Bug#800412: ITP: transrate-tools -- command line tool used by transrate to process BAM files

Package: wnpp Owner: "Debian Med Team" Severity: wishlist X-Debbugs-CC: debian-...@lists.debian.org * Package name: transrate-tools Version : 1.0.0 Upstream Author : Richard Smith-Unna & Chris Boursnell * URL :

Bug#828196: ITP: r-cran-globals -- R package: Identify Global Objects in R Expressions

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-globals Version : 0.6.1 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/globals * License : LGPL-2.1+

Bug#828184: ITP: r-cran-r.cache -- R package: Fast and Light-Weight Caching of Objects and Results

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-r.cache Version : 0.12.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/R.cache * License : LGPL (>=

Bug#828176: ITP: cnvkit -- Copy number variant detection from targeted DNA sequencing

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cnvkit Version : 0.7.11 Upstream Author : Eric Talevich * URL : http://cnvkit.readthedocs.io/ * License : Apache-2.0 Programming

Bug#828189: ITP: r-bioc-dnacopy -- R package: DNA copy number data analysis

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-dnacopy Version : 1.46.0 Upstream Author : Venkatraman E. Seshan * URL :

Bug#828197: ITP: r-cran-future -- R package: A Future API for R

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-future Version : 1.0.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/future * License : LGPL-2.1+

Bug#828690: ITP: r-cran-pscbs -- R package: Analysis of Parent-Specific DNA Copy Numbers

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-pscbs Version : 0.61.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/PSCBS * License : GPL-2+

Bug#828194: ITP: r-cran-listenv -- R package: Environments Behaving (Almost) as Lists

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-cran-listenv Version : 0.6.0 Upstream Author : Henrik Bengtsson * URL : https://github.com/HenrikBengtsson/listenv * License : LGPL 2.1+

Bug#828796: ITP: r-bioc-geneplotter -- R package of functions for plotting genomic data

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-geneplotter Version : 1.50.0 Upstream Author : Bioconductor Package Maintainer * URL :

Bug#814000: ITP: cwltool -- Common workflow language reference implementation

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cwltool Version : 1.0.20160203221531 Upstream Author : Common Workflow Language working group * URL :

Bug#814050: ITP: varna -- Visualization Applet for RNA

Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: varna Version : 3-93 Upstream Author : Kevin Darty, Alain Denise and Yann Ponty * URL : http://varna.lri.fr/ * License : GPL-3

Bug#813827: ITP: python-rdflib-jsonld -- rdflib extension adding JSON-LD parser and serializer

Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: python-rdflib-jsonld Version : 0.3 Upstream Author : RDFLib Team * URL : https://github.com/RDFLib/rdflib-jsonld * License : BSD Programming Lang: Python

Bug#813839: ITP: python-schema-salad -- rdflib extension adding JSON-LD parser and serializer

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-schema-salad Version : 1.6.2016020448 Upstream Author : Common workflow language working group * URL :

Bug#817056: ITP: python-typing -- Type Hints for Python

See https://www.python.org/dev/peps/pep-0484/#suggested-syntax-for-python-2-7-and-straddling-code Pe 8 mar. 2016 06:24, "Brian May" <b...@debian.org> a scris: > "Michael R. Crusoe" <cru...@ucdavis.edu> writes: > > > This is a backport of the standard l

Bug#817056: ITP: python-typing -- Type Hints for Python

:38 PM, Scott Kitterman <deb...@kitterman.com> wrote: > On Monday, March 07, 2016 09:01:30 AM Michael R. Crusoe wrote: > > Package: wnpp > > Severity: wishlist > > Owner: Debian Med team <debian-...@lists.debian.org> > > > > * Package name:

Bug#817056: ITP: python-typing -- Type Hints for Python

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-typing Version : 3.5.0.1 Upstream Author : Guido van Rossum, Jukka Lehtosalo, Łukasz Langa * URL :

