Bug#737153: OpenCVModules.cmake not installed, causing visp FTBFS

2014-02-19 Thread Thomas Moulard
On Wed, Feb 19, 2014 at 3:43 PM, Nobuhiro Iwamatsu iwama...@nigauri.org wrote:
 Hi,

 I just upload opencv 2.4.8+dfsg1-2.
 This version fixes a problem that can not be build applications using opencv.
 But visp has other build error by libusb.h in /usr/include/libfreenect.hpp.
 Could you check this problem?

Hi,
thank you for fixing the bug!

I cannot reproduce the problem (builds fine on my local pbuilder).
Is it architecture specific? Could you please attach the log on your machine?

Best,
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Bug#737153: OpenCVModules.cmake not installed, causing visp FTBFS

2014-02-19 Thread Fabien Spindler

Le 19/02/14 09:32, Thomas Moulard a écrit :

On Wed, Feb 19, 2014 at 3:43 PM, Nobuhiro Iwamatsu iwama...@nigauri.org wrote:

Hi,

I just upload opencv 2.4.8+dfsg1-2.
This version fixes a problem that can not be build applications using opencv.
But visp has other build error by libusb.h in /usr/include/libfreenect.hpp.
Could you check this problem?

Hi,
thank you for fixing the bug!

I cannot reproduce the problem (builds fine on my local pbuilder).
Is it architecture specific? Could you please attach the log on your machine?


I'm able to reproduce the bug. It comes when package libusb-1.0-0-dev 
package is installed.

I will fix the issue and send the patch.

Fabien


Best,


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Processing of oce_0.15-2_amd64.changes

2014-02-19 Thread Debian FTP Masters
oce_0.15-2_amd64.changes uploaded successfully to localhost
along with the files:
  oce_0.15-2.dsc
  oce_0.15-2.debian.tar.xz
  liboce-foundation8_0.15-2_amd64.deb
  liboce-modeling8_0.15-2_amd64.deb
  liboce-visualization8_0.15-2_amd64.deb
  liboce-ocaf-lite8_0.15-2_amd64.deb
  liboce-ocaf8_0.15-2_amd64.deb
  oce-draw_0.15-2_amd64.deb
  liboce-foundation-dev_0.15-2_amd64.deb
  liboce-modeling-dev_0.15-2_amd64.deb
  liboce-ocaf-lite-dev_0.15-2_amd64.deb
  liboce-ocaf-dev_0.15-2_amd64.deb
  liboce-visualization-dev_0.15-2_amd64.deb

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Bug#737153: OpenCVModules.cmake not installed, causing visp FTBFS

2014-02-19 Thread Fabien Spindler

Le 19/02/14 09:59, Fabien Spindler a écrit :

Le 19/02/14 09:32, Thomas Moulard a écrit :

On Wed, Feb 19, 2014 at 3:43 PM, Nobuhiro Iwamatsuiwama...@nigauri.org  wrote:

Hi,

I just upload opencv 2.4.8+dfsg1-2.
This version fixes a problem that can not be build applications using opencv.
But visp has other build error by libusb.h in /usr/include/libfreenect.hpp.
Could you check this problem?

Hi,
thank you for fixing the bug!

I cannot reproduce the problem (builds fine on my local pbuilder).
Is it architecture specific? Could you please attach the log on your machine?


I'm able to reproduce the bug. It comes when package libusb-1.0-0-dev 
package is installed.

I will fix the issue and send the patch.

Fabien


Attached is the patch for ViSP 2.8.0.

Fabien


Best,




Index: CMakeModules/FindLIBUSB-1.cmake
===
--- CMakeModules/FindLIBUSB-1.cmake (revision 4677)
+++ CMakeModules/FindLIBUSB-1.cmake (working copy)
@@ -35,6 +35,7 @@
 #
 # LIBUSB_1_FOUND
 # LIBUSB_1_LIBRARIES
+# LIBUSB_1_INCLUDE_DIRS
 #
 # Authors:
 # Celine Teuliere
@@ -55,11 +56,18 @@
 /usr/lib
 /usr/local/lib
 )
+  FIND_PATH(LIBUSB_1_INCLUDE_DIR libusb.h
+$ENV{LIBUSB_1_HOME}/include/libusb-1.0
+$ENV{LIBUSB_1_HOME}/build/include/libusb-1.0
+/usr/include/libusb-1.0
+/usr/local/include/libusb-1.0
+)
 ENDIF(WIN32)
 
 ## 
 
-IF(LIBUSB_1_LIBRARY)
+IF(LIBUSB_1_LIBRARY AND LIBUSB_1_INCLUDE_DIR)
+  SET(LIBUSB_1_INCLUDE_DIRS ${LIBUSB_1_INCLUDE_DIR})
   SET(LIBUSB_1_LIBRARIES ${LIBUSB_1_LIBRARY})
   SET(LIBUSB_1_FOUND TRUE)
 ELSE()
@@ -67,6 +75,8 @@
 ENDIF()
 
 MARK_AS_ADVANCED(
+  LIBUSB_1_INCLUDE_DIRS
+  LIBUSB_1_INCLUDE_DIR
   LIBUSB_1_LIBRARIES
   LIBUSB_1_LIBRARY
   )
Index: CMakeLists.txt
===
--- CMakeLists.txt  (revision 4677)
+++ CMakeLists.txt  (working copy)
@@ -1073,6 +1073,7 @@
  
 MESSAGE(STATUS libusb-1.0 found)
  
