Your message dated Thu, 26 Jan 2023 16:34:50 +0000
with message-id <e1pl5d8-00afe8...@fasolo.debian.org>
and subject line Bug#1029693: fixed in python-bumps 0.9.0-3
has caused the Debian Bug report #1029693,
regarding python-bumps: tests fail with scipy 1.10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1029693: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1029693
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python-bumps
Version: 0.9.0-2
Severity: normal
scipy 1.10 is now available in experimental.
bumps fails debci tests using it.
We are considering uploading scipy 1.10 to unstable in order to
included it in the forthcoming stable release. If we proceed with
that, then this bug will become Severity: serious.
The errors are AttributeError: 'multivariate_normal_frozen' object has
no attribute 'cov'
A sample from the failing test log is
_____________________________________ test _____________________________________
def test():
"""check entropy estimates from known distributions"""
# entropy test is optional: don't test if sklearn is not installed
try:
import sklearn
except ImportError:
return
# Smoke test - do all the methods run in 1-D and 10-D?
_check_smoke(stats.norm(10, 8))
if hasattr(stats, 'multivariate_normal'):
_check_smoke(stats.multivariate_normal(cov=np.diag([1]*10)))
D = stats.norm(10, 8)
_check_entropy("N[100,8]", D, N=2000)
_check_entropy("N[100,8]", D, N=12000)
if hasattr(stats, 'multivariate_normal'):
D = stats.multivariate_normal(cov=np.diag([1, 12**2, 0.2**2]))
_check_entropy("MVN[1,12,0.2]", D)
D = stats.multivariate_normal(cov=np.diag([1]*10))
_check_entropy("MVN[1]*10", D, N=10000)
# Make sure zero-width dimensions return H = -inf
D = MVNSingular(cov=np.diag([1, 1, 0]))
> _check_entropy("MVN[1,1,0]", D, N=10000)
/usr/lib/python3/dist-packages/bumps/dream/entropy.py:1074:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib/python3/dist-packages/bumps/dream/entropy.py:1010: in _check_entropy
H = D.entropy()/LN2
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bumps.dream.entropy.MVNSingular object at 0x7fda5ba23d60>, N = 10000
def entropy(self, N=10000):
with np.errstate(divide='ignore'):
> return 0.5*log(np.linalg.det((2*pi*np.e)*self.dist.cov))
E AttributeError: 'multivariate_normal_frozen' object has no
attribute 'cov'
/usr/lib/python3/dist-packages/bumps/dream/entropy.py:863: AttributeError
--- End Message ---
--- Begin Message ---
Source: python-bumps
Source-Version: 0.9.0-3
Done: Drew Parsons <dpars...@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-bumps, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1029...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <dpars...@debian.org> (supplier of updated python-bumps package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 26 Jan 2023 17:07:11 +0100
Source: python-bumps
Architecture: source
Version: 0.9.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Drew Parsons <dpars...@debian.org>
Closes: 1029693
Changes:
python-bumps (0.9.0-3) unstable; urgency=medium
.
* debian patch scipy_1.10.patch patches covariance handling to allow
for changes in scipy 1.10 (stats.Covariance).
See Upstream Issue #118. Closes: #1029693.
* Standards-Version: 4.6.2
Checksums-Sha1:
b7c9ed69c77e36319eef5ccf2e0ba3c6e9b11660 2649 python-bumps_0.9.0-3.dsc
b5c28871d45c3359e9bc00050cc8fe02982744a0 14264
python-bumps_0.9.0-3.debian.tar.xz
Checksums-Sha256:
094a3ada91a9ef480abc3bcfe876d4ded69015ef3f26fbdd676ae11c18add59e 2649
python-bumps_0.9.0-3.dsc
fef5736ab605bfef9dcdec34838a67c6be32bef61735364b31b200dc9121a0cc 14264
python-bumps_0.9.0-3.debian.tar.xz
Files:
c350078948731f38641819f3ff25b4b9 2649 science optional python-bumps_0.9.0-3.dsc
8d5fd61b619f311b8c9fa5d5f27e26ac 14264 science optional
python-bumps_0.9.0-3.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=Cz9m
-----END PGP SIGNATURE-----
--- End Message ---
--
debian-science-maintainers mailing list
debian-science-maintainers@alioth-lists.debian.net
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