Bug#823512: ITP: mypy -- Optional static typing for Python

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: mypy Version : 0.3.1 Upstream Author : Jukka Lehtosalo * URL : http://www.mypy-lang.org/ * License : MIT Programming Lang: Python

Bug#828850: ITP: r-bioc-deseq2 -- R package for RNA-Seq Differential Expression Analysis

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-bioc-deseq2 Version : 1.12.3 Upstream Author : Michael Love * URL : https://bioconductor.org/packages/DESeq2 * License :

Bug#834590: ITP: python3-typed-ast -- AST with PEP 484 type comments support

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python3-typed-ast Version : 0.5.5 Upstream Author : David Fisher * URL : https://pypi.python.org/pypi/typed-ast * License : Python,

Bug#834592: ITP: hisat2 -- graph-based alignment of short nucleotide reads to many genomes

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: hisat2 Version : 2.0.4 Upstream Author : HISAT2 team * URL : https://ccb.jhu.edu/software/hisat2/index.shtml * License : GPL-3+

Bug#841047: ITP: r-hms-dbmi-spp -- GNU R package for processing ChIP-seq & other functional sequencing data

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: r-hms-dbmi-spp Version : 1.14 Upstream Author : peterK * URL : http://compbio.med.harvard.edu/Supplements/ChIP-seq/ * License

Bug#851358: ITP: python-pybedtools -- Python wrapper around BEDTools for bioinformatics work

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-pybedtools Version : 0.7.8 Upstream Author : Ryan Dale * URL : https://github.com/daler/pybedtools * License : GPL 2+

Bug#851488: ITP: python-gffutils -- Work with GFF and GTF files in a flexible database framework

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-gffutils Version : 0.8.7.1 Upstream Author : Ryan Dale * URL : http://daler.github.io/gffutils/ * License : MIT Programming

Bug#860746: ITP: easel -- a library of C functions for biological sequence analysis

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: easel Version : 0.43 Upstream Author : Sean R. Eddy * URL : https://github.com/EddyRivasLab/easel * License : BSD-3-clause Programming

Bug#890061: ITP: galaxy-lib -- Subset of Galaxy core code base designed to be used

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: galaxy-lib Version : 17.9.10 Upstream Author : Galaxy Project and Community * URL : https://github.com/galaxyproject/galaxy-lib * License

Bug#890752: ITP: ctdopts -- Gives your Python tools a CTD-compatible interface

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: ctdopts Version : 1.2 Upstream Author : Andras Szolek et al. * URL : https://github.com/WorkflowConversion/CTDopts * License : GPL-3+ Programming Lang:

Bug#890755: ITP: ctdconverter -- Convert CTD files into Galaxy tool and CWL CommandLineTool files

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: ctdconverter Version : 2.0 Upstream Author : WorkflowConversion * URL : https://github.com/WorkflowConversion/CTDConverter/ * License : GPL-3 / Apache-2.0

Bug#911076: ITP: libdeflate -- fast, whole-buffer DEFLATE-based compression and decompression

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: libdeflate Version : 1.0 Upstream Author : Eric Biggers * URL : https://github.com/ebiggers/libdeflate * License : MIT Programming Lang: C Description : fast, whole-buffer

Bug#919570: ITP: python-mypy-extensions -- Experimental type system extensions for mypy typechecker (Python 3)

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-mypy-extensions Version : 0.4.1 Upstream Author : Jukka Lehtosalo and contributors * URL : https://github.com/python/mypy_extensions/ * License : Expat Programming Lang: Python

Bug#919681: ITP: sourmash -- tools for comparing DNA sequences with MinHash sketches

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: sourmash Version : 2.0.0~a11 Upstream Author : C. Titus Brown , Luiz C. Irber, Jr * URL : http://sourmash.readthedocs.io/en/latest/ * License : BSD-3-Clause Programming Lang: Python,

Bug#915852: ITP: bagit -- Create and validate BagIt packages

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: bagit Version : 1.7.0 Upstream Author : Ed Summers * URL : https://libraryofcongress.github.io/bagit-python/ * License : CC0 Programming Lang: Python Description : Create and

