Bug#1066978: mathgl: new autopkgtest fails on s390x

Source: mathgl Version: 8.0.1-7 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer It seems mathgl 8.0.1-7 introduced a new autopkgtest. That's great! However, it fails on s390x [1]. I've copied what I hope is the relevant part of the log below. Regards

Bug#1065989: tulip: Please drop dependencies on python3-distutils

Source: tulip Version: 5.4.0+dfsg-3 Severity: important Tags: ftbfs trixie sid User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package

Bug#1065968: sympy: Please drop dependencies on python3-distutils

Source: sympy Version: 1.12-7 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will soon be dropped

Bug#1065960: spopt: Please drop dependencies on python3-distutils

Source: spopt Version: 0.5.0-4 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will soon be

Bug#1065955: slepc4py: Please drop dependencies on python3-distutils

Source: slepc4py Version: 3.19.2-3 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will soon be

Bug#1065939: python-thinc: Please drop dependencies on python3-distutils

Source: python-thinc Version: 8.2.2-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will soon be dropped

Bug#1065932: python-param: Please drop dependencies on python3-distutils

Source: python-param Version: 1.12.3-1 Severity: important Tags: ftbfs trixie sid User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package

Bug#1065916: petsc4py: Please drop dependencies on python3-distutils

Source: petsc4py Version: 3.19.6-6 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will soon be

Bug#1065914: opm-simulators: Please drop dependencies on python3-distutils

Source: opm-simulators Version: 2023.04+ds-1 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will

Bug#1065913: opm-common: Please drop dependencies on python3-distutils

Source: opm-common Version: 2023.04+ds-5 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will soon

Bug#1065886: keras-preprocessing: Please drop dependencies on python3-distutils

Source: keras-preprocessing Version: 1.1.0+ds-1 Severity: important Tags: ftbfs trixie sid User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary

Bug#1065885: keras-applications: Please drop dependencies on python3-distutils

Source: keras-applications Version: 1.0.8+ds-1 Severity: important Tags: ftbfs trixie sid User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary

Bug#1065884: keras: Please drop dependencies on python3-distutils

Source: keras Version: 2.3.1+dfsg2-1 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer This package has dependencies, build-dependencies and/or autopkgtest dependencies on python3-distutils. The python3-distutils binary package will soon be

Bug#1064384: pandas: Build-Depends on python3-tables, no longer available everywhere

Source: pandas Version: 2.1.4+dfsg-5 Severity: important Tags: patch Hi Maintainer pandas has a build-dependency on python3-tables, but since 3.9.2-1 it is no longer available for all architectures, see #1061661 [1]. This was worked around in Ubuntu by moving python3-tables to

Bug#1061063: armhf: h5py's tests expose unaligned memory accesses during the build

Control: severity -1 important Control: tags -1 + patch hickle has been auto-removed from testing due to #1060804. I'm lowering the severity so that h5py can migrate. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1063227: octomap: NMU diff for 64-bit time_t transition

=medium + + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Mon, 05 Feb 2024 18:45:29 + + octomap (1.9.7+dfsg-3) unstable; urgency=medium * Move to unstable diff -Nru octomap-1.9.7+dfsg/debian/control octomap-1.9.7+dfsg/debian/control

Bug#1063169: netgen: NMU diff for 64-bit time_t transition

-2.1) experimental; urgency=medium + + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Mon, 05 Feb 2024 15:18:42 + + netgen (6.2.2305+dfsg1-2) unstable; urgency=medium * Team upload. diff -Nru netgen-6.2.2305+dfsg1/debian/control netgen

Bug#1063167: neartree: NMU diff for 64-bit time_t transition

-2.1) experimental; urgency=medium + + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Mon, 05 Feb 2024 15:07:49 + + neartree (5.1.1+dfsg1-2) unstable; urgency=medium * Team upload. diff -Nru neartree-5.1.1+dfsg1/debian/control neartree

