Bug#674265: ITP: biojava3 -- Java API to develop tools for bioinformatics research rewrote from biojava1

2012-05-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: biojava3 Version : 3.0.4 Upstream Author : BioJava team * URL : http://www.biojava.org/ * License : LGPL Programming Lang: Java Description : Java API to develop tools for

Bug#674269: ITP: libforester-java -- library for phylogenomics and evolutionary biology research

2012-05-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: forester Version : 0.955 * URL : http://code.google.com/p/forester/ * License : LGPL Programming Lang: Java Description : library for phylogenomics and evolutionary biology research

Bug#678373: ITP: logol -- Pattern matching tool for biological sequences

2012-06-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: logol Version : 1.5.0 Upstream Author : Olivier Sallou * URL : http://logol.genouest.org * License : CeCILL Programming Lang: Java, Prolog Description : Pattern matching tool for

Bug#674269: waiting for source versioning

2012-06-27 Thread Olivier Sallou
I have sent an email to upstream author to get a versioning between binaries and sources. Sources are not delivered, only in SVN, and not tagged. We can watch new version via download page on binaries but we cannot match a binary with a source SVN commit or tag. -- gpg key id: 4096R/326D8438

Bug#683291: ITP: soapdenovo -- short-read assembly method that can build a de novo draft assembly for the human-sized genomes

2012-07-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: soapdenovo Version : 1.0.5 Upstream Author : BGI-Shenzhen * URL : http://soap.genomics.org.cn/soapdenovo.html * License : GPL3+ Programming Lang: C Description : short-read assembly

Bug#686077: ITP: libsnappy1.0.3-java -- Fast Java compressor/decompressor, port of Snappy

2012-08-28 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libsnappy1.0.3-java Version : 1.0.3-rc3 Upstream Author : Xerial.org * URL : https://code.google.com/p/snappy-java/downloads/list?can=4&q=&colspec=Filename+Summary+Uploaded+ReleaseD

Bug#657184: ITP: j2f -- Java Application Programming Interfaces (APIs) to numerical libraries originally written in Fortran

2012-01-24 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: j2f Version : 0.8.1 Upstream Author : Keith Seymour (seym...@cs.utk.edu) * URL : http://sourceforge.net/projects/f2j/ * License : GPL Programming Lang: C Description : Java

Bug#665341: ITP: libjlapack-java -- LAPACK numerical subroutines translated from Fortran to Java

2012-03-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libjlapack-java Version : 0.8 Upstream Author : Keith Seymour * URL : http://icl.cs.utk.edu/f2j/ * License : BSD Programming Lang: Fortran, Java Description : LAPACK numerical

Bug#665343: ITP: libnetlib-java -- collection of mission-critical software components for linear algebra system translated from Fortran to Java

2012-03-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libnetlib-java Version : 0.9.3 Upstream Author : Sam Halliday * URL : http://code.google.com/p/netlib-java * License : BSD Programming Lang: Fortran, Java Description : collection

Bug#665341: License issue in JLapack

2012-03-23 Thread olivier sallou
Arrggh!! The file src/util/org/j_paine/formatter/CJFormat.java presents a non compatible license: /*^M * Gary Cornell and Cay S. Horstmann, Core Java (Book/CD-ROM)^M * Published By SunSoft Press/Prentice-Hall^M * Copyright (C) 1996 Sun Microsystems Inc.^M * All Rights Reserved. ISBN 0-13-56575

Bug#665341: Licensing of an old Java code

2012-03-23 Thread Olivier Sallou
se for any purpose ? Regarding the nature of this particular code, I don't think this would an issue for you. If you agree to do so, can you please answer this email with a "format" agreement as well as the selected licence. Regards Olivier Sallou -- gpg key id: 4096R/326D8438

Bug#665341: Fwd: Licensing of an old Java code

2012-03-26 Thread olivier sallou
Upstream author licensed impacted file under GLP v3, leveraging issue. -- Forwarded message -- From: Cay Horstmann Date: 2012/3/24 Subject: Re: Licensing of an old Java code To: olivier sallou I attach the latest version that I have, with a GPL v3 header. If the project uses

Bug#644137: ITP: ruby-cassiopee -- provide methods to search exact match or approximate matches with Hamming or edit distance

2011-10-03 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: ruby-cassiopee Version : 0.1.8 Upstream Author : Olivier Sallou * URL : https://rubygems.org/gems/cassiopee * License : GPL Programming Lang: Ruby Description : provide methods to