Bug#915829: ITP: arcp -- (Archive and Package) URI parser and generator

Package: wnpp Severity: wishlist Subject: ITP: arcp -- (Archive and Package) URI parser and generator Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: arcp Version : 0.2.0 Upstream Author : Stian Soiland-Reyes * URL :

Bug#914928: ITP: python-typing-extensions -- Backported and Experimental Type Hints for Python

Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: python-typing-extensions Version : 3.6.6 Upstream Author : Guido van Rossum, Jukka Lehtosalo, Lukasz Langa, Michael Lee * URL :

Bug#924246: 12

Package: wnpp Severity: normal test

Bug#932003: ITP: mypyc -- Mypy to Python C Extension Compile

Package: wnpp Severity: wishlist Subject: ITP: mypyc -- Mypy to Python C Extension Compile Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: mypyc Version : 0.0.git.20190713T1002.833151a+ds1 Upstream Author : Copyright: © 2017-2018 Jukka Lehtosalo

Bug#934629: ITP: seqan3 -- C++ library for the analysis of biological sequences (development)

Package: wnpp Severity: wishlist Subject: ITP: seqan3 -- C++ library for the analysis of biological sequences (development) Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: seqan3 Version : 3.0.0+ds Upstream Author : , Knut Reinert, FU Berlin * URL

Bug#939537: ITP: vg -- tools for working with genome variation graphs

Package: wnpp Severity: wishlist Subject: ITP: vg -- tools for working with genome variation graphs Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: vg Version : 1.18.0+ds Upstream Author : Copyright: © 2014 Erik Garrison * URL : https

Bug#940180: ITP: libbio-searchio-hmmer-perl -- perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)

Package: wnpp Severity: wishlist Subject: ITP: libbio-searchio-hmmer-perl -- perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam) Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-searchio-hmmer-perl Version : 1.7.3 Upstream

Bug#939933: ITP: megadock -- ultra-high-performance protein-protein docking for heterogeneous supercomputers

Package: wnpp Severity: wishlist Subject: ITP: megadock -- ultra-high-performance protein-protein docking for heterogeneous supercomputers Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: megadock Version : 4.1.1 Upstream Author : Copyright: © 2014-2018

Bug#940252: ITP: libbio-db-gff-perl -- Storage and retrieval of sequence annotation data

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-gff-perl -- Storage and retrieval of sequence annotation data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-gff-perl Version : 1.7.3 Upstream Author : Copyright: (c) 2001-2003, 2005

Bug#940254: ITP: libbio-db-embl-perl -- Database object interface for EMBL entry retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-embl-perl -- Database object interface for EMBL entry retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-embl-perl Version : 1.7.4 Upstream Author : Copyright: Heikki Lehvaslaiho

Bug#940257: ITP: libbio-tools-run-remoteblast-perl -- Object for remote execution of the NCBI Blast via HTTP

Package: wnpp Severity: wishlist Subject: ITP: libbio-tools-run-remoteblast-perl -- Object for remote execution of the NCBI Blast via HTTP Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-tools-run-remoteblast-perl Version : 1.7.3 Upstream Author

Bug#940258: ITP: libbio-db-ncbihelper-perl -- collection of routines useful for queries to NCBI databases.

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-ncbihelper-perl -- collection of routines useful for queries to NCBI databases. Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-ncbihelper-perl Version : 1.7.4 Upstream Author

Bug#940248: ITP: libbio-db-biofetch-perl -- Database object interface to BioFetch retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-biofetch-perl -- Database object interface to BioFetch retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-biofetch-perl Version : 1.7.3 Upstream Author : Copyright: Lincoln Stein

Bug#940256: ITP: libbio-cluster-perl -- BioPerl cluster modules

Package: wnpp Severity: wishlist Subject: ITP: libbio-cluster-perl -- BioPerl cluster modules Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-cluster-perl Version : 1.7.3 Upstream Author : Copyright: Allen Day , Andrew Macgregor , David Green

