Bug#939537: ITP: vg -- tools for working with genome variation graphs

2020-01-13 Thread Andreas Tille
Hi Michael, On Mon, Jan 13, 2020 at 04:47:02PM +0100, Michael Crusoe wrote: > I've merged and pushed all my changes, the build finishes and the regular + > autopkgtests pass. Sounds good. > TODO: > 1. Send more patches upstream > 2. Review the following patches and see if we can eliminate even

Bug#939537: ITP: vg -- tools for working with genome variation graphs

2020-01-13 Thread Michael Crusoe
I've merged and pushed all my changes, the build finishes and the regular + autopkgtests pass. TODO: 1. Send more patches upstream 2. Review the following patches and see if we can eliminate even more code copies: #use_packaged_vcflib # 1.0.0+dfsg-1 is incompatible with the bundled htslib

Bug#939537: ITP: vg -- tools for working with genome variation graphs

2020-01-13 Thread Michael Crusoe
I have 1.20.0 in my local repository, not yet pushed According to my build logs that did not succeed either. I'll update my local copy to 1.21 as well, and then I'll compare the patch modifications; pushing up the diff if that seems useful On Sun, Jan 12, 2020 at 11:43 AM Andreas Tille wrote:

Bug#939537: ITP: vg -- tools for working with genome variation graphs

2020-01-12 Thread Andreas Tille
Hi Michael, On Fri, Sep 06, 2019 at 02:16:16PM +0900, Michael R. Crusoe wrote: > * Package name: vg > Version : 1.18.0+ds by chance I stumbled upon that package. I have no real interest in it but I was wondering about the status of this ITP. Upstream is meanwhile at 1.21.0 and

Bug#939537: ITP: vg -- tools for working with genome variation graphs

2019-09-05 Thread Michael R. Crusoe
Package: wnpp Severity: wishlist Subject: ITP: vg -- tools for working with genome variation graphs Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: vg Version : 1.18.0+ds Upstream Author : Copyright: © 2014 Erik Garrison * URL :