Bug#976174: Made an itp

licensed, and does not download anything as part of > > the install process. It has two dependencies: Python and the lynx > > browser. Python 2 and 3 versions are included in the tarball but it is > > presumed that the preferred Python version is now Python 3, so that is > > the defaul

Bug#976174: Made an itp

You created an itp so an intent to package. If not willing to propose a apckage should be an rfp request for package. Ideally you package your app and propose it for review and upload. Requirements are an open source license and package install should not download anything. Only its execution can

Bug#673724: Relicensing done by upstream

Good news, upstream license has been modified after some rewriting (see issue closed https://github.com/jshint/jshint/issues/1234), so should fit for debian now

Bug#933390: ITP: python-ftputil -- high level library for python ftp

Package: wnpp Severity: wishlist Owner: Olivier Sallou X-Debbugs-Cc: debian-de...@lists.debian.org, python-modules-t...@lists.alioth.debian.org * Package name: python-ftputil Version : 3.4 Upstream Author : Stefan Schwarzer * URL : https://ftputil.sschwarzer.net/trac

Bug#924086: ITP: python-irodsclient -- python3 API module for iRODS

Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: python-modules-t...@lists.alioth.debian.org * Package name: python-irodsclient Version : 0.8.1 Upstream Author : The University of North Carolina at Chapel Hill * URL : https://github.com/irods/python

Bug#897614: ITP: gkl

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: gkl Version : 1.0.0 Upstream Author : Intel corporation * URL : *Accelerated kernel library for genomics* * L

Bug#897610: ITP: gatk-native-bindings

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: gatk-native-bindings Version : 1.0.0 Upstream Author : GATK authors * URL : *https://github.com/broadinstitute/gatk-

Bug#777089: Preconditions for python-moto finished - help needed to build package itself

- Mail original - > De: "Andreas Tille" > À: 777...@bugs.debian.org > Cc: debian-pyt...@lists.debian.org, "Debian Science List" > > Envoyé: Vendredi 2 Février 2018 09:16:55 > Objet: Preconditions for python-moto finished - help

Bug#777089: Next python-mote pre-condition - issue with pybuild: python-backports.tempfile conflicting python-backports.weakref

- Mail original - > De: "Olivier Sallou" <olivier.sal...@irisa.fr> > À: "Andreas Tille" <andr...@an3as.eu> > Cc: debian-pyt...@lists.debian.org, "Debian Science List" > <debian-scie...@lists.debian.org>, 777...@bugs.debian.or

Bug#777089: Next python-mote pre-condition - issue with pybuild: python-backports.tempfile conflicting python-backports.weakref

- Mail original - > De: "Andreas Tille" > À: debian-pyt...@lists.debian.org, "Debian Science List" > , 777...@bugs.debian.org > Envoyé: Lundi 22 Janvier 2018 15:04:10 > Objet: Re: Next python-mote pre-condition - issue with pybuild: >

Bug#872451: biomaj3 -- BioMAJ3 workflow library

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3 Version : 3.1.3 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : https://github.com/gen

Bug#872450: biomaj3-cli -- BioMAJ3 client

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-cli Version : 3.0.7 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : https://github.

Bug#872449: ITP: biomaj3-daemon -- BioMAJ3 daemon library

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-daemon Version : 3.0.7 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : https://github.

Bug#872447: ITP: biomaj3-process -- BioMAJ3 process library

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-process Version : 3.0.7 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : https://github.

Bug#872446: ITP: biomaj3-download -- BioMAJ3 download library

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-download Version : 3.0.9 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : https:

Bug#872444: ITP: biomaj3-zipkin -- BioMAJ3 zipkin library

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-zipkin Version : 0.2.2 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : http://biomaj.

Bug#872445: ITP: biomaj3-user -- BioMAJ3 user library

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-user Version : 3.0.6 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : http://biomaj.

Bug#826550: ITP: python-consul -- client for Consul Service Discovery

ok, I have upoaded python3 version (policy specifies to upload python3 only) Le jeu. 17 août 2017 à 12:41, Thomas Goirand <z...@debian.org> a écrit : > On 08/17/2017 11:17 AM, olivier sallou wrote: > > Hi, > > I need the python3 consul client for a package, what is your prog

Bug#872409: ITP: biomaj3-core -- BioMAJ3 core library

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-core Version : 3.0.9 Upstream Author : Olivier Sallou <olivier.sal...@irisa.fr> * URL : http://biomaj.

