Bug#776654: ITP: avro-java -- Apache Avro data serialization system

2015-01-30 Thread Emmanuel Bourg
Package: wnpp
Severity: wishlist
Owner: Emmanuel Bourg ebo...@apache.org

* Package name: avro-java
  Version : 1.7.7
  Upstream Author : The Apache Software Foundation
* URL : http://avro.apache.org
* License : Apache-2.0
  Programming Lang: Java
  Description : Apache Avro data serialization system

Apache Avro is a data serialization system providing:
  * Rich data structures.
  * A compact, fast, binary data format.
  * A container file, to store persistent data.
  * Remote procedure call (RPC).
  * Simple integration with dynamic languages. Code generation is not required
to read or write data files nor to use or implement RPC protocols. Code
generation as an optional optimization, only worth implementing
for statically typed languages.

Upstream support multiple languages but this package will only focus
on the Java part which is required to package Hadoop.


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Bug#776655: ITP: rna-star -- ultrafast universal RNA-seq aligner

2015-01-30 Thread Andreas Tille
Package: wnpp
Severity: wishlist
Owner: Andreas Tille ti...@debian.org

* Package name: rna-star
  Version : 2.4.0i
  Upstream Author : Alexander Dobin do...@cshl.edu
* URL : https://github.com/alexdobin/STAR
* License : MIT
  Programming Lang: C++
  Description : ultrafast universal RNA-seq aligner
 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of 50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.

This package is maintained by the Debian Med team at
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/rna-star/trunk/


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Bug#768968: ITP: pyuca -- Python implementation of the Unicode Collation Algorithm (UTS-10)

2015-01-30 Thread Daniel Stender
The package is in the DPMT repo yet for collaborative maintenance
(still SVN for now).

Please see:
http://anonscm.debian.org/viewvc/python-modules/packages/pyuca/trunk/

A fresh package is uploaded to Mentors.

Buildlog:
http://www.danielstender.com/buildlogs/pyuca_1.0-1_amd64-20150130-1703.build

Thank you very much,
Daniel Stender

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46CB1CA89EA3B74376761DB915E09AF4DF5182C8


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Bug#776678: ITP: python-screed -- short nucleotide read sequence utils in Python

2015-01-30 Thread Andreas Tille
Package: wnpp
Severity: wishlist
Owner: Andreas Tille ti...@debian.org

* Package name: python-screed
  Version : 0.7.1
  Upstream Author : Michael R. Crusoe michael.cru...@gmail.com
* URL : https://screed.readthedocs.org
* License : BSD-3-Clause
  Programming Lang: Python
  Description : short nucleotide read sequence utils in Python
 Screed parses FASTA and FASTQ files, generates databases, and lets you query
 these databases. Values such as sequence name, sequence description, sequence
 quality, and the sequence itself can be retrieved from these databases.


This ITP actually belongs to Michael R. Crusoe who tried to send it
on a host without SMTP and so I'm proxying it.  The package is
team maintained by the Debian Med team anyway at
  Vcs-Git: git://anonscm.debian.org/debian-med/python-screed.git


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Bug#610087: RFP theme hospital

2015-01-30 Thread Christoph Korn
Hi,

a dependency cannot be set because these packages do not yet exist.
But I can add a Recommends.

Also I am not planning to upstream to Debian.

Best regards
Christoph Korn

Am 28.01.2015 um 12:48 schrieb Alexandre Detiste:
 Hi,
 
 Do you have any plan to one day upstream the package corsix-th at GetDeb in 
 Debian ?
 
 Support for automaticaly packaging the data from the demo and full versions
 into a proper .deb has been recently added to game-data-packager;
 see git master: 
 http://anonscm.debian.org/cgit/pkg-games/game-data-packager.git/tree/data/theme-hospital.yaml
 
 This will someday trickle down to unstable  then Ubuntu.
 
 You can already add a
 Depends: theme-hospital-full-data | theme-hospital-demo-data | 
 game-data-packager
 control rule to your package to make your users life easier.
 (or it could be a Recommends:, depending on your local policy)
 
 Alexandre Detiste
 


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Bug#776601: marked as done (ITP: python-geojson -- Python bindings and utilities for GeoJSON)

2015-01-30 Thread Debian Bug Tracking System
Your message dated Fri, 30 Jan 2015 17:42:02 +
with message-id e1yhfzy-0002yj...@quantz.debian.org
and subject line closing ITP: python-geojson -- Python bindings and utilities 
for GeoJSON
has caused the Debian Bug report #776601,
regarding ITP: python-geojson -- Python bindings and utilities for GeoJSON
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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---BeginMessage---
Package: wnpp
Owner: Johan Van de Wauw johan.vandew...@gmail.com
Severity: wishlist
X-Debbugs-CC: debian-de...@lists.debian.org

