Bug#1055228: Bug#1055750: Bug#1055228: plplot: FTBFS on armhf (test segfault)

2024-01-01 Thread Sebastiaan Couwenberg
plplot got removed from armhf, the severity of this issue could be lowered to important to not have the package removed from testing. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- debian-science-maintainers mailing

Bug#1056891: statsmodels: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:58 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056889: skimage: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:56 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056887: sfepy: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:55 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056880: qutip: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:48 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056878: qiskit-terra: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:47 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056881: qiskit-aer: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:46 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056875: python-thinc: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:42 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056845: pynfft: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:06:09 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056836: pyfftw: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:59 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056832: pplpy: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:56 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch switches

Bug#1056830: petsc4py: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:54 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056826: openems: ftbfs with cython 3.0.x

2023-12-10 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:49 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056822: mpi4py-fft: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:44 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056820: mpi4py: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:43 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056819: mlpy: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:41 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056811: libgpuarray: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:34 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056807: h5py: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:28 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056806: guiqwt: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 pending On Sun, 26 Nov 2023 10:05:27 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056802: gensim: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:24 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056797: cypari2: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:19 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1056787: astra-toolbox: ftbfs with cython 3.0.x

2023-12-09 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sun, 26 Nov 2023 10:05:08 + Matthias Klose wrote: If the package cannot be built with cython 3.0.5, please change the build dependency from cython3 to cython3-legacy (available now in unstable). There is no replacement for cython3-dbg. The attached patch

Bug#1052037: fasttext: Can't be imported on armel

2023-09-23 Thread Sebastiaan Couwenberg
Something like this may suffice as a workaround: diff --git a/debian/rules b/debian/rules index 9ebd14e..ab49761 100755 --- a/debian/rules +++ b/debian/rules @@ -6,6 +6,11 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all DPKG_EXPORT_BUILDFLAGS = 1 include /usr/share/dpkg/buildflags.mk

Bug#1041457: python-escript: FTBFS on i386

2023-08-03 Thread Sebastiaan Couwenberg
Control: severity -1 important python-escript was removed from i386 (#1042939). Reducing the severity accordingly. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- debian-science-maintainers mailing list

Bug#1039871: python-xarray: FTBFS (PermissionError: [Errno 13] Permission denied: '/sbuild-nonexistent')

2023-06-29 Thread Sebastiaan Couwenberg
Control: tags -1 patch The attached patch resolves the FTBFS by nbsphinx_allow_errors = False from doc/conf.py Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1diff -Nru python-xarray-2023.06.0/debian/changelog

Bug#1038614: vtk9: Stop using netcdf-cxx-legacy

2023-06-18 Thread Sebastiaan Couwenberg
Control: tags -1 pending This is fixed in the experimental branch: https://salsa.debian.org/science-team/vtk9/-/commit/b4d5c6bf1de79c3ef0e75cd94d176f0c2fbc99f4 Anton, please pull the changes to ensure they're included when you move the package from experimental to unstable. Kind Regards,

Bug#996976: vtk6: Remove vtk6 from the Debian 12

2023-06-18 Thread Sebastiaan Couwenberg
itksnap is the only remain rdep of vtk6: sebastic@coccia:~$ dak rm -Rn vtk6 Will remove the following packages from unstable: libvtk6-dev | 6.3.0+dfsg2-8.1+b1 | amd64, arm64, armel, armhf, i386, mips64el, mipsel, ppc64el, s390x libvtk6-qt-dev | 6.3.0+dfsg2-8.1+b1 | amd64, arm64, armel,

Bug#1029249: scikit-learn: FTBFS: build-dependency not installable: python-numpy-doc

2023-01-21 Thread Sebastiaan Couwenberg
Control: tags -1 patch A fix has been committed in git: https://salsa.debian.org/science-team/scikit-learn/-/commit/2f2538d7538f693f3600713fc816c07f8a0990da Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#1029109: cimg: build dependency gone after tiff transition

2023-01-20 Thread Sebastiaan Couwenberg
Control: tags -1 patch A patch has been committed in git: https://salsa.debian.org/science-team/cimg/-/commit/1dc81d57ed0d293cf2b7c208da25ece765f64004 Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#1028695: python-hdf5storage: FTBFS: build-dependency not installable: python-numpy-doc

2023-01-19 Thread Sebastiaan Couwenberg
Control: tags -1 pending A fix has been committed in git: https://salsa.debian.org/science-team/python-hdf5storage/-/commit/78d2bc277af59a8d2881b2290d175822b39ca65b Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#1028825: python-igor: FTBFS: AttributeError: module 'numpy' has no attribute 'complex'

2023-01-19 Thread Sebastiaan Couwenberg
Control: affects -1 src:arpys Control: tags -1 patch A patch has been committed in git: https://salsa.debian.org/science-team/igor/-/commit/4f292cca1d326fea9162c4d857ad76b9328b23ab Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A