Bug#872344: ITP: py-zipkin -- Library for using Zipkin in Python

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> * Package name: python-py-zipkin Version : 0.9.0 Upstream Author : Yelp, Inc. <opensource+py-zip...@yelp.com> * URL : https://github.com/Yelp/py_zipkin * License

Bug#872343: ITP: thriftpy -- Pure python implementation of Apache Thrift

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> * Package name: thriftpy Version : 0.3.9 Upstream Author : Lx Yu <i...@lxyu.net> * URL : https://thriftpy.readthedocs.org/ * License : MIT Programming Lang: Python

Bug#851824: python 2 /3 binaries

binaries are problems in Debian when managing modules with binaries. Solution is usually to rename binary in one of the modules For humanfriendly, you would get humanfriendly in python2 package and humanfriendly3 in pythno3 for example, each with its own manpage. Not very cool, as you need, in

Bug#826550: any progress?

Hi, I would need python(3)-consul for a package, is there any progress on this package? Thanks Olivier

Bug#851366: ITP: python-biomaj3 -- package for designing hybrid enrichment probes

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> * Package name: biomaj3 Version : 3.0.20 Upstream Author : Olivier Sallou * URL : *https://github.com/genouest/biomaj <https://github.com/genouest/biomaj>* * License

Bug#851342: ITP: baitfisher -- package for designing hybrid enrichment probes

Package: wnpp Severity: wishlist Owner: Olivier Sallou <osal...@debian.org> * Package name: baitfisher Version : 1.0 Upstream Author : Christoph Mayer * URL : https://github.com/cmayer/BaitFisher-package * License : GPL Programming Lang: C++ Descr

Bug#851256: ITP: bedops -- high-performance genomic feature operations

Package: wnpp Severity: wishlist Owner: root * Package name: bedops Version : 2.4.20 Upstream Author : Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds * URL : https://github.com/bedops/bedops * License : GPL Programming Lang: C++

Bug#829566: ITP: python-dictobj -- python library to access dictionary keys as instance

Package: wnpp Severity: wishlist Owner: Olivier Sallou <olivier.sal...@irisa.fr> * Package name : python-dictobj Version : 0.4 Upstream Author : William Grim * URL : https://github.com/grimwm/py-dictobj * License : Apache 2.0 Programming Lang: Python Description : python l

Bug#829565: ITP: python-dictobj -- python library to access dictionary keys as instance attributes

Package: wnpp Severity: wishlist Owner: Olivier Sallou <olivier.sal...@irisa.fr> * Package name: python-dictobj Version : 0.4 Upstream Author : William Grim * URL : https://github.com/grimwm/py-dictobj * License : Apache 2.0 Programming Lang:

Bug#796487: ITP: repeatmasker-recon -- indentification of repeat families from biological sequences

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: repeatmasker-recon Version : 1.08 Upstream Author : Institute for Systems Biology * URL : http://www.repeatmasker.org/ * License : GPL Programming Lang: C, Perl

Bug#796363: ITP: libsis-base-java -- supplies some utility classes needed for libraries like sis-jhdf5

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libsis-base-java Version : 14.12.0 Upstream Author : ETH Zuerich, CISD * URL : https://wiki-bsse.ethz.ch/display/JHDF5/Download+Page * License : Apache Programming Lang

Bug#796390: ITP: libsis-jhdf5-java -- HDF library for Java

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libsis-jhdf5-java Version : 14.12.1 Upstream Author : ETH Zuerich CISD * URL : http://svncisd.ethz.ch/repos/cisd/jhdf5/tags/release/ * License : Apache Programming Lang

Bug#796289: ITP: python-eta -- python module to generate progress bar for CLI

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: python-eta Version : 0.9.7 Upstream Author : Marcus Breese * URL : https://github.com/mbreese/eta * License : BSD Programming Lang: Python Description : python

Bug#795865: ITP: bio-rainbow -- RAD-seq related clustering and de novo assembly

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: bio-rainbow Version : 2.4.0 Upstream Author : Jue Ruan ruan...@gmail.com * URL : http://sourceforge.net/projects/bio-rainbow/ * License : GPL Programming Lang: C, Perl