Bug#1063164: ncrystal: NMU diff for 64-bit time_t transition

=medium + + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Mon, 05 Feb 2024 15:00:14 + + ncrystal (3.4.1+ds1-1) unstable; urgency=medium * New upstream release. diff -Nru ncrystal-3.4.1+ds1/debian/control ncrystal-3.4.1+ds1/debian/control

Bug#1063152: mumps: NMU diff for 64-bit time_t transition

. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Mon, 05 Feb 2024 12:25:31 + + mumps (5.6.2-2) unstable; urgency=medium * Team upload diff -Nru mumps-5.6.2/debian/control mumps-5.6.2/debian/control --- mumps-5.6.2/debian/control 2023-11-29 13:54:48.0

Bug#1062952: mrcal: NMU diff for 64-bit time_t transition

for 64-bit time_t transition. + + -- Graham Inggs Sun, 04 Feb 2024 06:27:10 + + mrcal (2.3-4) unstable; urgency=medium * Explicitly linking with libsuitesparseconfig. Adds explicit dependency diff -Nru mrcal-2.3/debian/control mrcal-2.3/debian/control --- mrcal-2.3/debian/control2023

Bug#1062862: mbtserver: NMU diff for 64-bit time_t transition

+ + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Sat, 03 Feb 2024 20:33:08 + + mbtserver (0.14-2) unstable; urgency=medium * Upload to unstable diff -Nru mbtserver-0.14/debian/control mbtserver-0.14/debian/control --- mbtserver-0.14/debian

Bug#1062860: mbt: NMU diff for 64-bit time_t transition

time_t transition. + + -- Graham Inggs Sat, 03 Feb 2024 20:31:45 + + mbt (3.6-3) unstable; urgency=medium * Upload to unstable diff -Nru mbt-3.6/debian/control mbt-3.6/debian/control --- mbt-3.6/debian/control 2020-04-21 19:07:22.0 + +++ mbt-3.6/debian/control 2024-02

Bug#1062853: mathgl: NMU diff for 64-bit time_t transition

upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Sat, 03 Feb 2024 20:21:23 + + mathgl (8.0.1-5) unstable; urgency=medium * d/control: diff -Nru mathgl-8.0.1/debian/control mathgl-8.0.1/debian/control --- mathgl-8.0.1/debian/control 2024-01-07 19:41

Bug#1062514: lammps: NMU diff for 64-bit time_t transition

libraries for 64-bit time_t transition. + + -- Graham Inggs Thu, 01 Feb 2024 17:54:11 + + lammps (20231121+dfsg-4) unstable; urgency=medium * Team upload. diff -Nru lammps-20231121+dfsg/debian/control lammps-20231121+dfsg/debian/control --- lammps-20231121+dfsg/debian/control 2023-12-31

Bug#1062458: irstlm: NMU diff for 64-bit time_t transition

. + + -- Graham Inggs Thu, 01 Feb 2024 15:48:24 + + irstlm (6.00.05-4) unstable; urgency=medium * Remove MIA uploader Koichi Akabe . Closes: #864577 diff -Nru irstlm-6.00.05/debian/control irstlm-6.00.05/debian/control --- irstlm-6.00.05/debian/control 2023-09-19 20:53:34.0 +

Bug#1062454: inventor: NMU diff for 64-bit time_t transition

. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Thu, 01 Feb 2024 15:27:47 + + inventor (2.1.5-10+dfsg-2) unstable; urgency=medium [ Steve Robbins ] diff -Nru inventor-2.1.5-10+dfsg/debian/control inventor-2.1.5-10+dfsg/debian/control --- inventor-2.1.5-10+dfsg

Bug#1062440: ignition-fuel-tools: NMU diff for 64-bit time_t transition

) experimental; urgency=medium + + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Thu, 01 Feb 2024 14:41:17 + + ignition-fuel-tools (7.0.0+ds-3) unstable; urgency=medium * Ignore more tests that needs network diff -Nru ignition-fuel-tools

