Bug#798601: GCC Update

2015-09-11 Thread Roelof Berg 

Probably related to the latest GCC update, I'll take care of it.

--
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Processed: tagging 798675, tagging 798665, tagging 798666

2015-09-11 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> tags 798675 + sid stretch
Bug #798675 [src:openscad] openscad: package has broken dependecies
Added tag(s) stretch and sid.
> tags 798665 + sid stretch
Bug #798665 [src:mmtk] mmtk: FTBFS: Not compatible with python-numpy 1.9
Added tag(s) stretch and sid.
> tags 798666 + sid stretch
Bug #798666 [src:dirspec] dirspec: FTBFS: Fails PEP8 checks
Added tag(s) sid and stretch.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
798665: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798665
798666: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798666
798675: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798675
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#798652: scilab: scilab doesn't work on ppc64el: could not find the Java configuration for the model <>

2015-09-11 Thread Erwan Prioul 
Package: scilab
Version: 5.5.2-1
Severity: normal

While scilab is available on ppc64el, it doesn't actually work:
> $ /usr/bin/scilab
> Could not find the Java configuration for the model . Please contact 
> us on http://bugzilla.scilab.org
> /usr/bin/scilab-bin: error while loading shared libraries: libjava.so: cannot 
> open shared object file: No such file or directory

I apply this patch to get rid of the error:
> --- scilab-5.5.2.orig/bin/scilab
> +++ scilab-5.5.2/bin/scilab
> @@ -528,7 +528,7 @@
>  "ppc"|"powerpc")
>  proc="ppc"
>  ;;
> -"ppc64"|"ppc64el")
> +"ppc64"|"ppc64el"|"ppc64le")
>  proc="ppc64"
>  ;;
>  "s390")

Unfortunately, we then get another error:
> $ /usr/bin/scilab
> Could not create a Scilab main class. Error:
> Exception in thread "main" java.lang.ExceptionInInitializerError
>   at javax.media.opengl.GLProfile.(GLProfile.java:120)
>   at org.scilab.modules.gui.SwingView.(Unknown Source)
>   at org.scilab.modules.gui.SwingView.registerSwingView(Unknown Source)
>   at org.scilab.modules.core.Scilab.(Unknown Source)
> Caused by: java.lang.RuntimeException: Please port CPU detection to your 
> platform (linux/ppc64)
>   at 
> jogamp.common.os.PlatformPropsImpl.getCPUTypeImpl(PlatformPropsImpl.java:304)
>   at 
> jogamp.common.os.PlatformPropsImpl.(PlatformPropsImpl.java:134)
>   ... 4 more
> 
> Scilab cannot create Scilab Java Main-Class (we have not been able to find 
> the main Scilab class. Check if the Scilab and thirdparty packages are 
> available).

Thanks,
Erwan.

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

python-qwt_6.1.2~a3-1~exp1_i386.changes REJECTED

2015-09-11 Thread Scott Kitterman 

Maintainer request.

===

Please feel free to respond to this email if you don't understand why
your files were rejected, or if you upload new files which address our
concerns.


-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#798651: getfem++: FTBFS on ppc64el: Could not find the Java configuration for the model

2015-09-11 Thread Erwan Prioul 
Package: getfem++
Version: 4.2.1~beta1~svn4635~dfsg-5
Severity: normal

Dear Maintainer,

getfem++ doesn't build on ppc64el. Let me know if you need any details.

> powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall 
> -Wstrict-prototypes -fno-strict-aliasing -Wall -g -O2 
> -fstack-protector-strong -Wformat -Werror=format-security -O3 
> -D_FORTIFY_SOURCE=2 -DGMM_USES_BLAS -I/usr/include -I/usr/include -fPIC 
> -I../../../src/getfem -I../../../src/getfem -I./.. -I. 
> -I/usr/lib/python2.7/dist-packages/numpy/core/include 
> -I/usr/include/python2.7 -c getfem_python_c.c -o ./getfem_python_c.o
> In file included from 
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
>  from 
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
>  from 
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>  from getfem_python_c.c:22:
> /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
>  warning: #warning "Using deprecated NumPy API, disable it by " "#defining 
> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it by " \
>   ^
> powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 
> -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall 
> -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat 
> -Werror=format-security -Wl,-z,relro -Wall -g -O2 -fstack-protector-strong 
> -Wformat -Werror=format-security -O3 -D_FORTIFY_SOURCE=2 -DGMM_USES_BLAS 
> -I/usr/include -I/usr/include ./getfem_python_c.o -L../.libs 
> -L../../../src/.libs -lgetfemint -lgetfem -lzmumps_seq -lcmumps_seq 
> -ldmumps_seq -lsmumps_seq -lmuparser -lqhull -lsuperlu -lblas -lsuperlu 
> -lmetis -lstdc++ -lm -o ./_getfem.so
> make[6]: Leaving directory 
> '/build/getfem++-QE2FtB/getfem++-4.2.1~beta1~svn4635~dfsg/interface/src/python'
> Making all in scilab
> make[6]: Entering directory 
> '/build/getfem++-QE2FtB/getfem++-4.2.1~beta1~svn4635~dfsg/interface/src/scilab'
> SCI_DISABLE_TK=1 SCI_JAVA_ENABLE_HEADLESS=1 scilab -nw -nb -f 
> /build/getfem++-QE2FtB/getfem++-4.2.1~beta1~svn4635~dfsg/interface/src/scilab/makefile_builder.sce
> Could not find the Java configuration for the model . Please contact 
> us on http://bugzilla.scilab.org
> /usr/bin/scilab-bin: error while loading shared libraries: libjava.so: cannot 
> open shared object file: No such file or directory
> Makefile:893: recipe for target 'all' failed
> make[6]: *** [all] Error 127