Bug#940253: ITP: libbio-db-ace-perl -- Database object interface to ACeDB servers

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-ace-perl -- Database object interface to ACeDB servers Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-ace-perl Version : 1.7.3 Upstream Author : Copyright: Ewan Birney , Lincoln Stein

Bug#940255: ITP: libbio-db-seqfeature-perl -- Normalized feature for use with Bio::DB::SeqFeature::Store

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-seqfeature-perl -- Normalized feature for use with Bio::DB::SeqFeature::Store Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-seqfeature-perl Version : 1.7.3 Upstream Author : Copyright

Bug#940244: ITP: libbio-alignio-stockholm-perl -- stockholm sequence input/output stream

Package: wnpp Severity: wishlist Subject: ITP: libbio-alignio-stockholm-perl -- stockholm sequence input/output stream Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-alignio-stockholm-perl Version : 1.7.3 Upstream Author : Copyright: Peter

Bug#944785: ITP: pufferfish -- An efficient index for the colored, compacted, de Bruijn graph

Package: wnpp Severity: wishlist Subject: ITP: pufferfish -- An efficient index for the colored, compacted, de Bruijn graph Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: pufferfish Version : 1.0.0 Upstream Author : , 2016 Rob Patro, Avi Srivastava

Bug#946468: ITP: libbio-variation-perl -- BioPerl variation-related functionality

Package: wnpp Severity: wishlist Subject: ITP: libbio-variation-perl -- BioPerl variation-related functionality Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-variation-perl Version : 1.7.4 Upstream Author : Copyright: Allen Day , Heikki

Bug#946638: ITP: hopscotch-map -- C++ fast hash map and hash set using hopscotch hashing

Package: wnpp Severity: wishlist Subject: ITP: hopscotch-map -- C++ fast hash map and hash set using hopscotch hashing Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: hopscotch-map Version : 2.2.1 Upstream Author : Tessil * URL : https

Bug#946611: ITP: golang-github-abeconnelly-autoio -- Golang io functions that provide standard scanner interfaces for compressed files.

Package: wnpp Severity: wishlist Package: wnpp Severity: wishlist Owner: Michael R. Crusoe * Package name: golang-github-abeconnelly-autoio Version : 0.0~git20150803.989b7b0-1 Upstream Author : Abram Connelly * URL : https://github.com/abeconnelly/autoio * License

Bug#946266: ITP: libbio-db-swissprot-perl -- Database object interface to SwissProt retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-swissprot-perl -- Database object interface to SwissProt retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-swissprot-perl Version : 1.7.3 Upstream Author : Copyright: Jason

Bug#946269: ITP: libbio-db-refseq-perl -- Database object interface for RefSeq retrieval

Package: wnpp Severity: wishlist Subject: ITP: libbio-db-refseq-perl -- Database object interface for RefSeq retrieval Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-db-refseq-perl Version : 1.7.3 Upstream Author : Copyright: Heikki Lehvaslaiho

Bug#946272: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl

Package: wnpp Severity: wishlist Subject: ITP: libbio-procedural-perl -- Simple low-dependency procedural interfaces to BioPerl Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-procedural-perl Version : 1.7.4 Upstream Author : Copyright: Ewan

Bug#946299: ITP: simde -- Implementations of SIMD instructions for all systems

Package: wnpp Severity: wishlist Subject: ITP: simde -- Implementations of SIMD instructions for all systems Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: simde Version : 0.0.0.git.20191205.c2e740c Upstream Author : , Evan Nemerson * URL

Bug#950992: ITP: routine-update -- routine updater for a Debian source package

Package: wnpp Severity: wishlist Subject: ITP: routine-update -- routine updater for a Debian source package Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: routine-update Version : 0.0.1 Upstream Author : Andreas Tille * URL : https

Bug#950607: ITP: bwa-mem2 -- the next version of the bwa-mem algorithm in bwa

Package: wnpp Severity: wishlist Subject: ITP: bwa-mem2 -- the next version of the bwa-mem algorithm in bwa Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: bwa-mem2 Version : 2.0~pre2 Upstream Author : , Vasimuddin Md, Sanchit Misra, Intel Corporation