+LIST(APPEND VISP_EXTERN_INCLUDE_DIRS ${LIBUSB_1_INCLUDE_DIRS})
 LIST(APPEND VISP_EXTERN_LIBRARIES ${LIBUSB_1_LIBRARIES})
   ELSE()
 MESSAGE(STATUS libusb-1.0 not found)
@@ -1089,7 +1090,7 @@
 # The material is found. Check if libfreenect is an old version
 include(CheckCXXSourceCompiles)
 SET(CMAKE_REQUIRED_LIBRARIES ${LIBFREENECT_LIBRARIES} ${PTHREAD_LIBRARIES} 
${LIBUSB_1_LIBRARIES})
-SET(CMAKE_REQUIRED_INCLUDES ${LIBFREENECT_INCLUDE_DIRS} 
${PTHREAD_INCLUDE_DIRS})
+SET(CMAKE_REQUIRED_INCLUDES ${LIBFREENECT_INCLUDE_DIRS} 
${PTHREAD_INCLUDE_DIRS} ${LIBUSB_1_INCLUDE_DIRS})
 CHECK_CXX_SOURCE_COMPILES(
   #include libfreenect.hpp
 
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Bug#737437: Your opinion on the next step

2014-02-19 Thread Δημήτρης Ευταξιόπουλος
Hello Bastien,
I got the following reply from upstream. I do not know how i should proceed 
before packaging version 2.2.1. Should I:

1) Ask upstream to remove these files from the tarball?
2) Repack the source tarball myself excluding these files?
3) Proceed with with the files in the source tree?

I would opt for (3) since the files may be used in tests of the source code.

Best regards
Dimitris


 Yes.
 
 2014-02-05 Δημήτρης Ευταξιόπουλος eftax...@otenet.gr:
  Hello Alexey,
  Can I tell them that these 3 files are the source files themselves?
  They are plain text ascii files, not binary.
  
  Thanks
  Dimitris
  
  Στις Τρι 04 Φεβ 2014 14:14:23 Alexey Balakin έγραψε:
   Dear Dimitris
   
   You can find them in the SVN repository (folder texinfo/) or in the web.
   But I'm a bit confused, because MathGL don't use them. I just put it for
   tests in SVN tree, but never require to be present or installed.
   
   Alexey
   
   On 04.02.2014 14:11, Δημήτρης Ευταξιόπουλος wrote:
Hello Alexey,

I have received the following bug report for mathgl on Debian. Can you
point out the source of the the 3 javascript files below?

Thanks
Dimitris

Package: src:mathgl
Version: 2.1.3.1-4
Severity: serious
User: debian...@lists.debian.org
Usertags: source-contains-prebuilt-javascript-object
X-Debbugs-CC: ftpmas...@debian.org
control: found -1 2.2-1


I could not find the source of:

mathgl 2.1.3.1-4 (source)

 texinfo/deflate.min.js
 texinfo/gunzip.min.js
 texinfo/inflate.min.js
 
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Bug#739440: FTBFS with libav10

2014-02-19 Thread Sebastian Ramacher
Control: forwarded -1 https://github.com/Itseez/opencv/pull/2293

On 2014-02-18 19:59:48, Moritz Muehlenhoff wrote:
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/ffmpeg_codecs.hpp:256:7:
  error: 'CODEC_ID_TARGA' was not declared in this
 scope
  { CODEC_ID_TARGA, MKTAG('t', 'g', 'a', ' ') },
^
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/ffmpeg_codecs.hpp:258:7:
  error: 'CODEC_ID_NONE' was not declared in this scope
  { CODEC_ID_NONE, 0 },
^
 In file included from 
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg.cpp:45:0:
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg_impl.hpp: In 
 member function 'double CvCapture_FFMPEG::getProperty(int)':
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg_impl.hpp:773:33:
  error: 'AVStream' has no member named 'r_frame_rate'
  return av_q2d(video_st-r_frame_rate);
  ^
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg_impl.hpp: In 
 member function 'double CvCapture_FFMPEG::get_fps()':
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg_impl.hpp:820:49:
  error: 'AVStream' has no member named 'r_frame_rate'
  double fps = r2d(ic-streams[video_stream]-r_frame_rate);
  ^
 In file included from 
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg.cpp:45:0:
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg_impl.hpp: In 
 function 'int icv_av_write_frame_FFMPEG(AVFormatContext*, AVStream*, 
 uint8_t*, uint32_t, AVFrame*)':
 /home/jmm/av10/opencv-2.4.8+dfsg1/modules/highgui/src/cap_ffmpeg_impl.hpp:1236:72:
  error: 'avcodec_encode_video' was not declared in this scope
  out_size = avcodec_encode_video(c, outbuf, outbuf_size, picture);
 ^
 make[3]: *** 
 [modules/highgui/CMakeFiles/opencv_highgui.dir/src/cap_ffmpeg.cpp.o] Error 1
 make[3]: Leaving directory 
 `/home/jmm/av10/opencv-2.4.8+dfsg1/obj-x86_64-linux-gnu'
 make[2]: *** [modules/highgui/CMakeFiles/opencv_highgui.dir/all] Error 2
 make[2]: Leaving directory 
 `/home/jmm/av10/opencv-2.4.8+dfsg1/obj-x86_64-linux-gnu'
 make[1]: *** [all] Error 2
 make[1]: Leaving directory 
 `/home/jmm/av10/opencv-2.4.8+dfsg1/obj-x86_64-linux-gnu'
 dh_auto_build: make -j1 returned exit code 2
 make: *** [build] Error 2
 dpkg-buildpackage: error: debian/rules build gave error exit status 2

A patch for the inclusion in opencv is currently discussed at GitHub.
Marked as forwarded to the pull request with the patch.