Bug#795822: ITP: python-cutadapt -- cleaner for biological high sequencing data reads

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr X-Debbugs-Cc: debian-...@lists.debian.org * Package name: python-cutadapt Version : 1.8.3 Upstream Author : Marcel Martin marcel.mar...@scilifelab.se * URL : http://pypi.python.org/pypi

Bug#783833: Fwd: Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

Le ven. 1 mai 2015 10:03, Andreas Tille andr...@an3as.eu a écrit : Hi Olivier, On Thu, Apr 30, 2015 at 03:16:51PM +, olivier sallou wrote: The OBITools package is a set of programs specifically designed for analyzing NGS data in a DNA metabarcoding context, taking into account taxonomic

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

Le jeu. 30 avr. 2015 à 23:57, Ben Hutchings b...@decadent.org.uk a écrit : On Thu, 2015-04-30 at 16:23 +, olivier sallou wrote: [...] Nope, not yet. However, as I discussed with one guy of the team some time ago, I do not think there is any plan to go to python3. This is an academic

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: python-obitools Version : 1.1.16 Upstream Author : Eric Coissac * URL : http://metabarcoding.org//obitools/ * License : CeCILL-V2 Programming Lang: Python Description

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

Le jeu. 30 avr. 2015 à 17:42, Scott Kitterman deb...@kitterman.com a écrit : On Thursday, April 30, 2015 05:13:03 PM Olivier Sallou wrote: Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: python-obitools Version : 1.1.16

Bug#776704: ITP: biojava4-live -- Java API to biological data and applications

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: biojava4-live Version : 4.0.0 Upstream Author : biojava team * URL : *http://biojava.org/wiki/Main_Page http://biojava.org/wiki/Main_Page* * License : LGPL-2

Bug#776722: ITP: macsyfinder -- Macromolecular system detection

Package: wnpp Severity: wishlist Owner: Bertrand Neron bne...@pasteur.fr * Package name: macsyfinder Version : 1.0.2 Upstream Author : Abby SS, Néron B, Ménager H, Touchon M, Rocha * URL : https://github.com/gem-pasteur/macsyfinder * License : GPL-3.

Bug#756291: (no subject)

Subject: ITP: prodigal -- microbial (bacterial and archaeal) gene finding program Package: wnpp Owner: Olivier Sallou olivier.sal...@irisa.fr Severity: wishlist * Package name: prodigal Version : 2.60 Upstream Author : Doug Hyatt * URL : http://prodigal.ornl.gov

Bug#737098: ITP: discosnp -- discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: discosnp Version : 1.0.1 Upstream Author : INRIA * URL : http://colibread.inria.fr/discosnp/ * License : CeCILL Programming Lang: C Description : discovering

Bug#737099: ITP: mapsembler2 -- bioinformatics targeted assembly software

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: mapsembler2 Version : 2.0.5 Upstream Author : INRIA * URL : https://colibread.inria.fr/mapsembler2/ * License : CeCILL Programming Lang: C Description

Bug#735158: ITP: minia -- short-read assembler

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: minia Version : 1.6067 Upstream Author : Rayan * URL : http://minia.genouest.org * License : CeCILL Programming Lang: C Description : short-read assembler

Bug#732990: ITP: readseq2 -- readseq2 is a rewrite of readseq converter

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: readseq2 Version : 2.1.30 Upstream Author : D. Gilbert gilbe...@bio.indiana.edu * URL : http://iubio.bio.indiana.edu/soft/molbio/readseq/java/ * License : Public

Bug#705128: ITP: libcofoja-java -- Java framework with annotation processing to provide runtime checkings

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: libcofoja-java Version : 1.0~r139 Upstream Author : Google Inc * URL : https://code.google.com/p/cofoja/ * License : LGPL Programming Lang: Java Description

Bug#700859: ITP: mobyle-tutorials -- Tutorial descriptors for the mobyle package

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: mobyle-tutorials Version : 1.5.0 Upstream Author : Mobyle team * URL : ftp://ftp.pasteur.fr/pub/GenSoft/projects/mobyle/ * License : LGPL-2+ Programming Lang: XML

Bug#693094: RFH: cloud-init -- configuration and customization of cloud instances

2012/11/13 Charles Plessy ple...@debian.org Package: wnpp Severity: normal I request assistance with maintaining the cloud-init package. The package description is: System to handle early initialization of a cloud instance. Cloud-init can for example set a default locale and a host