Bug#1062439: ignition-common: NMU diff for 64-bit time_t transition

+ + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Thu, 01 Feb 2024 14:38:31 + + ignition-common (4.7.0+ds2-2) unstable; urgency=medium * Require ignition-math 6.12.0 for gz transition diff -Nru ignition-common-4.7.0+ds2/debian/control

Bug#1062198: gvars3: NMU diff for 64-bit time_t transition

~git20220105194034.62f5a78-4.1) experimental; urgency=medium + + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. + + -- Graham Inggs Wed, 31 Jan 2024 16:48:36 + + gvars3 (0.0~git20220105194034.62f5a78-4) unstable; urgency=medium * Fix some issues reported by lintian

Bug#1062124: graywolf: NMU diff for 64-bit time_t transition

. + + -- Graham Inggs Wed, 31 Jan 2024 12:47:01 + + graywolf (0.1.6-4) unstable; urgency=medium * Fix build with GCC-10 by preventing multiple defined signals diff -Nru graywolf-0.1.6/debian/control graywolf-0.1.6/debian/control --- graywolf-0.1.6/debian/control 2020-10-13 09:33

Bug#1061604: cctbx: autopkgtest regression

Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-3 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer The cctbx's autopkgtest are failing [1], preventing migration. I've copied what I hope is the relevant part of the log below. I suspect there are missing

Bug#1061603: openturns: FTBFS with Python 3.12 as default

Source: openturns Version: 1.21.1-4 Severity: important Tags: ftbfs patch User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer openturns FTBFS with Python 3.12 as the default version (i.e. with python3-defaults/3.12.1-1 from experimental). I've copied what I hope is the

Bug#1043240: transition: pandas 1.5 -> 2.1

Hi On Tue, 23 Jan 2024 at 14:38, Julian Gilbey wrote: > We're nearly there (the transition page says it's 99% done), and when > this transition is complete, then python3-defaults 3.11.6+ will be > able to migrate to testing. python3-defaults/3.11.6-1 with Python 3.12 as a supported version is

Bug#1056530: spyder's autopkg tests fail with Python 3.12

Still failing with spyder/5.5.0+ds-2 [1]. [1] https://ci.debian.net/packages/s/spyder/testing/amd64/ -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#1060318: silx: autopkgtest failure with Python 3.12

Source: silx Version: 1.1.2+dfsg-2 Severity: serious User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer silx's autopkgtests fail with Python 3.12 [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1]

Bug#1060276: pygalmesh: autopkgtest regression in testing

Source: pygalmesh Version: 0.10.6-1 Severity: serious Tags: sid trixie User: debian...@lists.debian.org Usertags: regression Hi Maintainer Sometime between 2023-11-08 and 2023-12-06, pygalmesh's autopkgtests started to fail in testing [1][2]. I've copied what I hope is the relevant part of the

Bug#1060063: pysph: autopkgtest failure with Python 3.12

Source: pysph Version: 1.0~b1-7 Severity: serious User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer pysph's autopkgtests fail with Python 3.12 [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1]

Bug#1058488: spopt: please (temporarily) drop python3-numba dependencies

Source: spopt Version: 0.5.0-4 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expected

Bug#1058486: python-xarray: please (temporarily) drop python3-numba dependencies

Source: python-xarray Version: 2023.11.0-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support

Bug#1058476: libpysal: please (temporarily) drop python3-numba dependencies

Source: libpysal Version: 4.9.2-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is

Bug#1058471: esda: please (temporarily) drop python3-numba dependencies

Source: esda Version: 2.5.1-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expected

Bug#1058469: bioxtasraw: please (temporarily) drop python3-numba dependencies

Source: bioxtasraw Version: 2.2.1-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is

Bug#1058468: pandas: please (temporarily) drop python3-numba dependencies

Source: pandas Version: 1.5.3+dfsg-9 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is

Bug#1058039: cctbx: FTBFS with Python 3.12

Source: cctbx Version: 2022.9+ds2+~3.11.2+ds1-6 Severity: serious Tags: ftbfs sid trixie User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer cctbx FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards

Bug#1058027: pybj: FTBFS with Python 3.12

Source: pybj Version: 0.2.6-1 Severity: serious Tags: ftbfs sid trixie User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer pybj FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards Graham [1]

Bug#1055801: pandas: test failures with Python 3.12

Hi Rebecca On Thu, 7 Dec 2023 at 07:03, Rebecca N. Palmer wrote: > If they are all crashes rather than wrong answers (which I think they > are), I intend to ignore them for now to unblock this, but still > consider them bugs. That sounds good, thank you! Regards Graham --

Bug#1055801: pandas: test failures with Python 3.12

Control: severity -1 serious Control: tags -1 + ftbfs Hi Rebecca We've reached the point in adding Python 3.12 as a supported version [1] where these test failures should easily be reproducible in unstable now. Regards Graham [1] https://lists.debian.org/debian-python/2023/12/msg0.html --

Bug#1057383: mapclassify: Build-Depends on python3-libpysal which is not in testing

Source: mapclassify Version: 2.6.1-2 Severity: serious Tags: ftbfs Hi Maintainer mapclassify has a build-dependency on python3-libpysal which is no longer in testing. Please drop this build-dependency or help get python3-libpysal back into testing. In addition, if any of mapclassify's

Bug#1057081: mumps: FTBFS with LTO (link time optimization) enabled

Source: mumps Version: 5.6.2-1 Severity: minor User: debian-...@lists.debian.org Usertags: ftbfs-lto Hi Maintainer MUMPS currently fails to build (at least on the amd64 architecture) with link time optimizations enabled. For a background for LTO please see https://wiki.debian.org/ToolChain/LTO

Bug#1056132: skimage: FTBFS in testing and unstable

Source: skimage Version: 0.22.0-2 Severity: serious Tags: ftbfs Hi Maintainer As can be seen on reproducible builds [1], skimage currently FTBFS in testing and unstable. I've copied what I hope is the relevant part of the log below. Regards Graham [1]

Bug#1055844: pandas: Build-Depends on python3-xarray which is not in testing

Source: pandas Version: 1.5.3+dfsg-6 Severity: serious Tags: ftbfs Hi Maintainer pandas has a build-dependency on python3-xarray which is no longer in testing. Please drop this build-dependency or help get python3-xarray back into testing. Regards Graham -- debian-science-maintainers mailing

Bug#1055841: spyder-kernels: Build-Depends on python3-xarray which is not in testing

Source: spyder-kernels Version: 2.4.4-2 Severity: serious Tags: ftbfs Hi Maintainer spyder-kernels has a build-dependency on python3-xarray which is no longer in testing. Please drop this build-dependency or help get python3-xarray back into testing. Regards Graham --

Bug#1053700: python-xarray: autopkgtest regression on s390x

Source: python-xarray Version: 2023.09.0-2 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer There are new autopkgtest failures on s390x [1] which seem to be related to endianness, dtype('>M8[ns]') vs

Bug#1050176: pytables: FTBFS with 'nocheck' enabled

Source: pytables Version: 3.7.0-7 Tags: ftbfs Hi Maintainer As can be seen in recent build failures on m68k [1] and sh4 [2], pytables now FTBFS with 'nocheck' enabled. I've copied what I hope is the relevant part of the log below. Regards Graham [1]

Bug#1039067: [python-imageio] Please update to newer version

Hi Ole Please feel free to adopt python-imageio, it has not been touched by the uploader in six years. Regards Graham (who touched it last) -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Re: Maintainership of python-bitstring

Hi Scott Please free to adopt python-bitstring, it has not been touched by the uploader in seven years. Regards Graham (who touched it last) -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1038600: opm-simulators: missing build-dependency on bc

Source: opm-simulators Version: 2022.10+ds-2 Hi Maintainer As can be seen in recent build logs [1], opm-simulators 2022.10+ds-2 is missing a build-dependency on bc. I've copied what I hope is the relevant part of the log below. I can confirm that adding a build-dependency on bc allows the

Bug#1031964: libtrilinos-{globi,opti}pack-{13.2,dev} are empty

Hi Sorry for missing this. I noticed the empty packages (or at least, Lintian did!) while sponsoring the upload of 13.4.1-1 to experimental and fixed it there, but didn't think it important enough to fix for bookworm. If someone is willing to do a (team) upload, I'll be happy to unblock it.