Regards
-- 
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Processed: Re: Bug#739440: FTBFS with libav10

2014-02-19 Thread Debian Bug Tracking System
Processing control commands:

 forwarded -1 https://github.com/Itseez/opencv/pull/2293
Bug #739440 [src:opencv] FTBFS with libav10
Set Bug forwarded-to-address to 'https://github.com/Itseez/opencv/pull/2293'.

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Processing of yorick-av_0.0.3-1_amd64.changes

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yorick-av_0.0.3-1_amd64.changes uploaded successfully to localhost
along with the files:
  yorick-av_0.0.3-1.dsc
  yorick-av_0.0.3.orig.tar.gz
  yorick-av_0.0.3-1.debian.tar.xz
  yorick-av_0.0.3-1_amd64.deb

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yorick-av_0.0.3-1_amd64.changes ACCEPTED into unstable

2014-02-19 Thread Debian FTP Masters


Accepted:

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Format: 1.8
Date: Wed, 19 Feb 2014 12:29:26 +0100
Source: yorick-av
Binary: yorick-av
Architecture: source amd64
Version: 0.0.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Thibaut Paumard thib...@debian.org
Description: 
 yorick-av  - write movies from Yorick in various formats
Closes: 739377
Changes: 
 yorick-av (0.0.3-1) unstable; urgency=low
 .
   * New upstream release. Fixes bug: FTBFS with libav10, thanks to
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yorick-av_0.0.3-2_amd64.changes ACCEPTED into unstable

2014-02-19 Thread Debian FTP Masters


Accepted:

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Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Thibaut Paumard thib...@debian.org
Description: 
 yorick-av  - write movies from Yorick in various formats
Changes: 
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 .
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Bug#725673: marked as done (libopenblas-base: No direct linking of openblas possible, always redirects to libblas.so.3.)

2014-02-19 Thread Debian Bug Tracking System
Your message dated Wed, 19 Feb 2014 16:50:46 +
with message-id e1wgama-fz...@franck.debian.org
and subject line Bug#725673: fixed in openblas 0.2.8-4
has caused the Debian Bug report #725673,
regarding libopenblas-base: No direct linking of openblas possible, always 
redirects to libblas.so.3.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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---BeginMessage---
Package: libopenblas-base
Version: 0.2.8-2
Severity: important
Tags: upstream

Dear Maintainer,

I am using openblas on debian wheezy and linked my programs explicitly (for
benchmarking purpose and not to run update-alternatives as root everytime)
using
 $ export LD_LIBRARY_PATH=/usr/lib/openblas-base/
 $ gcc -o test.openblas -L/usr/lib/openblas-base test.c -lopenblas
and got an binary which depends on libopenblas.so.

Now we update to Debian Testing/Jessie and the following happened:
 $ export LD_LIBRARY_PATH=/usr/lib/openblas-base/
 $ gcc -o test.openblas -L/usr/lib/openblas-base test.c -lopenblas
 $ ldd test.openblas
linux-gate.so.1 (0xb76e5000)
libblas.so.3 = /usr/lib/libblas.so.3 (0xb65d5000)
libc.so.6 = /lib/i386-linux-gnu/i686/cmov/libc.so.6 (0xb6426000)
libm.so.6 = /lib/i386-linux-gnu/i686/cmov/libm.so.6 (0xb63e2000)
libpthread.so.0 = /lib/i386-linux-gnu/i686/cmov/libpthread.so.0
(0xb63c7000)
/lib/ld-linux.so.2 (0xb76e6000)

which does not any longer include Openblas directly and forces to use the
update-alternative system. I figured out that this behavior was introduced to
solve bug #687349 ( see the libblas3-soname.patch). I think this behavior is
not helpful for every day live.  In contrast if a want to do the same using
ATLAS I can link againf libf77blas and  libatlas and it works without this
issue.

I think there must be another solution to solve bug #687349 without this bad
soname trick. In case of ATLAS there is a separate library which contains all
dependencies to ATLAS but it still allows to use ATLAS explicitly overriding
the update-alternatives system.



*** Please consider answering these questions, where appropriate ***

   * What led up to the situation?
   * What exactly did you do (or not do) that was effective (or
 ineffective)?
   * What was the outcome of this action?
   * What outcome did you expect instead?

*** End of the template - remove these lines ***



-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 3.10-3-686-pae (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages libopenblas-base depends on:
ii  libc6  2.17-93

libopenblas-base recommends no packages.