Bug#670353: Some (minimal?) Java help needed (Was: Bug#670353: ITP: fastqc -- quality control for next generation sequencing data)

Le 11/8/12 8:40 AM, Olivier Sallou a écrit : Le 11/7/12 3:29 PM, Andreas Tille a écrit : Hi, I stumbled upon this one and did some work on it in Vcs-Svn: http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/ It is close to lintian clean now but there is some

Bug#670353: Some (minimal?) Java help needed (Was: Bug#670353: ITP: fastqc -- quality control for next generation sequencing data)

Le 11/8/12 8:40 AM, Olivier Sallou a écrit : Le 11/7/12 3:29 PM, Andreas Tille a écrit : Hi, I stumbled upon this one and did some work on it in Vcs-Svn: http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/ It is close to lintian clean now but there is some

Bug#670353: Some (minimal?) Java help needed (Was: Bug#670353: ITP: fastqc -- quality control for next generation sequencing data)

generation sequencing data The Debian Med source code repository has some functional (not lintian clean) package in trunk/packages/babraham/fastqc. -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438

Bug#686077: ITP: libsnappy1.0.3-java -- Fast Java compressor/decompressor, port of Snappy

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libsnappy1.0.3-java Version : 1.0.3-rc3 Upstream Author : Xerial.org * URL : https://code.google.com/p/snappy-java/downloads/list?can=4q=colspec=Filename+Summary+Uploaded

Bug#683291: ITP: soapdenovo -- short-read assembly method that can build a de novo draft assembly for the human-sized genomes

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: soapdenovo Version : 1.0.5 Upstream Author : BGI-Shenzhen * URL : http://soap.genomics.org.cn/soapdenovo.html * License : GPL3+ Programming Lang: C Description

Bug#674269: waiting for source versioning

I have sent an email to upstream author to get a versioning between binaries and sources. Sources are not delivered, only in SVN, and not tagged. We can watch new version via download page on binaries but we cannot match a binary with a source SVN commit or tag. -- gpg key id: 4096R/326D8438

Bug#678373: ITP: logol -- Pattern matching tool for biological sequences

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: logol Version : 1.5.0 Upstream Author : Olivier Sallou olivier.sal...@irisa.fr * URL : http://logol.genouest.org * License : CeCILL Programming Lang: Java, Prolog

Bug#674265: ITP: biojava3 -- Java API to develop tools for bioinformatics research rewrote from biojava1

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: biojava3 Version : 3.0.4 Upstream Author : BioJava team * URL : http://www.biojava.org/ * License : LGPL Programming Lang: Java Description : Java API to develop

Bug#674269: ITP: libforester-java -- library for phylogenomics and evolutionary biology research

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: forester Version : 0.955 * URL : http://code.google.com/p/forester/ * License : LGPL Programming Lang: Java Description : library for phylogenomics

Bug#665341: Fwd: Licensing of an old Java code

Upstream author licensed impacted file under GLP v3, leveraging issue. -- Forwarded message -- From: Cay Horstmann c...@horstmann.com Date: 2012/3/24 Subject: Re: Licensing of an old Java code To: olivier sallou olivier.sal...@gmail.com I attach the latest version that I have

Bug#665341: ITP: libjlapack-java -- LAPACK numerical subroutines translated from Fortran to Java

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libjlapack-java Version : 0.8 Upstream Author : Keith Seymour * URL : http://icl.cs.utk.edu/f2j/ * License : BSD Programming Lang: Fortran, Java Description

Bug#665343: ITP: libnetlib-java -- collection of mission-critical software components for linear algebra system translated from Fortran to Java

Package: wnpp Severity: wishlist Owner: Olivier Sallou osal...@debian.org * Package name: libnetlib-java Version : 0.9.3 Upstream Author : Sam Halliday sam.halli...@gmail.com * URL : http://code.google.com/p/netlib-java * License : BSD Programming Lang

Bug#665341: License issue in JLapack

Arrggh!! The file src/util/org/j_paine/formatter/CJFormat.java presents a non compatible license: /*^M * Gary Cornell and Cay S. Horstmann, Core Java (Book/CD-ROM)^M * Published By SunSoft Press/Prentice-Hall^M * Copyright (C) 1996 Sun Microsystems Inc.^M * All Rights Reserved. ISBN