Bug#1029701: scikit-learn Re: Are we still trying to do scipy 1.10, given transition freeze?

Hi Drew I think python3-scipy should declare a Breaks on python3-skbio less than the version in unstable (0.5.8-3). This should sort out the autopkgtest regressions of emperor, python-skbio itself, q2-metadata and q2-quality-control, which are all passing in unstable, and allow scipy and

Bug#1030653: pyemd: autopkgtest regression

Source: pyemd Version: 0.5.1.54.g802fa86-1 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer The autopkgtests of pyemd 0.5.1.54.g802fa86-1 are failing in testing [1] and unstable [2]. I've copied what I hope is the relevant part of the log below. Regards

Bug#1030379: numba: autopkgtest regression in testing

Source: numba Version: 0.56.4+dfsg-1 User: debian...@lists.debian.org Usertags: regression Hi Maintainer The autopkgtests of numba 0.56.4+dfsg-1 are currently regressed in testing [1]. Regards Graham [1] https://ci.debian.net/packages/n/numba/testing/amd64/ -- debian-science-maintainers

Bug#1022735: yade: FTBFS: ImportError: cannot import name 'PY3' from 'IPython.utils.py3compat' (/usr/lib/python3/dist-packages/IPython/utils/py3compat.py)

Control: reopen -1 yade 2022.01a-13 seems to fail in the same way -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#1030109: zfp: misses versioned dependencies on numpy

Source: zfp Version: 1.0.0-5 Severity: serious Tags: patch Hi Maintainer python3-zfpy misses a dependency on python3-numpy-abi and a versioned dependency on python3-numpy. The patch below should ensure these are automatically added correctly. Regards Graham --- a/debian/control +++

Bug#1030107: zfp: FTBFS with LTO (link time optimization) enabled

Package: src:zfp Version: 1.0.0-5 Severity: minor Tags: ftbfs fixed-upstream Forwarded: https://github.com/LLNL/zfp/issues/169 User: debian-...@lists.debian.org Usertags: ftbfs-lto This package currently fails to build (at least on the amd64 architecture) with link time optimizations enabled.

Bug#1029440: opm-common: FTBFS in bookworm (cc1plus: fatal error: [...]/builtin_pybind11.cpp: No such file or directory)

Control: severity -1 important Hi Markus, Santiago As opm-common is no longer in bookworm, this bug is currently unreproducible. Please feel free to raise the severity once opm-common has migrated and this bug is still reproducible. Regards Graham -- debian-science-maintainers mailing list

Bug#1022571: transition: pandas 1.3 -> 1.5

Hi Rebecca, Andreas On Wed, 25 Jan 2023 at 11:43, Andreas Tille wrote: > I was motivated for this patch by Diane's statement on the Debian Med > matrix channel that dask and dask.distributed are interconnected. If > the autopkgtest on Salsa CI[4] would have passed I would have uploaded. We

Bug#1022571: transition: pandas 1.3 -> 1.5

Hi Rebecca On Tue, 24 Jan 2023 at 00:16, Rebecca N. Palmer wrote: > The remaining autopkgtest failures blocking pandas are: > - dipy/amd64 and snakemake/i386 look like random flakiness: please retry > them. (I think DMs can't use the self-service interface.) Or for dipy, > see #1029533 for a

Bug#1029326: intel-mkl: autopkgtest regression in testing

Source: intel-mkl Version: 2020.4.304-3 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer Sometime in February 2021, intel-mkl's autopkgtests regressed in testing [1]. I've copied what I hope are relevant parts of the log below. Regards Graham [1]