It seems the bug is in scilab. I'll file a bug.

Maybe it would be good to leave this bug open until scilab is fixed,
and then we can check if this package works on ppc64el.

Thanks,
Erwan.

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Processed (with 2 errors): your mail

2015-09-11 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> retitle 798652 scilab: scilab doesn't work on ppc64el: could not find
Bug #798652 [scilab] scilab: scilab doesn't work on ppc64el: could not find the 
Java configuration for the model <>
Changed Bug title to 'scilab: scilab doesn't work on ppc64el: could not find' 
from 'scilab: scilab doesn't work on ppc64el: could not find the Java 
configuration for the model <>'
> the Java configuration for the model 
Unknown command or malformed arguments to command.
> retitle 798651 getfem++: FTBFS on ppc64el: Could not find the Java
Bug #798651 [getfem++] getfem++: FTBFS on ppc64el: Could not find the Java 
configuration for the model 
Changed Bug title to 'getfem++: FTBFS on ppc64el: Could not find the Java' from 
'getfem++: FTBFS on ppc64el: Could not find the Java configuration for the 
model '
> configuration for the model 
Unknown command or malformed arguments to command.
> block 798651 by 798652
Bug #798651 [getfem++] getfem++: FTBFS on ppc64el: Could not find the Java
798651 was not blocked by any bugs.
798651 was not blocking any bugs.
Added blocking bug(s) of 798651: 798652
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
798651: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798651
798652: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798652
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#798652: scilab: scilab doesn't work on ppc64el: could not find the Java configuration for the model <>

2015-09-11 Thread Sylvestre Ledru 
Jogl has to be updated too. I think there is a familiar patch for another arch. 

Le 11 septembre 2015 15:45:19 GMT+02:00, Erwan Prioul 
 a écrit :
>Package: scilab
>Version: 5.5.2-1
>Severity: normal
>
>While scilab is available on ppc64el, it doesn't actually work:
>> $ /usr/bin/scilab
>> Could not find the Java configuration for the model . Please
>contact us on http://bugzilla.scilab.org
>> /usr/bin/scilab-bin: error while loading shared libraries:
>libjava.so: cannot open shared object file: No such file or directory
>
>I apply this patch to get rid of the error:
>> --- scilab-5.5.2.orig/bin/scilab
>> +++ scilab-5.5.2/bin/scilab
>> @@ -528,7 +528,7 @@
>>  "ppc"|"powerpc")
>>  proc="ppc"
>>  ;;
>> -"ppc64"|"ppc64el")
>> +"ppc64"|"ppc64el"|"ppc64le")
>>  proc="ppc64"
>>  ;;
>>  "s390")
>
>Unfortunately, we then get another error:
>> $ /usr/bin/scilab
>> Could not create a Scilab main class. Error:
>> Exception in thread "main" java.lang.ExceptionInInitializerError
>>  at javax.media.opengl.GLProfile.(GLProfile.java:120)
>>  at org.scilab.modules.gui.SwingView.(Unknown Source)
>>  at org.scilab.modules.gui.SwingView.registerSwingView(Unknown
>Source)
>>  at org.scilab.modules.core.Scilab.(Unknown Source)
>> Caused by: java.lang.RuntimeException: Please port CPU detection to
>your platform (linux/ppc64)
>>  at
>jogamp.common.os.PlatformPropsImpl.getCPUTypeImpl(PlatformPropsImpl.java:304)
>>  at
>jogamp.common.os.PlatformPropsImpl.(PlatformPropsImpl.java:134)
>>  ... 4 more
>> 
>> Scilab cannot create Scilab Java Main-Class (we have not been able to
>find the main Scilab class. Check if the Scilab and thirdparty packages
>are available).
>
>Thanks,
>Erwan.
>
>-- 
>debian-science-maintainers mailing list
>debian-science-maintainers@lists.alioth.debian.org
>http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