Versions of packages libopenblas-base suggests:
ii  liblapack3  3.4.2+dfsg-4

-- no debconf information
#include stdio.h 
#include stdlib.h 

double dnrm2_(int * N, double * X, int * INCX); 

int main ( int argc, char ** argv )
{
	double A[2]={2,2}; 
	int INCX = 1; 
	int N = 2; 
	printf(nrm2 = %lg, dnrm2_(N,A,INCX)); 
	return 0; 
} 

---End Message---
---BeginMessage---
Source: openblas
Source-Version: 0.2.8-4

We believe that the bug you reported is fixed in the latest version of
openblas, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 725...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sébastien Villemot sebast...@debian.org (supplier of updated openblas package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 19 Feb 2014 17:20:03 +0100
Source: openblas
Binary: libopenblas-base libopenblas-dev
Architecture: source amd64
Version: 0.2.8-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Sébastien Villemot sebast...@debian.org
Description: 
 libopenblas-base - Optimized BLAS (linear algebra) library based on GotoBLAS2
 libopenblas-dev - Optimized BLAS (linear algebra) library based on GotoBLAS2
Closes: 725673 739331
Changes: 
 openblas 

Bug#737675: marked as done (openblas: openmp change deadlocks python-scipy)

2014-02-19 Thread Debian Bug Tracking System
Your message dated Wed, 19 Feb 2014 17:53:04 +0100
with message-id 1392828784.12680.40.ca...@rama.villemot.name
and subject line Re: Bug#737675: openblas: openmp change deadlocks python-scipy
has caused the Debian Bug report #737675,
regarding openblas: openmp change deadlocks python-scipy
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
737675: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=737675
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: openblas
Version: 0.2.8-3
Severity: important

the recent switch of openblas to openmp causes deadlocks in the scipy
testsuite:
e.g. in sid:
apt-get install python-scipy python-nose
python -c import scipy.spatial; scipy.spatial.test('full', verbose=5)

it will deadlock eating all cpu in gomp at the end.
This is the typical failure pattern caused by forks combined with gnu
openmp (see https://github.com/xianyi/OpenBLAS/issues/294)

But the weird part is this testsuite does not fork at all, so it might
be a different issue.
It did not occur when openblas was still using pthreads.

Given the problems openmp based openblas causes in the python world (see
the linked issue) I would prefer if the change was reverted or openmp
variant split into a separate alternative.
---End Message---
---BeginMessage---
Version: 0.2.8-4

Le mardi 04 février 2014 à 22:42 +0100, Julian Taylor a écrit :
 Package: openblas
 Version: 0.2.8-3
 Severity: important
 
 the recent switch of openblas to openmp causes deadlocks in the scipy
 testsuite:
 e.g. in sid:
 apt-get install python-scipy python-nose
 python -c import scipy.spatial; scipy.spatial.test('full', verbose=5)
 
 it will deadlock eating all cpu in gomp at the end.
 This is the typical failure pattern caused by forks combined with gnu
 openmp (see https://github.com/xianyi/OpenBLAS/issues/294)
 
 But the weird part is this testsuite does not fork at all, so it might
 be a different issue.
 It did not occur when openblas was still using pthreads.
 
 Given the problems openmp based openblas causes in the python world (see
 the linked issue) I would prefer if the change was reverted or openmp
 variant split into a separate alternative.

Reverted to pthreads.

-- 
 .''`.Sébastien Villemot
: :' :Debian Developer
`. `' http://www.dynare.org/sebastien
  `-  GPG Key: 4096R/381A7594



signature.asc
Description: This is a digitally signed message part
---End Message---
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Processed: found 684344 in openblas/0.2.8-4

2014-02-19 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 found 684344 openblas/0.2.8-4
Bug #684344 [libopenblas-base] libopenblas-base: please install OpenMP version
Marked as found in versions openblas/0.2.8-4.
 thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
684344: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=684344
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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Processing of glpk_4.53-1_amd64.changes

2014-02-19 Thread Debian FTP Masters
glpk_4.53-1_amd64.changes uploaded successfully to localhost
along with the files:
  glpk_4.53-1.dsc
  glpk_4.53.orig.tar.gz
  glpk_4.53-1.debian.tar.xz
  glpk-doc_4.53-1_all.deb
  libglpk36_4.53-1_amd64.deb
  libglpk36-dbg_4.53-1_amd64.deb
  libglpk-dev_4.53-1_amd64.deb
  glpk-utils_4.53-1_amd64.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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glpk_4.53-1_amd64.changes ACCEPTED into unstable

2014-02-19 Thread Debian FTP Masters


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 19 Feb 2014 18:18:23 +0100
Source: glpk
Binary: libglpk36 libglpk36-dbg libglpk-dev glpk-doc glpk-utils
Architecture: source all amd64
Version: 4.53-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Sébastien Villemot sebast...@debian.org
Description: 
 glpk-doc   - linear programming kit - documentation files
 glpk-utils - linear programming kit - utility files
 libglpk-dev - linear programming kit - development files
 libglpk36  - linear programming kit with integer (MIP) support
 libglpk36-dbg - linear programming kit - debugging symbols
Closes: 718392
Changes: 
 glpk (4.53-1) unstable; urgency=medium
 .
   * Imported Upstream version 4.53
 - fixes reading of gzipped files in glp_prob_read_lp (Closes: #718392)
   * Add upstream PGP key for verification by uscan.
   * debian/copyright: reflect upstream changes.
   * glpk-doc: ship examples showing how to convert old to new API.
Checksums-Sha1: 
 dc4704e89f867339ef3e04315a65e9fec0dfebec 2255 glpk_4.53-1.dsc
 7f61e646d4d669805ac252d62005dfd2ff818d23 2803321 glpk_4.53.orig.tar.gz
 5c1c35d37f33e7ec3d43fceb1a96358325898635 13540 glpk_4.53-1.debian.tar.xz
 c945f71d603aef2df9a6b31f79e45692f3a6a6ee 1027774 glpk-doc_4.53-1_all.deb
 5a9e6b9ae10d56517bec6c6d93b4ab1ffcef9a5c 410362 libglpk36_4.53-1_amd64.deb
 b7dfd2c7b5d4c0b69c77ea4633b46e57a290bb2f 828908 libglpk36-dbg_4.53-1_amd64.deb
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glpk_4.53-1.dsc
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glpk_4.53.orig.tar.gz
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glpk_4.53-1.debian.tar.xz
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libglpk36_4.53-1_amd64.deb
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glpk-utils_4.53-1_amd64.deb
Files: 
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 dbec25d85b30e16928304b7d6bf8be22 2803321 math optional glpk_4.53.orig.tar.gz
 35887e1aa48a4a607e678e75268822fa 13540 math optional glpk_4.53-1.debian.tar.xz
 da657a8c1b39fe57804b524c60f88912 1027774 doc optional glpk-doc_4.53-1_all.deb
 f2a859519722c765dd1499bf2d181ca9 410362 math optional 
libglpk36_4.53-1_amd64.deb
 86505cbbeb0fddd353d16c9cd9017a30 828908 debug extra 
libglpk36-dbg_4.53-1_amd64.deb
 39044ce84549eccdfcedd2b50e584a63 456200 libdevel optional 
libglpk-dev_4.53-1_amd64.deb
 632f1fd106a2cab9d8ebc6dae2b4e466 153748 math optional 
glpk-utils_4.53-1_amd64.deb

