Bug#892199: r-cran-knitr: autopkgtest failure

2018-03-06 Thread Graham Inggs
Source: r-cran-knitr Version: 1.20-1 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Andreas Since the upload of 1.20-1, r-cran-knitr's autopkgtests have been failing [1]. There are new tests that require r-cran-tinytex which is not yet packaged in Debian. Reg

Bug#877419: pandas FTBFS on !x86/ppc64el: test failures

2018-04-12 Thread Graham Inggs
Hi I refreshed and re-enabled Andreas' mark_tests_working_on_intel.patch [1] which was disabled in 0.22.0-1. I additionally marked test_sum_nanops_timedelta and test_timedelta_ops_with_missing_values with pytest.mark.intel which were failing at least on arm64. To address a new failure on big

Bug#805193: aster: FTBFS: Fatal Error: finclude/petscsys.h: No such file or directory

2016-01-24 Thread Graham Inggs
Hi Peter On 13 December 2015 at 01:17, peter green wrote: > On 12/12/15 19:01, peter green wrote: >> >> >> New debdiff attatched, still no intent to NMU. > > Sorry, debdiff at > http://debdiffs.raspbian.org/main/a/aster/aster_11.5.0%2bdfsg2-3%2brpi1.debdiff Thanks for your work on this! If ther

Bug#805193: aster: FTBFS: Fatal Error: finclude/petscsys.h: No such file or directory

2016-01-29 Thread Graham Inggs
Control: tags -1 pending I've committed the fix to git and will upload once libopenmpi1.10 is available (see #813042). -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainer

Bug#811223: FTBFS: perl texi2html: Can't use 'defined(@array)'

2016-02-05 Thread Graham Inggs
Control: tags -1 patch The attached patch was applied in Ubuntu. Description: Fix texi2html for Perl 5.22 Fixes FTBFS for arch:all - Can't use 'defined(@array)' Bug-Debian: https://bugs.debian.org/811223 Author: Graham Inggs Last-Update: 2016-02-05 --- a/doc/texi2html +++

Bug#767338: vtk6: autopkgtest fails on unexpected warning

2016-02-06 Thread Graham Inggs
Hi Anton What happened to this fix? I've just merged vtk6 6.2.0+dfsg1-7 into Ubuntu and had to add it again. Regards Graham -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maint

Bug#814149: add alternative for /usr/bin/dx

2016-02-10 Thread Graham Inggs
Hi Hans-Christoph On 8 February 2016 at 21:25, Hans-Christoph Steiner wrote: > We have just packaged the "Dalvik Explorer" aka android-platform-dalvik > which is always used as the command util 'dx'. Always? IBM's DX has been around since 1991. :) > This conflicts with > OpenDX's /usr/bin/dx,

Bug#813248: libdx4-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2016-02-19 Thread Graham Inggs
Control: severity -1 normal Control: tags -1 confirmed Hi Andreas On 31 January 2016 at 00:04, Andreas Beckmann wrote: > For /usr/share/doc/PACKAGE this may not be problematic as long as both > packages are installed, ship byte-for-byte identical files and are > upgraded in lockstep. But once on

Bug#813248: libdx4-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2016-02-19 Thread Graham Inggs
Control: tags -1 pending Fixed in git [1]. [1] https://anonscm.debian.org/cgit/debian-science/packages/dx.git/commit/?id=b15ad29a500f254fe2638347c9802bae4c9e434a -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bi

Bug#811731: dx: FTBFS with GCC 6: narrowing conversion

2016-02-20 Thread Graham Inggs
Control: tags -1 pending Fixed in git [1]. [1] https://anonscm.debian.org/cgit/debian-science/packages/dx.git/commit/?id=299356490270bd744f16b9cea66251bbcb32969f -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bi

Bug#820448: paraview-dev not installable

2016-04-08 Thread Graham Inggs
Source: paraview Version: 5.0.1+dfsg1-2 Hi Maintainer I found a typo in the dependencies of paraview-dev that make it not installable. Please see attached patch. Regards Graham diff -Nru paraview-5.0.1+dfsg1/debian/changelog paraview-5.0.1+dfsg1/debian/changelog --- paraview-5.0.1+dfsg1/debi

Bug#820450: yade: FTBFS with glibc 2.23: 'isnan' was not declared in this scope

2016-04-08 Thread Graham Inggs
Source: yade Version: 1.20.0-7 Hi Maintainer Yade FTBFS with glibc 2.23 available in Experimental and Ubuntu Xenial. I was able to get yade to build in Ubuntu with the attached patch. There are other occurrences of 'isnan' and 'isinf' inside #ifdefs that I did not replace. I don't know if it w