Bug#1028983: yade: FTBFS with Python 3.11 as default version

Source: yade Version: 2022.01a-13 Severity: serious Tags: ftbfs patch User: debian-pyt...@lists.debian.org Usertags: python3.11 Hi Maintainer yade FTBFS with Python 3.11 as default version, although the build doesn't fail, it is mislinked against Python 3.10. I believe this is the relevant part

Bug#1027467: dyssol: FTBFS without network access

Control: reopen -1 Hi Anton It seems dyssol 1.1.0+ds1-2 still fails in the same way. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#1022571: transition: pandas 1.3 -> 1.5

Hi Rebecca On Fri, 6 Jan 2023 at 10:30, Rebecca N. Palmer wrote: > Should this go ahead before the freeze? I think yes if the new dask > works, but am open to disagreement. Please go ahead. With numpy 1:1.24.1-2 built on all release architectures, now is a good time. Regards Graham --

Bug#1027467: dyssol: FTBFS without network access

Source: dyssol Version: 1.1.0+ds1-1 Severity: serious Tags: ftbfs Hi Maintainer As can be seen on reproducible builds [1], dyssol 1.1.0+ds1-1 FTBFS without network access. I've copied what I hope is the relevant part of the log below. Regards Graham [1]

Bug#1015672: sundials: ftbfs with LTO (link time optimization) enabled

The failure described in this report was fixed in openSUSE by the attached patch. However, since 6.4.1, there's a new failure, already reported upstream [1]. [ 85%] Linking Fortran executable test_fsunlinsol_spfgmr_mod_serial cd /<>/debian/build/examples/sunlinsol/spfgmr/serial && /usr/bin/cmake

Bug#1024859: cctbx: (autopkgtest) needs update for python3.11: initialization of scitbx_linalg_ext raised unreported exception

Control: tags -1 + ftbfs With #1025658 fixed in boost1.74, the autopkgtest of cctbx now fails as follows: Testing dxtbx with python3.10: = test session starts == platform linux -- Python 3.10.9, pytest-7.1.2, pluggy-1.0.0+repack rootdir:

Bug#1026352: sundials: incomplete library transition?

Source: sundials Version: 6.4.1+dfsg1-1 Severity: serious User: debian-ci at lists.debian.org Usertags: regression Control: affects -1 src:deal.ii Hi Maintainer With the upload of sundials 6.4.1+dfsg1-1, the binary package libsundials-nvecparallel-mpi4 contains the files:

Bug#1004869: python-xarray: autopkgtest regression on i386

Control: reopen -1 The tests on i386 [1] still fail. There have been a couple of attempts at closing this bug, perhaps the i386 porters can help? [1] https://ci.debian.net/packages/p/python-xarray/unstable/i386/ -- debian-science-maintainers mailing list

Bug#1025311: solvespace: missing builds on mipsel and mips64el

Source: solvespace Version: 3.1+ds1-2 Severity: serious Tags: ftbfs Hi Maintainer The upload of solvespace 3.1+ds1-2 includes the change 'Drop s390x architecture due to test failures' [1], however the way this was done didn't only drop s390x, but also mipsel, mips64el, riscv64 and several other

Bug#1024498: pysph: FTBFS with Python 3.11 as a supported version

Source: pysph Version: 1.0~b1-3 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.11 Hi Maintainer pysph FTBFS during the recent rebuild adding Python 3.11 as a supported version [1]. I've copied what I hope is the relevant part of the log below. Regards

Bug#1024496: qiskit-terra: FTBFS with Python 3.11 as a supported version

Source: qiskit-terra Version: 0.12.0-4 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.11 Hi Maintainer qiskit-terra FTBFS during the recent rebuild adding Python 3.11 as a supported version [1]. I've copied what I hope is the relevant part of the log below.