Bug#644136: ITP: ruby-text -- collection of text match and analysis algorithms

2011-10-03 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: ruby-text Version : 1.1.2 Upstream Author : Paul Battley, Michael Neumann, Tim Fletcher * URL : https://rubygems.org/gems/Text * License : GPL Programming Lang: Ruby Description

Bug#644882: package name

2011-10-10 Thread olivier sallou
Hi, maybe package name should be libtorque-drmaa. Debian contains torque-xxx packages for Torque stuff, and as drmaa is a library I think it should be name according to this scheme. drmaa lib for sge is libdrmaa(-xxx for java etc...), so it would also be coherent. Regards, Olivier -- gpg key

Bug#647416: ITP: libbio-chado-schema-perl -- object-relational mapping layer for use with the GMOD Chado database schema

2011-11-02 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libbio-chado-schema-perl Version : 0.09010 Upstream Author : Robert Bruels * URL : http://search.cpan.org/~rbuels/Bio-Chado-Schema/lib/Bio/Chado/Schema.pm * License : Artistic or GPL-1

Bug#647417: ITP: libdbix-class-tree-nestedset-perl -- Manage trees of data using the nested set model

2011-11-02 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libdbix-class-tree-nestedset-perl Version : 0.10 Upstream Author : Ian Docherty * URL : http://search.cpan.org/~icydee/DBIx-Class-Tree-NestedSet-0.10/ * License : Artistic or GPL-1

Bug#652031: ITP: clustalo -- Clustal Omega is the latest addition to the Clustal family

2011-12-14 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: clustalo Version : 1.0.3 Upstream Author : clust...@ucd.ie * URL : http://www.clustal.org/omega/ * License : GPL Programming Lang: C Description : Clustal Omega is the latest

Bug#652031: Add more descriptive info on what is clustalo package

2011-12-15 Thread Olivier Sallou
Clustal-Omega is a general purpose multiple sequence alignment (MSA) program for proteins. It produces high quality MSAs and is capable of handling data-sets of hundreds of thousands of sequences in reasonable time. In default mode, users give a file of sequences to be aligned and these are cluste

Bug#654603: ITP: gassst -- Global Alignment Short Sequence Search Tool

2012-01-04 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: gassst Version : 1.28 Upstream Author : Dominique Lavanier * URL : http://www.irisa.fr/symbiose/projects/gassst/ * License : CeCILL v2 Programming Lang: C++ Description : Global

Bug#429610: gbrowse2 licensing issue fixed

2011-04-01 Thread Olivier Sallou
I could have a look for dropdown css. License is GNU GPL. It comes from http://lwis.net/free-css-drop-down-menu/ For readseq.c, I decided to remove contrib directory from source, while other contribs are not clear from license point of view. Contribs are not required for software usage. -- gpg

Bug#624394: ITP:ncbi-blast-plus

2011-04-27 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou Package name: ncbi-blast-plus Version : 2.2.25 URL : http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download License : public domain Programming Lang: C++ Des

Bug#609038: ITP: biomaj -- a biological databank update and processing tool

2011-01-06 Thread Olivier Sallou
for working on this package Andreas. On Wed, Jan 05, 2011 at 06:14:27PM +0100, Olivier Sallou wrote: Package: biomaj Version: 1.1.0 Severity: wishlist I want to package the Biomaj tool (http://biomaj.genouest.org) for Debian. The tool is already on production on several servers worldwide

Bug#609038: BioMAJ additional information

2011-01-06 Thread Olivier Sallou
Package name: biomaj Version : 1.1.0 Upstream Author : Olivier Sallou Programming Lang: Java License: CeCILL, french equivalent of GNU GPL Description: Biological banks updater BioMAJ downloads remote biological data banks, check their status and apply

Bug#670353: Some (minimal?) Java help needed (Was: Bug#670353: ITP: fastqc -- quality control for next generation sequencing data)

2012-11-07 Thread Olivier Sallou
ist >> Owner: Steffen Moeller >> >> * Package name: fastqc >> * URL : http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ >> * License : GPL-3 >> Programming Lang: Java >> Description : quality control for next gene

Bug#670353: Some (minimal?) Java help needed (Was: Bug#670353: ITP: fastqc -- quality control for next generation sequencing data)

2012-11-08 Thread Olivier Sallou
Le 11/8/12 8:40 AM, Olivier Sallou a écrit : > Le 11/7/12 3:29 PM, Andreas Tille a écrit : >> Hi, >> >> I stumbled upon this one and did some work on it in >> >>Vcs-Svn: >> http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/ >>