Bug#951510: ITP: r-cran-network -- Classes for Relational Data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-network -- Classes for Relational Data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-network Version : 1.16.0 Upstream Author : Carter T. Butts, * URL : https://cran.r

Bug#951511: ITP: r-cran-statnet.common -- Common R Scripts and Utilities Used by the Statnet Project

Package: wnpp Severity: wishlist Subject: ITP: r-cran-statnet.common -- Common R Scripts and Utilities Used by the Statnet Project Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-statnet.common Version : 4.3.0 Upstream Author : Pavel N

Bug#951512: ITP: r-cran-sna -- Tools for Social Network Analysis

Package: wnpp Severity: wishlist Subject: ITP: r-cran-sna -- Tools for Social Network Analysis Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-sna Version : 2.5 Upstream Author : Carter T. Butts * URL : https://cran.r-project.org

Bug#951425: ITP: gerp++ -- identifies constrained elements in multiple alignments

Package: wnpp Severity: wishlist Subject: ITP: gerp++ -- identifies constrained elements in multiple alignments Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: gerp++ Version : 2.1 Upstream Author : , George Asimenos * URL : http

Bug#951483: ITP: ataqv -- ATAC-seq QC and visualization

Package: wnpp Severity: wishlist Subject: ITP: ataqv -- ATAC-seq QC and visualization Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: ataqv Version : 1.1.1+ds Upstream Author : Stephen Parker * URL : https://github.com/ParkerLab/ataqv

Bug#951361: ITP: libfile-sort-perl -- module to sort a file or merge sort multiple files

Package: wnpp Severity: wishlist Subject: ITP: libfile-sort-perl -- module to sort a file or merge sort multiple files Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libfile-sort-perl Version : 1.01 Upstream Author : , Chris Nandor , http://pudge.net

Bug#951072: ITP: htscodecs -- Custom compression for CRAM and others

Package: wnpp Severity: wishlist Subject: ITP: htscodecs -- Custom compression for CRAM and others Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: htscodecs Version : 0.5 Upstream Author : , Genome Research Ltd. * URL : https://github.com

Bug#948329: ITP: libsys-info-driver-linux-perl -- Linux driver for Sys::Info

Package: wnpp Severity: wishlist Subject: ITP: libsys-info-driver-linux-perl -- Linux driver for Sys::Info Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libsys-info-driver-linux-perl Version : 0.7905 Upstream Author : , Burak Gursoy * URL

Bug#948325: ITP: libbio-featureio-perl -- Modules for reading, writing, and manipulating sequence features

Package: wnpp Severity: wishlist Subject: ITP: libbio-featureio-perl -- Modules for reading, writing, and manipulating sequence features Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-featureio-perl Version : 1.6.905 Upstream Author : BioPerl

Bug#948330: ITP: libsys-info-perl -- Fetch information from the host system

Package: wnpp Severity: wishlist Subject: ITP: libsys-info-perl -- Fetch information from the host system Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libsys-info-perl Version : 0.7811 Upstream Author : , Burak Gursoy * URL : https

Bug#956228: ITP: libbio-tradis-perl -- set of tools to analyse the output from TraDIS analyses.

Package: wnpp Severity: wishlist Subject: ITP: libbio-tradis-perl -- set of tools to analyse the output from TraDIS analyses. Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbio-tradis-perl Version : 1.4.5 Upstream Author : , Carla Cummins * URL

Bug#955282: ITP: ruamel.yaml.clib -- C version of reader, parser and emitter for ruamel.yaml

Package: wnpp Severity: wishlist Subject: ITP: ruamel.yaml.clib -- C version of reader, parser and emitter for ruamel.yaml Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: ruamel.yaml.clib Version : 0.2.0 Upstream Author : , Anthon van der Neut, Ruamel

Bug#958962: ITP: r-cran-goplot -- Visualization of Functional Analysis Data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-goplot -- Visualization of Functional Analysis Data Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-goplot Version : 1.0.2 Upstream Author : Wencke Walter, * URL : https://cran.r