Bug#816101: petsc: FTBFS on mipsel - broken openmpi breaks petsc build

2016-04-21 Thread Graham Inggs
On 13/04/2016 12:59, Drew Parsons wrote: The failure happens during the test for mipsel-linux-gnu-real (the main build version). It passes the first test using 1 MPI process. It fails during the second test using 2 MPI processes. The test is ex19 in petsc-3.6.3.dfsg2/src/snes/examples/tutorials

Bug#816101: petsc: FTBFS on mipsel - broken openmpi breaks petsc build

2016-04-22 Thread Graham Inggs
On 21 April 2016 at 17:19, Graham Inggs wrote: > This sounds a lot like the problem we have with powerpc, see bug #814183. I > think you may just have been very lucky in which powerpc buildds petsc has > landed on lately. Your luck ran out, the build failed on powerpc [1]. It stopped r

Bug#823816: freecad: New upstream version available

2016-05-09 Thread Graham Inggs
Source: freecad Version: 0.15.4671+dfsg1-4 Severity: wishlist Hi Maintainer A new upstream version 0.16 of FreeCAD is now available [1]. FreeCAD's page on sourceforge now displays the following: WARNING: FreeCAD has moved! FreeCAD code and release files are now hosted on github at https://git

Bug#823839: oce: please rebuild against freeimage 3.17.0

2016-05-09 Thread Graham Inggs
Source: oce Version: 0.17.1-1 Severity: serious Hi Maintainer OCE needs to be rebuilt against the current version of freeimage in order to pick up the correct library paths in shipped CMake files. For example, /usr/lib/x86_64-linux-gnu/oce-0.16/OCE04_VisualizationTargets-relwithdebinfo.cmake

Bug#818814: mlpack: FTBFS with libc 2.23: there are no arguments to 'isnan' that depend on a template parameter

2016-05-10 Thread Graham Inggs
Control: tags -1 patch Hi Maintainer Please find a patch for this issue, as applied in Ubuntu. Regards Graham Description: Fix build with glibc 2.23 Bug: https://github.com/mlpack/mlpack/issues/522 Bug-Debian: https://bugs.debian.org/818814 Origin: upstream, https://github.com/mlpack/mlpack/co

Bug#824541: gmsh: please enable MPI again for architectures where possible

2016-05-17 Thread Graham Inggs
Source: gmsh Version: 2.12.0+dfsg1-2 Severity: wishlist Hi Maintainer In gmsh 2.5.1~beta2~svn12143~dfsg-2, MPI was disabled for certain architectures with the following line in debian/changelog: * [97cda71] Disable MPI on armel, armhf, kfreebsd-amd64, kfreebsd-i386, mips and m

Bug#820450: yade: FTBFS with glibc 2.23: 'isnan' was not declared in this scope

2016-05-22 Thread Graham Inggs
Control: reopen -1 Control: notfixed -1 1.20.0-9 Hi Anton It seems Gert's patch was included in 1.20.0-9, but with my name on it. 1.20.0-9 FTBFS on the Ubuntu buildds with the following error: In file included from /«PKGBUILDDIR»/lib/triangulation/FlowBoundingSphere.hpp:170:0,

Bug#760232: [viennacl] Build dependency on virtual libopencl1 with no default

2014-09-01 Thread Graham Inggs
Source: viennacl Version: 1.5.2-1 Hi Maintainer The viennacl source package has build-dependencies on 'opencl-headers, libopencl1'. Binary package libviennacl-dev has dependencies on the same. Libopencl1 is a virtual package and so should be preceded by a real package. However, package ocl-icd-o

Bug#761528: viennacl should requires opencl-dev

2014-09-18 Thread Graham Inggs
> I believe viennacl should B-D on opencl-dev instead of libopencl1. opencl-dev is a virtual package, so probably 'ocl-icd-opencl-dev | opencl-dev' instead. See #760232. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org

Bug#763909: viewmol: /usr/bin/viewmol missing for most archs

2014-10-03 Thread Graham Inggs
Source: viewmol Version: 2.4.1-20 Severity: serious Hi Maintainer I noticed that /usr/bin/viewmol is only present in the amd64 viewmol package. For all other archs built on the buildds, /usr/bin/viewmol is missing. Excerpt from the i386 build log: make[1]: Entering directory `/«PKGBUILDDIR»/sou

Bug#763909: viewmol: /usr/bin/viewmol missing for most archs

2014-10-27 Thread Graham Inggs
tags 763909 patch thanks So 'getmachine' is looking in the non-multiarch directories for libtiff, libpng, etc. The attached patch works for me locally, but probably needs some more work. If nobody takes this, I'll prepare an NMU at the end of this week. --- a/source/getmachine +++ b/source/getmach

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