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Thank you for your contribution to Debian.

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Bug#718392: marked as done (libglpk0: glp_prob_read_lp fails reading compressed (.gz) files)

2014-02-19 Thread Debian Bug Tracking System
Your message dated Wed, 19 Feb 2014 17:33:58 +
with message-id e1wgb1y-0005tn...@franck.debian.org
and subject line Bug#718392: fixed in glpk 4.53-1
has caused the Debian Bug report #718392,
regarding libglpk0: glp_prob_read_lp fails reading compressed (.gz) files
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
718392: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=718392
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: libglpk0
Version: 4.45-1
Severity: normal
Tags: upstream

please compile and run glpk_bug_read_gz.c
$ gcc glpk_bug_read_gz.c -lglpk -o glpk_bug_read_gz

The program is based on glpk-4.52.1/examples/sample.c and contains various 
write/read commands.
The write/read pair fails (it is the only one).

  fprintf(stdout, glpk version %s\n, glp_version());
  glp_write_lp(lp, NULL, temp_lp.gz);
  glp_read_lp(lp, NULL, temp_lp.gz);

The terminal output for this program reads:
$ ./glpk_bug_read_gz 
glpk version 4.52
Writing problem data to 'temp_lp.gz'...
11 lines were written
Reading problem data from 'temp_lp.gz'...
temp_lp.gz:12: read error - 

The bug is reproduced with glpk-4.45 as well.

-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 3.9-1-686-pae (SMP w/1 CPU core)
Locale: LANG=en_NZ.UTF-8, LC_CTYPE=en_NZ.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages libglpk0 depends on:
ii  libc6 2.17-7
ii  libgmp10  2:5.1.2+dfsg-2
ii  libltdl7  2.4.2-1.3
ii  zlib1g1:1.2.8.dfsg-1

libglpk0 recommends no packages.

Versions of packages libglpk0 suggests:
ii  libiodbc2-dev   3.52.7-3
ii  libmysqlclient-dev  5.5.31+dfsg-1

-- no debconf information
/* sample.c */

#include stdio.h
#include stdlib.h
#include glpk.h

int main(void)
{ glp_prob *lp;
  int ia[1+1000], ja[1+1000];
  double ar[1+1000], z, x1, x2, x3;
s1:   lp = glp_create_prob();
s2:   glp_set_prob_name(lp, sample);
s3:   glp_set_obj_dir(lp, GLP_MAX);
s4:   glp_add_rows(lp, 3);
s5:   glp_set_row_name(lp, 1, p);
s6:   glp_set_row_bnds(lp, 1, GLP_UP, 0.0, 100.0);
s7:   glp_set_row_name(lp, 2, q);
s8:   glp_set_row_bnds(lp, 2, GLP_UP, 0.0, 600.0);
s9:   glp_set_row_name(lp, 3, r);
s10:  glp_set_row_bnds(lp, 3, GLP_UP, 0.0, 300.0);
s11:  glp_add_cols(lp, 3);
s12:  glp_set_col_name(lp, 1, x1);
s13:  glp_set_col_bnds(lp, 1, GLP_LO, 0.0, 0.0);
s14:  glp_set_obj_coef(lp, 1, 10.0);
s15:  glp_set_col_name(lp, 2, x2);
s16:  glp_set_col_bnds(lp, 2, GLP_LO, 0.0, 0.0);
s17:  glp_set_obj_coef(lp, 2, 6.0);
s18:  glp_set_col_name(lp, 3, x3);
s19:  glp_set_col_bnds(lp, 3, GLP_LO, 0.0, 0.0);
s20:  glp_set_obj_coef(lp, 3, 4.0);
s21:  ia[1] = 1, ja[1] = 1, ar[1] =  1.0; /* a[1,1] =  1 */
s22:  ia[2] = 1, ja[2] = 2, ar[2] =  1.0; /* a[1,2] =  1 */
s23:  ia[3] = 1, ja[3] = 3, ar[3] =  1.0; /* a[1,3] =  1 */
s24:  ia[4] = 2, ja[4] = 1, ar[4] = 10.0; /* a[2,1] = 10 */
s25:  ia[5] = 3, ja[5] = 1, ar[5] =  2.0; /* a[3,1] =  2 */
s26:  ia[6] = 2, ja[6] = 2, ar[6] =  4.0; /* a[2,2] =  4 */
s27:  ia[7] = 3, ja[7] = 2, ar[7] =  2.0; /* a[3,2] =  2 */
s28:  ia[8] = 2, ja[8] = 3, ar[8] =  5.0; /* a[2,3] =  5 */
s29:  ia[9] = 3, ja[9] = 3, ar[9] =  6.0; /* a[3,3] =  6 */
s30:  glp_load_matrix(lp, 9, ia, ja, ar);
  fprintf(stdout, glpk version %s\n, glp_version());
/*
  glp_write_prob(lp, 0, temp_prob); 
  glp_read_prob(lp, 0, temp_prob);
  glp_write_prob(lp, 0, temp_prob.gz); 
  glp_read_prob(lp, 0, temp_prob.gz);
  glp_write_lp(lp, NULL, temp_lp); 
  glp_read_lp(lp, NULL, temp_lp);
*/
  glp_write_lp(lp, NULL, temp_lp.gz);
  glp_read_lp(lp, NULL, temp_lp.gz);
/*
  glp_write_mps(lp, GLP_MPS_FILE, NULL, temp_mps); 
  glp_read_mps(lp, GLP_MPS_FILE, NULL, temp_mps);
  glp_write_mps(lp, GLP_MPS_FILE, NULL, temp_mps.gz); 
  glp_read_mps(lp, GLP_MPS_FILE, NULL, temp_mps.gz);
*/
s37:  glp_delete_prob(lp);
  return 0;
}