Bug#958967: ITP: r-bioc-dexseq -- Inference of differential exon usage in RNA-Seq

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-dexseq -- Inference of differential exon usage in RNA-Seq Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-dexseq Version : 1.32.0 Upstream Author : Simon Anders and Alejandro Reyes * URL

Bug#959237: ITP: odgi -- optimized dynamic genome/graph implementation

Package: wnpp Severity: wishlist Subject: ITP: odgi -- optimized dynamic genome/graph implementation Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: odgi Version : 0.4.1 Upstream Author : , Erik Garrison * URL : https://github.com/vgteam

Bug#958936: ITP: r-cran-argparse -- Command Line Optional and Positional Argument Parser

Package: wnpp Severity: wishlist Subject: ITP: r-cran-argparse -- Command Line Optional and Positional Argument Parser Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-argparse Version : 2.0.1 Upstream Author : Trevor L Davis * URL

Bug#958952: ITP: r-cran-findpython -- Functions to Find an Acceptable Python Binary

Package: wnpp Severity: wishlist Subject: ITP: r-cran-findpython -- Functions to Find an Acceptable Python Binary Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-findpython Version : 1.0.5 Upstream Author : Trevor L Davis, * URL

Bug#960112: ITP: rust-elfx86exts -- Print instruction sets used by x86 binaries (ELF or MachO)

Package: wnpp Severity: wishlist Subject: ITP: rust-elfx86exts -- Print instruction sets used by x86 binaries (ELF or MachO) Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: rust-elfx86exts Version : 0.3.0 Upstream Author : Peter Williams * URL

Bug#962341: Acknowledgement (ITP: ruamel.yaml.clib -- C based reader/scanner and emitter for ruamel.yaml)

My initial package is at https://salsa.debian.org/crusoe/ruamel.yaml.clib Drew, if you would like to take over then I am happy to give it to you. Thank you for also caring about ruamel.yaml! -- Michael R. Crusoe

Bug#962341: Acknowledgement (ITP: ruamel.yaml.clib -- C based reader/scanner and emitter for ruamel.yaml)

On Sun, Jun 7, 2020 at 10:35 AM Drew Parsons wrote: > On 2020-06-07 15:59, Michael R. Crusoe wrote: > > My initial package is at > > https://salsa.debian.org/crusoe/ruamel.yaml.clib > > > > Drew, if you would like to take over then I am happy to give it to > >

Bug#975629: ITP: r-cran-bench -- High Precision Timing of R Expressions

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-cran-bench -- High Precision Timing of R Expressions Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-bench Version : 1.1.1 Upstream Author : Jim

Bug#975625: ITP: r-cran-profmem -- Simple Memory Profiling for R

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-cran-profmem -- Simple Memory Profiling for R Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-profmem Version : 0.5.0 Upstream Author : Henrik

Bug#974999: ITP: r-bioc-glmgampoi -- GNU R fit a Gamma-Poisson generalized linear model

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-bioc-glmgampoi -- GNU R fit a Gamma-Poisson generalized linear model Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-glmgampoi Version : 1.2.0

Bug#975439: ITP: r-bioc-bluster -- Clustering Algorithms for Bioconductor

Package: wnpp Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Subject: ITP: r-bioc-bluster -- Clustering Algorithms for Bioconductor Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-bluster Version : 1.0.0 Upstream Author

Bug#981116: ITP: python-wdlparse -- Workflow Description Language (WDL) parser for Python

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-wdlparse -- Workflow Description Language (WDL) parser for Python Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-wdlparse Version : 0.1.0 Upstream Author

Bug#982417: Python louvain packages naming confusion.

cally run autodep8 which > fails because the import name is community and not louvain. > In the short term I recommend fixing this by adding a file to the Debian python-louvain package named "debian/tests/autopkgtest-pkg-python.conf" with the contents "import_name = community" -- Michael R. Crusoe