Bug#1027205: tpot: autopkgtest fail with numpy/1.24.1

2023-01-16 Thread Sebastiaan Couwenberg
Control: tags -1 patch A patch has been committed in git: https://salsa.debian.org/science-team/tpot/-/commit/b7989129ccecae0b9cff9a3fa5b863a0d551815e Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#1027210: vedo: autopkgtest fail with numpy/1.24.1

2023-01-16 Thread Sebastiaan Couwenberg
Control: tags -1 patch A patch has been committed in git: https://salsa.debian.org/science-team/vedo/-/commit/38552518c68ac46d03de940c6b4ed88aa987962a Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#1027217: python-pymbar: autopkgtest fail with numpy/1.24.1

2023-01-16 Thread Sebastiaan Couwenberg
Control: tags -1 patch A patch has been committed in git: https://salsa.debian.org/science-team/python-pymbar/-/commit/731962ad419521a78c753ef6010ef3bed9980663 Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#1028874: mlpy: FTBFS: ImportError: cannot import name 'bool' from 'numpy' (/usr/lib/python3/dist-packages/numpy/__init__.py)

2023-01-14 Thread Sebastiaan Couwenberg
Control: tags -1 patch On Sat, 14 Jan 2023 13:41:32 +0100 Lucas Nussbaum wrote: > ImportError: cannot import name 'bool' from 'numpy' (/usr/lib/python3/dist-packages/numpy/__init__.py) This is fixed in git:

Bug#1023520: sumo: FTBFS (setuptools missing --install-layout=deb)

2022-11-11 Thread Sebastiaan Couwenberg
Control: tags -1 patch On 11/5/22 21:04, Bas Couwenberg wrote: python3-setuptools no longer defaults to --install-layout=deb, sumo will need a patch to add this to the generated setup.py. The attached patch resolves this issue. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1

Bug#1013754: python-h5netcdf: FTBFS with NetCDF 4.9.0 (test failures)

2022-06-27 Thread Sebastiaan Couwenberg
Control: tags -1 fixed-upstream On 6/25/22 14:30, Bas Couwenberg wrote: The attached patch fixes the issue. Upstream has published a new release with a fix for this issue: " h5netcdf patch release 1.0.1 is available on PyPI now. " Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1

Bug#1012663: paraview: FTBFS in unstable (error: expected identifier or ‘(’ before numeric constant)

2022-06-19 Thread Sebastiaan Couwenberg
Control: tags -1 upstream patch Control: forwarded -1 https://gitlab.kitware.com/paraview/paraview/-/issues/21442 The attached patch resolves the issue by renaming the conflicting variable. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1

Bug#1012703: vtk9: FTBFS with NetCDF 4.9.0 (error: expected identifier or '(' before numeric constant)

2022-06-19 Thread Sebastiaan Couwenberg
Control: tags -1 upstream patch Control: forwarded -1 https://gitlab.kitware.com/vtk/vtk/-/issues/18576 The attached patch resolves the issue by renaming the conflicting variable. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A

Bug#1012663: paraview: FTBFS in unstable (error: expected identifier or ‘(’ before numeric constant)

2022-06-11 Thread Sebastiaan Couwenberg
On 6/11/22 15:03, Bas Couwenberg wrote: /<>/VTK/ThirdParty/exodusII/vtkexodusII/src/ex_utils.c:1773:19: error: expected identifier or ‘(’ before numeric constant 1773 | const int NC_SZIP_NN = 32; /* Selects nearest neighbor coding method for szip. */ |

Bug#1007131: facet-analyser: Don't depend on PDAL

2022-04-13 Thread Sebastiaan Couwenberg
On 3/11/22 19:09, Bas Couwenberg wrote: Your package build depends on PDAL, which is going to be removed. The attached patch fixes the issue by dropping the package from the build dependencies. paraview (5.10.1-1) dropped the pdal (build) dependencies, that should unblock the fix in

Bug#983299: vtk9: FTBFS with PROJ 8.0.0

2021-03-12 Thread Sebastiaan Couwenberg
Control: tags -1 fixed-upstream Patch is available upstream: https://gitlab.kitware.com/vtk/vtk/-/merge_requests/7731 Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- debian-science-maintainers mailing list

Bug#983299: vtk9: FTBFS with PROJ 8.0.0

2021-02-26 Thread Sebastiaan Couwenberg
Control: tags -1 patch On 2/25/21 1:49 PM, Sebastiaan Couwenberg wrote: > On 2/22/21 7:29 AM, Bas Couwenberg wrote: >> It needs to be ported to use proj.h instead of proj_api.h which has been >> removed. > > While upstream has added support for proj.h this may not be easy t

Bug#983299: vtk9: FTBFS with PROJ 8.0.0

2021-02-25 Thread Sebastiaan Couwenberg
On 2/22/21 7:29 AM, Bas Couwenberg wrote: > It needs to be ported to use proj.h instead of proj_api.h which has been > removed. While upstream has added support for proj.h this may not be easy to get into the vtk9 Debian package. Like with vtk6 (#931943) & vtk7 (#931943) you may want to use the