/* eof */
---End Message---
---BeginMessage---
Source: glpk
Source-Version: 4.53-1

We believe that the bug you reported is fixed in the latest version of
glpk, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 718...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sébastien Villemot sebast...@debian.org (supplier of updated glpk package)

(This message 

glpk-java_1.0.32-1_amd64.changes ACCEPTED into unstable

2014-02-19 Thread Debian FTP Masters


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 19 Feb 2014 18:52:04 +0100
Source: glpk-java
Binary: libglpk-java
Architecture: source amd64
Version: 1.0.32-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Sébastien Villemot sebast...@debian.org
Description: 
 libglpk-java - Java binding to the GNU Linear Programming Kit
Changes: 
 glpk-java (1.0.32-1) unstable; urgency=medium
 .
   * Imported Upstream version 1.0.32
Checksums-Sha1: 
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libglpk-java_1.0.32-1_amd64.deb
Files: 
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 744e633fb9bcc32f19debe8dfdf1f363 1153069 java optional 
glpk-java_1.0.32.orig.tar.gz
 442c1f652954867811b81d94a4184b99 3128 java optional 
glpk-java_1.0.32-1.debian.tar.xz
 39f122bd8d98dcbb0c8ca095a5060721 781510 java optional 
libglpk-java_1.0.32-1_amd64.deb

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Thank you for your contribution to Debian.

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openblas_0.1.1-6+deb7u3_amd64.changes ACCEPTED into proposed-updates-stable-new

2014-02-19 Thread Debian FTP Masters
Mapping wheezy to stable.
Mapping stable to proposed-updates.

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 19 Feb 2014 18:41:55 +0100
Source: openblas
Binary: libopenblas-base libopenblas-dev
Architecture: source amd64
Version: 0.1.1-6+deb7u3
Distribution: wheezy
Urgency: low
Maintainer: Debian Science Team 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Sébastien Villemot sebast...@debian.org
Description: 
 libopenblas-base - Optimized BLAS (linear algebra) library based on GotoBLAS2
 libopenblas-dev - Optimized BLAS (linear algebra) library based on GotoBLAS2
Closes: 739331
Changes: 
 openblas (0.1.1-6+deb7u3) wheezy; urgency=low
 .
   * fork-handler.patch: fixes hangs of OpenBLAS when called from a program
 using OpenMP (Closes: #739331)
Checksums-Sha1: 
 0412b599a77bb1d84add5423c7a0a6cc6a492c42 2204 openblas_0.1.1-6+deb7u3.dsc
 d2d013309a9bc20b2cf6883e1acd770c1140d7a8 14120 
openblas_0.1.1-6+deb7u3.debian.tar.gz
 099f67c89a38cd562b544c08b10618250d3c839e 3445962 
libopenblas-base_0.1.1-6+deb7u3_amd64.deb
 31fcf4cd30d3b9e77ea9d8f93c4404cb949a0c02 3978020 
libopenblas-dev_0.1.1-6+deb7u3_amd64.deb
Checksums-Sha256: 
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openblas_0.1.1-6+deb7u3.dsc
 3394d7e18e679b8a39a7e0a3c7911d6249fd85f0c6361846cdbfb13406f9e58f 14120 
openblas_0.1.1-6+deb7u3.debian.tar.gz
 2af7086d3e2cde08f8d1807b73009b2f7a3e83de78ccd2271509960e239b8832 3445962 
libopenblas-base_0.1.1-6+deb7u3_amd64.deb
 99aaa155252788230f8f559fb6de1ba7794efee15fab9980af1eee3792f2 3978020 
libopenblas-dev_0.1.1-6+deb7u3_amd64.deb
Files: 
 bbc40cf970141aad393156c40d01c73c 2204 devel optional 
openblas_0.1.1-6+deb7u3.dsc
 c02a99926c89d4be03fc0e02e78a5355 14120 devel optional 
openblas_0.1.1-6+deb7u3.debian.tar.gz
 5fe8246c15451602dab5525204bb2555 3445962 libs optional 
libopenblas-base_0.1.1-6+deb7u3_amd64.deb
 525af0287f9f5283dad75ec6e6154f1a 3978020 libdevel optional 
libopenblas-dev_0.1.1-6+deb7u3_amd64.deb

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Thank you for your contribution to Debian.