Bug#986236: ITP: r-cran-visnetwork -- Network Visualization using 'vis.js' Library

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-cran-visnetwork -- Network Visualization using 'vis.js' Library Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-visnetwork Version : 2.0.9+ds Upstream Author

Bug#986237: ITP: r-cran-influencer -- Software Tools to Quantify Structural Importance of Nodes in a

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-cran-influencer -- Software Tools to Quantify Structural Importance of Nodes in a Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-influencer Version : 0.1.0

Bug#986241: ITP: r-cran-diagrammer -- Graph/Network Visualization

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-cran-diagrammer -- Graph/Network Visualization Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-cran-diagrammer Version : 1.0.6.1+ds Upstream Author : Richard Iannone

Bug#984815: ITP: libbiosoup-dev -- C++ header-only support library for bioinformatics tools

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: libbiosoup-dev -- C++ header-only support library for bioinformatics tools Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: libbiosoup-dev Version : 0.10.0 Upstream Author

Bug#986621: ITP: r-bioc-rcwl -- An R interface to the Common Workflow Language

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-bioc-rcwl -- An R interface to the Common Workflow Language Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-rcwl Version : 1.6.0+ds Upstream Author : Qiang Hu, * URL

Bug#981866: ITP: python-stubserver -- mock tester of external web dependencies for Python

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-stubserver -- mock tester of external web dependencies for Python Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-stubserver Version : 1.1 Upstream Author

Bug#982082: ITP: r-bioc-scrnaseq -- Collection of Public Single-Cell RNA-Seq Datasets

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: r-bioc-scrnaseq -- Collection of Public Single-Cell RNA-Seq Datasets Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: r-bioc-scrnaseq Version : 2.4.0+ds Upstream Author

Bug#982142: ITP: uncalled -- Utility for Nanopore Current Alignment to Large Expanses of DNA

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: uncalled -- Utility for Nanopore Current Alignment to Large Expanses of DNA Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: uncalled Version : 2.2+ds Upstream Author : , Sam

Bug#994403: ITP: python-types-toml -- Typing stubs for toml

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-toml -- Typing stubs for toml Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-toml Version : 0.1.5 Upstream Author : * URL : https

Bug#994404: ITP: python-types-typed-ast -- Typing stubs for typed-ast

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-typed-ast -- Typing stubs for typed-ast Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-typed-ast Version : 1.4.4 Upstream Author : * URL

Bug#994599: ITP: python-tomli -- lil' TOML parser for Python

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-tomli -- lil' TOML parser for Python Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-tomli Version : 1.2.1 Upstream Author : Taneli Hukkinen * URL

Bug#994830: ITP: python-types-dataclasses -- Typing stubs for dataclasses

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-types-dataclasses -- Typing stubs for dataclasses Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: python-types-dataclasses Version : 0.1.7 Upstream Author : Gary van

Bug#1003961: ITP: cwl-upgrader -- Common Workflow Language standalone document upgrader

This package will be maintained in the collaborative Debian section of Salsa. Dear Jonas, Thank you for your ITP! I'm the upstream maintainer; also of cwltool, toil, python-schema-salad. Feel free to add me as a co-maintainer. If you are open to team maintenance, may I suggest Debian Science

Bug#1051798: ITP: python-pcre2 -- Python bindings for the PCRE2 regular expression library

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: python-pcre2 -- Python bindings for the PCRE2 regular expression library Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name : python-pcre2 Version : 0.2.0+ds Upstream Author : grtetrault

Bug#1018887: ITP: cwl-utils -- Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: cwl-utils -- Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2 Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: cwl-utils Version : 0.16 Upstream Author

Bug#1022044: ITP: pytest-httpserver -- HTTP server for pytest to test HTTP clients

Package: wnpp Severity: wishlist X-Debbugs-Cc: cru...@debian.org Subject: ITP: pytest-httpserver -- HTTP server for pytest to test HTTP clients Package: wnpp Owner: Michael R. Crusoe Severity: wishlist * Package name: pytest-httpserver Version : 1.0.6 Upstream Author : Zsolt

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