* Package name: python-geojson
  Version : 1.0.9
  Upstream Author : Corey Farwell cor...@rwell.org
* URL : http://geopython.github.com/OWSLib/
* License : BSD-3-Clause
  Programming Lang: Python
  Description : Python 2 bindings and utilities for GeoJSON

This library contains:

- Functions for encoding and decoding GeoJSON formatted data
- Classes for all GeoJSON Objects
- An implementation of the Python geo_interface Specification

This is the Python 2 version of the library
---End Message---
---BeginMessage---
Please retitle bug 690833 from RFP to ITP and set yourself as the owner.---End Message---


Processed: scythe: block ITP 776179 by RFS 776539

2015-01-30 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 block 776179 by 776539
Bug #776179 [wnpp] ITP: scythe -- Bayesian adaptor trimmer for sequencing reads
776179 was not blocked by any bugs.
776179 was not blocking any bugs.
Added blocking bug(s) of 776179: 776539
 stop
Stopping processing here.

Please contact me if you need assistance.
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Processed (with 1 errors): owner 775238 !

2015-01-30 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 owner 775238 !
Bug #775238 [wnpp] ITP: svg.path -- Python library providing SVG path
Owner recorded as Daniel Stender deb...@danielstender.com.
 retitle 775238 ITP: svg.path -- Python library providing SVG path
Bug #775238 [wnpp] ITP: svg.path -- Python library providing SVG path
Ignoring request to change the title of bug#775238 to the same title
 objects and parser
Unknown command or malformed arguments to command.
 thanks
Stopping processing here.

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Processed: 3270font: block ITP 776449 by RFS 776534

2015-01-30 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 block 776449 by 776534
Bug #776449 [wnpp] ITP: 3270font -- monospaced font based on IBM 3270 terminals
776449 was not blocked by any bugs.
776449 was not blocking any bugs.
Added blocking bug(s) of 776449: 776534
 stop
Stopping processing here.

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Bug#776690: ITP: libnet-syslog-perl -- Perl module for sending syslog messages to remote server

2015-01-30 Thread Alexander Zangerl
Package: wnpp
Severity: wishlist
Owner: Alexander Zangerl a...@debian.org

* Package name: libnet-syslog-perl
  Version : 0.04
  Upstream Author : Les Howard l...@lesandchris.com
* URL : http://search.cpan.org/dist/Net-Syslog/
* License : Artistic
  Programming Lang: Pure Perl
  Description : Perl module for sending syslog messages to remote server

 Net::Syslog implements the UDP syslog forwarding protocol (RFC 5426).
 It is not intended to replace the Sys::Syslog or Unix::Syslog modules, but 
 instead provides a method of using syslog when a local syslogd is 
 unavailable or when you need to send messages directly to a remote syslogd.


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Bug#776650: ITP: wmget -- Background download manager in a Window Maker dockapp

2015-01-30 Thread Doug Torrance
Package: wnpp
Severity: wishlist
Owner: Doug Torrance dtorra...@monmouthcollege.edu

* Package name: wmget
  Version : 0.6.0
  Upstream Author : Aaron Trickey aa...@amtrickey.net
* URL : http://amtrickey.net/wmget/
* License : Expat
  Programming Lang: C
  Description : Background download manager in a Window Maker dockapp

wmget is a dock app for the GNU Window Maker window manager
(or one of the many other WM's which support dockapps) which
makes it more convenient to perform long downloads in the background.
It uses the excellent libcurl library, part of the cURL automated-download
program, to perform file retrieval

wmget was previously orphaned and later removed from Debian [1], but I intend
to maintain it.

[1] https://packages.qa.debian.org/w/wmget/news/20100917T163914Z.html


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Bug#716766: marked as done (ITA: ilmbase -- several utility libraries from ILM)

2015-01-30 Thread Debian Bug Tracking System
Your message dated Fri, 30 Jan 2015 10:03:27 +
with message-id e1yh8qb-000784...@franck.debian.org
and subject line Bug#716766: fixed in ilmbase 1.0.3+dfsg-3
has caused the Debian Bug report #716766,
regarding ITA: ilmbase -- several utility libraries from ILM
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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---BeginMessage---
Package: wnpp
Severity: normal

Hello,

I am requesting an an adopter for the ilmbase and openexr packages. I
myself adopted this because it's needed for hugin but this needs
somebody with better C++ foo than me.

Debian is several upstream versions behind, which is caused among
other things because upstream develops on on AMD64 and it looks like
no testing on other archs (like e.g. ix86) is done. Experimental has
1.0.3 which has a test-failure on ix86 (it is supposed to be fixed by
disabling optimization.)