Bug#1024313: amgcl: b-d on python3-all-dev, but not built for all supported Python3 versions

Source: amgcl Version: 1.4.3-2 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.11 python3-all-dev Hi Maintainer This package build-depends on python3-all-dev, but does not build extensions/libraries for all supported python3 versions. This is seen on the

Bug#1023978: scikit-learn: FTBFS with Python 3.11 as a supported version

Source: scikit-learn Version: 1.1.2+dfsg-7 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.11 Hi Maintainer scikit-learn FTBFS with Python 3.11 as a supported version. I've copied what I hope is the relevant part of the log below. Regards Graham

Bug#1019758: python-xarray: new autopkgtest regression on s390x

Control: tags -1 + patch Please consider applying the attached patch. Description: Allow test_indexes to pass on big-endian systems Forwarded: https://github.com/pydata/xarray/pull/7026 Bug-Debian: https://bugs.debian.org/1019758 Author: Graham Inggs Last-Update: 2022-09-11 --- a/xarray/tests

Bug#1019758: python-xarray: new autopkgtest regression on s390x

Source: python-xarray Version: 2022.06.0-1 Severity: serious Forwarded: https://github.com/pydata/xarray/pull/7026 User: debian...@lists.debian.org Usertags: regression Hi Maintainer Since the upload of python-xarray 2022.06.0-1, some new failing tests appeared on the big-endian s390x

Bug#1004870: python-xarray: autopkgtest regression on s390x

Control: reassign -1 src:python-xarray 0.21.0-1 Hopefully assigning back to src:python-xarray now. If you have reason to believe this issue is caused by a bug in pandas, then please file a bug against pandas with the relevant details and mark that it blocks this bug. --

Bug#1018939: zarr: autopkgtest regression on s390x

Source: zarr Version: 2.11.1+ds-1 X-Debbugs-CC: debian-s...@lists.debian.org Severity: important User: debian...@lists.debian.org Usertags: regression Hi Maintainer zarr's autopkgtests started failing on the big-endian s390x architecture [1], where they passed previously. I've copied what I

Bug#1004870: python-xarray: autopkgtest regression on s390x

Hi Rebecca, Alastair I triggered python-xarray's autopkgtest on s390x against pandas from experimental [1]. See the test results from 2022-08-29 12:40:12 UTC. I think the intended packages were tested together, based on seeing the following files fetched in the log: Get:28

Bug#1004869: python-xarray: autopkgtest regression on i386

Control: reopen -1 The tests on i386 [1] are still failing in the same way. [1] https://ci.debian.net/packages/p/python-xarray/unstable/i386/ -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net

Bug#1013939: python-xarray: autopkgtest regression: Left and right DataArray objects are not close

Hi Alastair On Sat, 13 Aug 2022 at 21:39, Paul Gevers wrote: > But the log [1] that was generated by the migration trial run has the > output below and the runs in unstable fail too (so no missing > *versioned* items). Please drop the unnecessary versioned build-dependency on python3-scipy to

Bug#1009772: armci-mpi: autopkgtest regression on s390x

Control: tags -1 + patch Hi Drew Upon further investigation, it appears that the failing test-armci-mpich has never passed on s390x, so the failure of this particular test is not a regression. In fact, the build-time tests fail in the same way, although those failures are ignored. Please

Bug#1003165: scikit-learn in unstable FTBFS on arm64, armel, armhf, i386, ppc64el and s390x

Hi Adrian On Wed, 16 Feb 2022 at 13:36, John Paul Adrian Glaubitz wrote: > On 2/16/22 12:33, Christian Kastner wrote: > >> Bus errors are normally easy to spot. Just run the code in question through > >> GDB and see where it crashes. Then look at the backtrace with the debug > >> symbols

Bug#1017053: closed by Drew Parsons (reply to dpars...@debian.org) (Re: Bug#1017053 fenics-dolfinx: FTBFS on mips64el)

Hi Drew > This is pmix bug#1017356, hopefully fixed in pmix 4.2.0~rc2-1 (not clear > why the pmix upload did not close the bug). I don't believe it is. The FTBFS on mips64el [1] started before the pmix upload. Regards Graham [1]

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