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yorick-yao_5.3.1-1_amd64.changes ACCEPTED into unstable

2014-02-19 Thread Debian FTP Masters


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 19 Feb 2014 21:50:10 +0100
Source: yorick-yao
Binary: yorick-yao
Architecture: source amd64
Version: 5.3.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Thibaut Paumard thib...@debian.org
Description: 
 yorick-yao - Yorick-based adaptive optics system simulator
Changes: 
 yorick-yao (5.3.1-1) unstable; urgency=low
 .
   * New upstream release
   * Upgrade Standards-Version to 3.9.5 (no changes)
   * Update control file
   * Patch yao.py to refer explicitly to /usr/bin/python
Checksums-Sha1: 
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 149661e4f4652e2f9cc1c7b8ac4777fbd7dc6afd 1540690 yorick-yao_5.3.1.orig.tar.gz
 fe7b9e2f7e37f97e6b57f74fab481d2f186fa04b 4648 yorick-yao_5.3.1-1.debian.tar.xz
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Checksums-Sha256: 
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yorick-yao_5.3.1-1.dsc
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yorick-yao_5.3.1.orig.tar.gz
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yorick-yao_5.3.1-1.debian.tar.xz
 185e93e5dfdcaaf03edc0e33836206a4d33a3048600bcf7418ac91705347479a 1229394 
yorick-yao_5.3.1-1_amd64.deb
Files: 
 791c41db2975166109778eff68b8d25a 1993 science extra yorick-yao_5.3.1-1.dsc
 e927237676b2dbf5238f3b2f3cdeaf20 1540690 science extra 
yorick-yao_5.3.1.orig.tar.gz
 c62cfcf92b23edd191cfe6949d646a2f 4648 science extra 
yorick-yao_5.3.1-1.debian.tar.xz
 7308305e17b0216a00422ad7ef2b252a 1229394 science extra 
yorick-yao_5.3.1-1_amd64.deb

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Bug#739558: liboce-foundation-dev: arch-dependent file in Multi-Arch: same package

2014-02-19 Thread Jakub Wilk

Package: liboce-foundation-dev
Version: 0.15-2
Severity: important
User: multiarch-de...@lists.alioth.debian.org
Usertags: multiarch

liboce-foundation-dev is marked as Multi-Arch: same, but the following 
file is architecture-dependent:


/usr/include/oce/oce-config.h

An example diff between i386 and amd64 is attached.

--
Jakub Wilk
diff -ur liboce-foundation-dev_0.15-2_i386/usr/include/oce/oce-config.h 
liboce-foundation-dev_0.15-2_amd64/usr/include/oce/oce-config.h
--- liboce-foundation-dev_0.15-2_i386/usr/include/oce/oce-config.h  
2014-02-19 10:43:27.0 +0100
+++ liboce-foundation-dev_0.15-2_amd64/usr/include/oce/oce-config.h 
2014-02-19 07:36:18.0 +0100
@@ -26,4 +26,4 @@
 
 /* #undef MACOSX_USE_GLX */
 
-#define OCE_IS_DUPLICATE_UINT32_T
+/* #undef OCE_IS_DUPLICATE_UINT32_T */
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Re: viennacl package

2014-02-19 Thread Toby St Clere Smithe
Hi Anton,

Anton Gladky gl...@debian.org writes:
 2013/12/26 Toby St Clere Smithe m...@tsmithe.net:
 Yes, I have. But I am waiting until I have made a 1.0.0 release until I
 finish the job. At the moment, it builds against an in-tree copy of the
 ViennaCL sources, and I hope this will be acceptable until either I or
 someone else has a chance to update the viennacl package to 1.5.0.

 Feel free to update viennacl package to 1.5.0 in VCS [1], prepare
 team upload and ping me.

 [1] http://git.debian.org/?p=debian-science/packages/viennacl.git

I have updated the package in VCS, and also uploaded to
mentors[2]. Could you also sponsor PyViennaCL[3]?

[2] http://mentors.debian.net/debian/pool/main/v/viennacl/viennacl_1.5.1-1.dsc
[3] 
http://mentors.debian.net/debian/pool/main/p/pyviennacl/pyviennacl_1.0.0-1.dsc

Many thanks,

Toby


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Processing of visp_2.8.0-5_amd64.changes

2014-02-19 Thread Debian FTP Masters
visp_2.8.0-5_amd64.changes uploaded successfully to localhost
along with the files:
  visp_2.8.0-5.dsc
  visp_2.8.0-5.debian.tar.xz
  libvisp-dev_2.8.0-5_amd64.deb
  libvisp2.8_2.8.0-5_amd64.deb
  libvisp2.8-dbg_2.8.0-5_amd64.deb
  libvisp-doc_2.8.0-5_all.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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Bug#738391: marked as done (visp: FTBFS: configure errors)