2.0.1 has recently been released and I am not convinced the dynamic
libraries are set up correctly there. Upstream is mixing libtool's
-release with -version-info and ends up with:
lrwxrwxrwx 1  libIlmThread-2_0.so.10 - libIlmThread-2_0.so.10.0.1
-rwxr-xr-x 1  libIlmThread-2_0.so.10.0.1
lrwxrwxrwx 1  libIlmThread.so - libIlmThread-2_0.so.10.0.1

I think there shouldn't be any libIlmThread.so here, but only a
libIlmThread-2_0.so. Anyway I am not totally ssure this is broken but
it might need fixing and making upstream understand.

thanks, cu Andreas

-- 
`What a good friend you are to him, Dr. Maturin. His other friends are
so grateful to you.'
`I sew his ears on from time to time, sure'


signature.asc
Description: Digital signature
---End Message---
---BeginMessage---
Source: ilmbase
Source-Version: 1.0.3+dfsg-3

We believe that the bug you reported is fixed in the latest version of
ilmbase, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 716...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Mathieu Malaterre ma...@debian.org (supplier of updated ilmbase package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Fri, 30 Jan 2015 09:14:32 +0100
Source: ilmbase
Binary: libilmbase7 libilmbase-dev
Architecture: source amd64
Version: 1.0.3+dfsg-3
Distribution: experimental
Urgency: low
Maintainer: Debian PhotoTools Maintainers 
pkg-phototools-de...@lists.alioth.debian.org
Changed-By: Mathieu Malaterre ma...@debian.org
Description:
 libilmbase-dev - development files for IlmBase
 libilmbase7 - several utility libraries from ILM used by OpenEXR
Closes: 716766
Changes:
 ilmbase (1.0.3+dfsg-3) experimental; urgency=low
 .
   * Update d/watch to use the one with signature. Update: #776558
   * Fix clean rule
   * Import symbols file from version 1.0.1  1.0.3
   * Remove Andreas Metzler. Closes: #716766
 Thanks for your hard work !
   * Fix vcs-field-not-canonical, bump Std-Vers to 3.9.6
 No changes needed
Checksums-Sha1:
 db43ea0758d22e685e0d7ab2a52b4a151574258b 2088 ilmbase_1.0.3+dfsg-3.dsc
 55c31f20f7550f45b5bbad497be34079022c3520 9936 
ilmbase_1.0.3+dfsg-3.debian.tar.xz
 3044ff60209342c5363930b6fbf345b1b46bded2 85716 
libilmbase7_1.0.3+dfsg-3_amd64.deb
 f341aada6d638761e6d575ac5eae0ef0db137c79 144554 
libilmbase-dev_1.0.3+dfsg-3_amd64.deb
Checksums-Sha256:
 4555e0c7dc302d79c9f85bb785199d4b33f713c91be753eb68dde6e7f1f1f265 2088 
ilmbase_1.0.3+dfsg-3.dsc
 a1ea98107567045012de81b41fc35a8513a7b9e35508c92c86a08073b8e44e7f 9936 
ilmbase_1.0.3+dfsg-3.debian.tar.xz
 6aeb608ad4526ec3ef3dee00042d77080ab3487601bb3d3d2d8f249b5f1b9d97 85716 
libilmbase7_1.0.3+dfsg-3_amd64.deb
 ea384637d6973eba6395f44931f8ad34c3360a1c3cc3ae1813da50410193885e 144554 
libilmbase-dev_1.0.3+dfsg-3_amd64.deb
Files:
 da8fe3e0b2ccf3fe213440bce578cb4e 2088 libs optional ilmbase_1.0.3+dfsg-3.dsc
 d87eeb418d0f070a36276b7e92434370 9936 libs optional 
ilmbase_1.0.3+dfsg-3.debian.tar.xz
 45400f6c40d8eaf4b76dd96f33cee4bc 85716 libs optional 
libilmbase7_1.0.3+dfsg-3_amd64.deb
 d29a4c52461c767fdaa56630ecd8a904 144554 libdevel optional 
libilmbase-dev_1.0.3+dfsg-3_amd64.deb

-BEGIN PGP SIGNATURE-
Version: GnuPG v1


Bug#776628: ITP: needrestart-session -- check for processes need to be restarted in user sessions

2015-01-30 Thread Patrick Matthäi
Package: wnpp
Severity: wishlist
Owner: Patrick Matthäi pmatth...@debian.org

* Package name: needrestart-session
  Version : 0.3
  Upstream Author : Thomas Liske
* URL : https://github.com/liske/needrestart-session
* License : GPL-2+
  Programming Lang: Perl
  Description : check for processes need to be restarted in user sessions

 needrestart checks which processes need to be restarted after library upgrades.
 needrestart-session implements a notification of user sessions about their
 obsolete processes after system upgrades.