Bug#966986: Most likely fixed in sphinx (2.4.3-5)

2020-08-10 Thread Sebastiaan Couwenberg
A smiliar issue was reported for mapproxy in #966979, which was not an issue in mapproxy but in sphinx, and fixed in sphinx (2.4.3-5). I have not tested the build of this package, but the dh_sphinxdoc issue is mostl likely fixed with sphinx (2.4.3-5) as well. Kind Regards, Bas -- GPG Key ID:

Bug#960656: sdpb: FTBFS on mipsel

2020-05-17 Thread Sebastiaan Couwenberg
On Fri, 15 May 2020 10:10:19 +0200 Sebastian Ramacher wrote: > sdpb failed to build on mipsel while rebuilding for the tinyxml2 transition: > https://buildd.debian.org/status/fetch.php?pkg=sdpb=mipsel=1.0-3%2Bb5=1589492907=0 sdpb has been removed from mipsel (#960747) to unblock the transition.

Bug#950743: satpy: autopkgtest failures

2020-02-05 Thread Sebastiaan Couwenberg
On 2/5/20 10:02 PM, Antonio Valentino wrote: > indeed the problem is related to xarray, but IMHO the problem is in the > latest version of the xarray package which seems to be broken. > The xarray.core subpackage (wihic is also used in xarray/__init__.py) > seems to be totally missing. > > I'm

Bug#932683: Bug#932679: python-gdal dropped from gdal (3.0.1+dfsg-1~exp3)

2019-10-01 Thread Sebastiaan Couwenberg
On 10/1/19 11:08 PM, Sandro Tosi wrote: > On Tue, Oct 1, 2019 at 1:21 PM Sebastiaan Couwenberg > wrote: >> >> On 8/30/19 10:20 AM, Sebastiaan Couwenberg wrote: >>> gdal (3.0.1+dfsg-1~exp3) dropped support for Python 2 and no longer >>> builds python-gdal.

Bug#932683: python-gdal dropped from gdal (3.0.1+dfsg-1~exp3)

2019-10-01 Thread Sebastiaan Couwenberg
On 8/30/19 10:20 AM, Sebastiaan Couwenberg wrote: > gdal (3.0.1+dfsg-1~exp3) dropped support for Python 2 and no longer > builds python-gdal. The next upload of GDAL 2.4.x will also drop support for Python 2 and no longer build python-gdal. Kind Regards, Bas -- GPG Key ID:

Bug#932683: Bug#932679: python-gdal dropped from gdal (3.0.1+dfsg-1~exp3)

2019-09-16 Thread Sebastiaan Couwenberg
block 932679 by 932197 938330 938307 937262 937258 block 932679 by 937145 936503 936704 936285 thanks On 9/17/19 6:05 AM, Sandro Tosi wrote: > thanks for the heads up, but please note python-networkx has still > planty of reverse-dependencies, so we cannot drop that package yet. > please dont

Bug#932683: python-gdal dropped from gdal (3.0.1+dfsg-1~exp3)

2019-08-30 Thread Sebastiaan Couwenberg
gdal (3.0.1+dfsg-1~exp3) dropped support for Python 2 and no longer builds python-gdal. Your package will break when the transition to gdal 3.x starts. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#931943: vtk6: FTBFS with PROJ 6

2019-08-27 Thread Sebastiaan Couwenberg
vtk6 is failing to build with the new proj in unstable as part of the transition. Please move the fixed packages from experimental to unstable. Kind Regards, Bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 --

Bug#931940: FTBFS with PROJ 6

2019-08-25 Thread Sebastiaan Couwenberg
Control: severity -1 serious The proj transition has started, raising severity accordingly. Kind Regards, bas -- GPG Key ID: 4096R/6750F10AE88D4AF1 Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1 -- debian-science-maintainers mailing list

Bug#874727: OSG changing VRML renderer away from coin3

2018-11-04 Thread Sebastiaan Couwenberg
bsfcgal-dev >>> -> libsfcgal-osg1 -> libopenscenegraph100v5 -> libcoin80v5. Looking at >>> https://udd.debian.org/cgi-bin/autoremovals.cgi there's quite a few >>> packages depending on coin3. So the question whether this affects >>> freecad only or more packages is

Re: netcdf4-python/1.4.0-1 breaks python-pydap/3.2.2+ds1-1 autopkgtest in testing

2018-05-16 Thread Sebastiaan Couwenberg
On 05/16/2018 08:43 PM, Paul Gevers wrote: > With a recent upload of netcdf4-python the autopkgtest of python-pydap > started to fail in testing [2]. This is currently delaying the migration > of netcdf4-python version 1.4.0-1 [3]. numpy is breaking many more packages, causing their testing