2014-02-19 Thread Debian Bug Tracking System
Your message dated Thu, 20 Feb 2014 06:52:53 +
with message-id e1wgnv7-0008c0...@franck.debian.org
and subject line Bug#738391: fixed in visp 2.8.0-5
has caused the Debian Bug report #738391,
regarding visp: FTBFS: configure errors
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
738391: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=738391
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Source: visp
Version: 2.8.0-4
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20140208 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
 make[1]: Entering directory `/«PKGBUILDDIR»'
 dh_auto_configure -- -DCMAKE_INSTALL_LIBDIR:STRING=lib/x86_64-linux-gnu 
 -DBUILD_DEMOS=ON -DBUILD_TESTING=ON -DBUILD_EXAMPLES=ON 
 -DBUILD_SHARED_LIBS=ON -DUSE_DC1394_1=OFF -DUSE_FFMPEG=ON -DUSE_OPENCV=ON 
 -DUSE_COIN=ON -DUSE_GSL=OFF -DUSE_LAPACK=ON -DUSE_OGRE=ON -DUSE_XML2=ON 
 -DUSE_GTK2=ON -DUSE_LIBJPEG=ON -DUSE_LIBPNG=ON -DUSE_X11=ON -DUSE_DC1394_2=ON 
 -DUSE_V4L2:BOOL=ON -DUSE_OIS=ON -DUSE_LIBFREENECT=ON
 -- The C compiler identification is GNU 4.8.2
 -- The CXX compiler identification is GNU 4.8.2
 -- Check for working C compiler: /usr/bin/cc
 -- Check for working C compiler: /usr/bin/cc -- works
 -- Detecting C compiler ABI info
 -- Detecting C compiler ABI info - done
 -- Check for working CXX compiler: /usr/bin/c++
 -- Check for working CXX compiler: /usr/bin/c++ -- works
 -- Detecting CXX compiler ABI info
 -- Detecting CXX compiler ABI info - done
 -- Performing Test WARNING_ALL_ALLOWED
 -- Performing Test WARNING_ALL_ALLOWED - Success
 -- Performing Test WARNING_EXTRA_ALLOWED
 -- Performing Test WARNING_EXTRA_ALLOWED - Success
 -- Performing Test WARNING_STRICT_OVERFLOW_ALLOWED
 -- Performing Test WARNING_STRICT_OVERFLOW_ALLOWED - Success
 -- Performing Test WARNING_FLOAT_EQUAL_ALLOWED
 -- Performing Test WARNING_FLOAT_EQUAL_ALLOWED - Success
 -- Performing Test WARNING_SIGN_CONVERSION_ALLOWED
 -- Performing Test WARNING_SIGN_CONVERSION_ALLOWED - Success
 -- Performing Test HAS_VISIBILITY
 -- Performing Test HAS_VISIBILITY - Success
 -- Performing Test DC1394_CAMERA_ENUMERATE_FOUND
 -- Performing Test DC1394_CAMERA_ENUMERATE_FOUND - Success
 -- Found PkgConfig: /usr/bin/pkg-config (found version 0.26) 
 -- Boost version: 1.54.0
 -- Found the following Boost libraries:
 --   serialization
 -- Try OpenMP C flag = [-fopenmp]
 -- Performing Test OpenMP_FLAG_DETECTED
 -- Performing Test OpenMP_FLAG_DETECTED - Success
 -- Try OpenMP CXX flag = [-fopenmp]
 -- Performing Test OpenMP_FLAG_DETECTED
 -- Performing Test OpenMP_FLAG_DETECTED - Success
 -- Found OpenMP: -fopenmp  
 -- Try C++11 flag = [-std=c++11]
 -- Performing Test CPP11_FLAG_DETECTED
 -- Performing Test CPP11_FLAG_DETECTED - Success
 -- Found CPP11: -std=c++11  
 -- Looking for XOpenDisplay in 
 /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
 -- Looking for XOpenDisplay in 
 /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - 
 found
 -- Looking for gethostbyname
 -- Looking for gethostbyname - found
 -- Looking for connect
 -- Looking for connect - found
 -- Looking for remove
 -- Looking for remove - found
 -- Looking for shmat
 -- Looking for shmat - found
 -- Looking for IceConnectionNumber in ICE
 -- Looking for IceConnectionNumber in ICE - found
 -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so
 -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so  
 -- Found Coin3D: /usr/lib/x86_64-linux-gnu/libCoin.so  
 -- OGRE_PREFIX_WATCH changed.
 -- checking for module 'OGRE'
 --   found OGRE, version 1.9.0
 -- Looking for OGRE_Paging...
 -- Found OGRE_Paging: 
 optimized;/usr/lib/x86_64-linux-gnu/libOgrePaging.so;debug;/usr/lib/x86_64-linux-gnu/libOgrePaging.so
 -- Looking for OGRE_Terrain...
 -- Found OGRE_Terrain: 
 optimized;/usr/lib/x86_64-linux-gnu/libOgreTerrain.so;debug;/usr/lib/x86_64-linux-gnu/libOgreTerrain.so
 -- Looking for OGRE_Property...
 -- Found OGRE_Property: 
 optimized;/usr/lib/x86_64-linux-gnu/libOgreProperty.so;debug;/usr/lib/x86_64-linux-gnu/libOgreProperty.so
 -- Looking for OGRE_RTShaderSystem...
 -- Found OGRE_RTShaderSystem: 
 optimized;/usr/lib/x86_64-linux-gnu/libOgreRTShaderSystem.so;debug;/usr/lib/x86_64-linux-gnu/libOgreRTShaderSystem.so
 -- Looking for OGRE_Volume...
 -- Found OGRE_Volume: 
 optimized;/usr/lib/x86_64-linux-gnu/libOgreVolume.so;debug;/usr/lib/x86_64-linux-gnu/libOgreVolume.so
 -- Looking for OGRE_Overlay...
 -- Found