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Bug#698982: libdumbnet RC bug fix? + Fwd: libnet-{libdnet6,frame-device,libdnet}-perl are marked for autoremoval from testing [origin: nore...@release.debian.org]

2015-01-30 Thread Axel Beckert
Hi Peter,

I just noticed you have ITA'ed[0] libdumbnet back in June.

libdumbnet has currently an RC bug[1] which may cause a bunch of
packages, including three packages managed by the Debian Perl Group
(Cc'ed), to be autoremoved, too.

Do you intend to take care of that RC bug, too?

  [0] https://bugs.debian.org/698982
  [1] https://bugs.debian.org/775896

- Forwarded message from Debian testing autoremoval watch 
nore...@release.debian.org -
Date: Thu, 29 Jan 2015 04:39:07 +
From: Debian testing autoremoval watch nore...@release.debian.org
Subject: libnet-libdnet6-perl is marked for autoremoval from testing

libnet-libdnet6-perl 0.26-1 is marked for autoremoval from testing on 2015-03-06

It (build-)depends on packages with these RC bugs:
775896: libdumbnet-dev: copyright file missing after upgrade (policy 12.5)
- End forwarded message -

- Forwarded message from Debian testing autoremoval watch 
nore...@release.debian.org -
Date: Thu, 29 Jan 2015 04:39:07 +
From: Debian testing autoremoval watch nore...@release.debian.org
Subject: libnet-frame-device-perl is marked for autoremoval from testing

libnet-frame-device-perl 1.10-1 is marked for autoremoval from testing on 
2015-03-06

It (build-)depends on packages with these RC bugs:
775896: libdumbnet-dev: copyright file missing after upgrade (policy 12.5)
- End forwarded message -

- Forwarded message from Debian testing autoremoval watch 
nore...@release.debian.org -
Date: Thu, 29 Jan 2015 04:39:07 +
From: Debian testing autoremoval watch nore...@release.debian.org
Subject: libnet-libdnet-perl is marked for autoremoval from testing

libnet-libdnet-perl 0.98-1 is marked for autoremoval from testing on 2015-03-06

It (build-)depends on packages with these RC bugs:
775896: libdumbnet-dev: copyright file missing after upgrade (policy 12.5)
- End forwarded message -

Kind regards, Axel
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Processed: sflowtool: changing from RFP to ITP

2015-01-30 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 retitle 724738 ITP: sflowtool -- Command line utility for decoding and 
 analyzing sflow data
Bug #724738 [wnpp] RFP: sflowtool -- Command line utility for decoding and 
analyzing sflow data
Changed Bug title to 'ITP: sflowtool -- Command line utility for decoding and 
analyzing sflow data' from 'RFP: sflowtool -- Command line utility for decoding 
and analyzing sflow data'
 owner 724738 !
Bug #724738 [wnpp] ITP: sflowtool -- Command line utility for decoding and 
analyzing sflow data
Owner recorded as Rowan Thorpe ro...@rowanthorpe.com.
 thanks
Stopping processing here.

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Bug#724738: sflowtool: changing from RFP to ITP

2015-01-30 Thread Rowan Thorpe
retitle 724738 ITP: sflowtool -- Command line utility for decoding and 
analyzing sflow data
owner 724738 !
thanks

I made package this back at the time I opened the ITP, and uploaded to mentors,
and asked on DD mailinglist for mentoring. After more than a year though (and
bumping my packaging to follow three upstream version-bumps, adding
init-scripts for autostarting fanout processes as daemons, and more than 10 of
my patches making their way into upstream itself) it then got auto-deleted off
the mentors server. I still maintain the packaging for my own purposes now
(less frequently though), but I'll wait until a DD shows at least some interest
in helping to proceed before I re-upload it.

I suspect most were scared off by the present licensing, but I had been in
discussion with the upstream dev, and he was receptive to the idea of pitching
to the appropriate decision-makers about relicensing if it would get the
package into Debian. They already did that for another package of theirs when
they put it on Sourceforge - host-sflow. They triple-licensed it under a
choice of their own non-free Sflow License, the Adaptive Public License 1.0 and
the Sun Industry Standards Source License 1.1. As a side-point, I don't think
either of those two free licenses have been DFSG-approved though...

-- 
Rowan Thorpe
PGP fingerprint:
 BB0A 0787 C0EE BDD8 7F97  3D30 49F2 13A5 265D CCBD

There is a great difference between worry and concern. A worried person sees
a problem, and a concerned person solves a problem.
 - Harold Stephens


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