-- 
Envoyé de mon téléphone Android avec K-9 Mail. Excusez la brièveté.-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Processed: your mail

2015-09-11 Thread Debian Bug Tracking System 
Processing commands for cont...@bugs.debian.org:

> retitle 798652 scilab: scilab doesn't work on ppc64el: could not find the 
> Java configuration for the model 
Bug #798652 [scilab] scilab: scilab doesn't work on ppc64el: could not find
Changed Bug title to 'scilab: scilab doesn't work on ppc64el: could not find 
the Java configuration for the model ' from 'scilab: scilab doesn't 
work on ppc64el: could not find'
> retitle 798651 getfem++: FTBFS on ppc64el: Could not find the Java 
> configuration for the model 
Bug #798651 [getfem++] getfem++: FTBFS on ppc64el: Could not find the Java
Changed Bug title to 'getfem++: FTBFS on ppc64el: Could not find the Java 
configuration for the model ' from 'getfem++: FTBFS on ppc64el: Could 
not find the Java'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
798651: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798651
798652: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798652
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

-- 
debian-science-maintainers mailing list
debian-science-maintainers@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers

Bug#798665: mmtk: FTBFS: Not compatible with python-numpy 1.9

2015-09-11 Thread Chris Lamb 
Source: mmtk
Version: 2.7.9-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org

Dear Maintainer,

mmtk fails to build from source in unstable/amd64 as python-numpy 1.9
removed oldnumeric:

  [..]

 dh_auto_build
python setup.py build --force
  Traceback (most recent call last):
File "setup.py", line 66, in 
  from Scientific import N
File "/usr/lib/python2.7/dist-packages/Scientific/N.py", line 6, in

  from numpy.oldnumeric import *
  ImportError: No module named oldnumeric
  dh_auto_build: python setup.py build --force returned exit code 1
  debian/rules:34: recipe for target 'build' failed
  make: *** [build] Error 1
  dpkg-buildpackage: error: debian/rules build gave error exit status 2

  [..]

The full build log is attached or can be viewed here:


https://reproducible.debian.net/logs/unstable/amd64/mmtk_2.7.9-1.build1.log.gz


Regards,

-- 
  ,''`.
 : :'  : Chris Lamb
 `. `'`  la...@debian.org / chris-lamb.co.uk
   `-
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Sep 10 15:18:40 GMT+12 2015
I: pbuilder-time-stamp: 1441941520
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: creating local configuration
I: copying local configuration
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: Mounting /sys
I: policy-rc.d already exists
I: Installing the build-deps
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team 
Description: Dummy package to satisfy dependencies with aptitude - created by 
pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 9), cython, libnetcdf-dev, python-all-dev, python-numpy, 
python-netcdf, python-scientific, python-sphinx (>= 1.0.7+dfsg)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in 
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 20260 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring 
anyway as you requested:
 pbuilder-satisfydepends-dummy depends on cython; however:
  Package cython is not installed.
 pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however:
  Package libnetcdf-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python-all-dev; however:
  Package python-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python-numpy; however:
  Package python-numpy is not installed.
 pbuilder-satisfydepends-dummy depends on python-netcdf; however:
  Package python-netcdf is not installed.
 pbuilder-satisfydepends-dummy depends on python-scientific; however:
  Package python-scientific is not installed.
 pbuilder-satisfydepends-dummy depends on python-sphinx (>= 1.0.7+dfsg); 
however:
  Package python-sphinx is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
The following NEW packages will be installed:
  cython{a} docutils-common{a} fonts-font-awesome{a} fonts-lato{a} 
  hdf5-helpers{a} libblas-common{a} libblas3{a} libcurl3-gnutls{a} 
  libcurl4-gnutls-dev{a} libexpat1{a} libexpat1-dev{a} libgfortran3{a} 
  libgnutls-deb0-28{a} libgssapi-krb5-2{a} libhdf5-8{a} libhdf5-cpp-8{a} 
  libhdf5-dev{a} libhogweed4{a} libidn11{a} libjpeg-dev{a} 
  libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} 
  libjs-modernizr{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} 
  libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} 
  libldap-2.4-2{a} libnetcdf-dev{a} libnetcdf7{a} libnetcdfc7{a} 
  libnettle6{a} libp11-kit0{a} libpython-all-dev{a} libpython-dev{a} 
  libpython-stdlib{a} libpython2.7{a} libpython2.7-dev{a} 
  libpython2.7-minimal{a} libpython2.7-stdlib{a} librtmp1{a} libsasl2-2{a} 
  libsasl2-modules-db{a} libssh2-1{a} libssl1.0.0{a} libtasn1-6{a} 
  mime-support{a} python{a} python-alabaster{a} python-all{a} 
  python-all-dev{a} python-babel{a}