Bug#665341: Licensing of an old Java code

? Regarding the nature of this particular code, I don't think this would an issue for you. If you agree to do so, can you please answer this email with a format agreement as well as the selected licence. Regards Olivier Sallou -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint

Bug#657184: ITP: j2f -- Java Application Programming Interfaces (APIs) to numerical libraries originally written in Fortran

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: j2f Version : 0.8.1 Upstream Author : Keith Seymour (seym...@cs.utk.edu) * URL : http://sourceforge.net/projects/f2j/ * License : GPL Programming Lang: C

Bug#654603: ITP: gassst -- Global Alignment Short Sequence Search Tool

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: gassst Version : 1.28 Upstream Author : Dominique Lavanier dominique.lavan...@irisa.fr * URL : http://www.irisa.fr/symbiose/projects/gassst/ * License : CeCILL v2

Bug#652031: Add more descriptive info on what is clustalo package

Clustal-Omega is a general purpose multiple sequence alignment (MSA) program for proteins. It produces high quality MSAs and is capable of handling data-sets of hundreds of thousands of sequences in reasonable time. In default mode, users give a file of sequences to be aligned and these are

Bug#652031: ITP: clustalo -- Clustal Omega is the latest addition to the Clustal family

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: clustalo Version : 1.0.3 Upstream Author : clust...@ucd.ie * URL : http://www.clustal.org/omega/ * License : GPL Programming Lang: C Description : Clustal

Bug#647416: ITP: libbio-chado-schema-perl -- object-relational mapping layer for use with the GMOD Chado database schema

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: libbio-chado-schema-perl Version : 0.09010 Upstream Author : Robert Bruels rbu...@cpan.org * URL : http://search.cpan.org/~rbuels/Bio-Chado-Schema/lib/Bio/Chado/Schema.pm

Bug#647417: ITP: libdbix-class-tree-nestedset-perl -- Manage trees of data using the nested set model

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: libdbix-class-tree-nestedset-perl Version : 0.10 Upstream Author : Ian Docherty pa...@iandocherty.com * URL : http://search.cpan.org/~icydee/DBIx-Class-Tree-NestedSet-0.10

Bug#644882: package name

Hi, maybe package name should be libtorque-drmaa. Debian contains torque-xxx packages for Torque stuff, and as drmaa is a library I think it should be name according to this scheme. drmaa lib for sge is libdrmaa(-xxx for java etc...), so it would also be coherent. Regards, Olivier -- gpg key

Bug#644137: ITP: ruby-cassiopee -- provide methods to search exact match or approximate matches with Hamming or edit distance

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: ruby-cassiopee Version : 0.1.8 Upstream Author : Olivier Sallou olivier.sal...@irisa.fr * URL : https://rubygems.org/gems/cassiopee * License : GPL Programming

Bug#644136: ITP: ruby-text -- collection of text match and analysis algorithms

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: ruby-text Version : 1.1.2 Upstream Author : Paul Battley, Michael Neumann, Tim Fletcher * URL : https://rubygems.org/gems/Text * License : GPL Programming Lang

Bug#639868: ITP: chado -- Chado is a relational database schema that underlies many GMOD installations.

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: chado Version : 1.11 Upstream Author : GMOD * URL : http://gmod.org/wiki/Chado_-_Getting_Started * License : Artistic License 2.0 Programming Lang: Perl,SQL

Bug#632174: set owner

owner: olivier.sal...@irisa.fr -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Bug#632174: set owner to myself

Owner: olivier.sal...@irisa.fr -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#637230: ITP: mobyle -- Mobyle is a wbe portal and framework to provide web interfaces to command-line tools. It is designed though not limited for bioinfomatics.

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: mobyle Version : 1.0.0 Upstream Author : Herve Menager herve.mena...@pasteur.fr * URL : https://projets.pasteur.fr/wiki/mobyle/download * License : GPL Programming

Bug#637109: ITP: pycaptcha -- collection of Python modules implementing CAPTCHAs

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: pycaptcha Version : 2.4 Upstream Author : Micah Dowty micah at navi cx * URL : http://pypi.python.org/pypi/PyCAPTCHA/0.4 * License : MIT Programming Lang: Python

Bug#632174: Fwd: font pointers license

I tried to clarify license on pointers fonts embedded in upstream software. Author is ok to allow modifications on sources. - Mail transféré - De: Russ Rowlett rowl...@email.unc.edu À: Olivier Sallou olivier.sal...@irisa.fr Envoyé: Lundi 1 Août 2011 23:04:46 Objet: RE: font pointers

Bug#632174: Fwd: RE: font pointers license

Message original Sujet: RE: font pointers license Date : Tue, 2 Aug 2011 12:36:41 + De :Rowlett, Russ rowl...@email.unc.edu Pour : Olivier Sallou olivier.sal...@irisa.fr Yes, that would be OK. Russ From: Olivier Sallou

Bug#632174: ITP:circos -- software package for visualizing data and information in a circular layout

/intro/circular_approach --- this makes Circos ideal for exploring relationships between objects or positions Upstream author: Martin Krzywinski mart...@bcgsc.ca -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R

Bug#632174: add license info

License: GPL2+ -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-wnpp-requ

Bug#632086: ITP:libmath-vecstat-perl --Some basic numeric stats on vectors

Package: wnpp Severity: wishlist X-Debbugs-CC:debian-...@lists.debian.org Language: Perl Homepage: http://search.cpan.org/dist/Math-VecStat/ Description: This package offers some basic statistics on vectors (min,max,average,) Dependencies: None Upstream author: Andrea Spinelli -- Olivier

Bug#624394: ITP:ncbi-blast-plus

Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr Package name: ncbi-blast-plus Version : 2.2.25 URL : http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=WebPAGE_TYPE=BlastDocsDOC_TYPE=Download License : public domain Programming Lang: C

Bug#429610: gbrowse2 licensing issue fixed

I could have a look for dropdown css. License is GNU GPL. It comes from http://lwis.net/free-css-drop-down-menu/ For readseq.c, I decided to remove contrib directory from source, while other contribs are not clear from license point of view. Contribs are not required for software usage. --

Bug#618689: ITP: squizz bioinformatics sequence converter tool

Package: wnpp Severity: wishlist X-Debbugs-CC: debian-...@lists.debian.org Maintainer: Olivier Sallou olivier.sal...@irisa.fr Language: C License: GNU v2 Upstream Author: Nicolas Joly nj...@pasteur.fr Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/ Description: Squizz is a sequence

Bug#429610: Gbrowse2 licensing issues, trigger upstream team at sourceforge

I created a support request at upstream source to get more info on some licensing issues in files. I join mail exchange and reference Support Requests item #3201863, was opened at 2011-03-07 08:01 Message generated for change (Settings changed) made by scottcain You can respond by visiting:

Bug#429610: use debian javascript packages instead of included ones

Package has been update to use javascript libraries packaged in Debian (prototype/scriptaculous) after maintainer has updated them on sid. -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to

Bug#429610: GBrowse2 packaging

. Regards Olivier Le 2/23/11 2:36 PM, Olivier Sallou a écrit : Hi, I repackaged gbrowse2, I gonna update the svn of gbrowse on trunk I will let you know once ready to have a look ... Olivier Le 2/6/11 1:52 PM, Charles Plessy a écrit : Le Sun, Feb 06, 2011 at 10:49:42AM +0100, Olivier Sallou

Bug#429610: GBrowse2 packaging

Hi, I repackaged gbrowse2, I gonna update the svn of gbrowse on trunk I will let you know once ready to have a look ... Olivier Le 2/6/11 1:52 PM, Charles Plessy a écrit : Le Sun, Feb 06, 2011 at 10:49:42AM +0100, Olivier Sallou a écrit : I am looking at GBrowse2 packaging. If I succeed

Bug#609038: ITP: biomaj -- a biological databank update and processing tool

for working on this package Andreas. On Wed, Jan 05, 2011 at 06:14:27PM +0100, Olivier Sallou wrote: Package: biomaj Version: 1.1.0 Severity: wishlist I want to package the Biomaj tool (http://biomaj.genouest.org) for Debian. The tool is already on production on several servers worldwide

Bug#609038: BioMAJ additional information

Package name: biomaj Version : 1.1.0 Upstream Author : Olivier Sallou olivier.sal...@irisa.fr Programming Lang: Java License: CeCILL, french equivalent of GNU GPL Description: Biological banks updater BioMAJ downloads remote biological data banks, check their status