Bug#670353: Some (minimal?) Java help needed (Was: Bug#670353: ITP: fastqc -- quality control for next generation sequencing data)

2012-11-08 Thread Olivier Sallou
Le 11/8/12 8:40 AM, Olivier Sallou a écrit : > Le 11/7/12 3:29 PM, Andreas Tille a écrit : >> Hi, >> >> I stumbled upon this one and did some work on it in >> >>Vcs-Svn: >> http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/ >>

Bug#693094: RFH: cloud-init -- configuration and customization of cloud instances

2012-11-12 Thread olivier sallou
2012/11/13 Charles Plessy > Package: wnpp > Severity: normal > > I request assistance with maintaining the cloud-init package. > > The package description is: > System to handle early initialization of a cloud instance. Cloud-init can > for > example set a default locale and a host name, genera

Bug#700859: ITP: mobyle-tutorials -- Tutorial descriptors for the mobyle package

2013-02-18 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: mobyle-tutorials Version : 1.5.0 Upstream Author : Mobyle team * URL : ftp://ftp.pasteur.fr/pub/GenSoft/projects/mobyle/ * License : LGPL-2+ Programming Lang: XML Description

Bug#632086: ITP:libmath-vecstat-perl --Some basic numeric stats on vectors

2011-06-29 Thread Olivier Sallou
Package: wnpp Severity: wishlist X-Debbugs-CC:debian-...@lists.debian.org Language: Perl Homepage: http://search.cpan.org/dist/Math-VecStat/ Description: This package offers some basic statistics on vectors (min,max,average,) Dependencies: None Upstream author: Andrea Spinelli -- Olivier

Bug#632174: ITP:circos -- software package for visualizing data and information in a circular layout

2011-06-30 Thread Olivier Sallou
<http://circos.ca/intro/circular_approach> --- this makes Circos ideal for exploring relationships between objects or positions Upstream author: Martin Krzywinski -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 40

Bug#632174: add license info

2011-06-30 Thread Olivier Sallou
License: GPL2+ -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-wnpp-requ

Bug#632174: Fwd: font "pointers" license

2011-08-02 Thread Olivier Sallou
I tried to clarify license on "pointers" fonts embedded in upstream software. Author is ok to allow modifications on sources. - Mail transféré - > De: "Russ Rowlett" > À: "Olivier Sallou" > Envoyé: Lundi 1 Août 2011 23:04:46 > Objet: RE: font

Bug#632174: Fwd: RE: font "pointers" license

2011-08-02 Thread Olivier Sallou
Message original Sujet: RE: font "pointers" license Date : Tue, 2 Aug 2011 12:36:41 + De :Rowlett, Russ Pour : Olivier Sallou Yes, that would be OK. Russ ____ From: Olivier Sallou [olivier.sal...@irisa.fr] Sen

Bug#637109: ITP: pycaptcha -- collection of Python modules implementing CAPTCHAs

2011-08-08 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: pycaptcha Version : 2.4 Upstream Author : Micah Dowty * URL : http://pypi.python.org/pypi/PyCAPTCHA/0.4 * License : MIT Programming Lang: Python Description : collection of

Bug#637230: ITP: mobyle -- Mobyle is a wbe portal and framework to provide web interfaces to command-line tools. It is designed though not limited for bioinfomatics.

2011-08-09 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: mobyle Version : 1.0.0 Upstream Author : Herve Menager * URL : https://projets.pasteur.fr/wiki/mobyle/download * License : GPL Programming Lang: Python Description : Mobyle is a

Bug#632174: set owner to myself

2011-08-10 Thread Olivier Sallou
Owner: olivier.sal...@irisa.fr -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Arc

Bug#632174: set owner

2011-08-11 Thread Olivier Sallou
owner: olivier.sal...@irisa.fr -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Bug#639868: ITP: chado -- Chado is a relational database schema that underlies many GMOD installations.

2011-08-31 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: chado Version : 1.11 Upstream Author : GMOD * URL : http://gmod.org/wiki/Chado_-_Getting_Started * License : Artistic License 2.0 Programming Lang: Perl,SQL Description : Chado is

Bug#732990: ITP: readseq2 -- readseq2 is a rewrite of readseq converter

2013-12-23 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: readseq2 Version : 2.1.30 Upstream Author : D. Gilbert * URL : http://iubio.bio.indiana.edu/soft/molbio/readseq/java/ * License : Public Domain Programming Lang: Java Description

Bug#776704: ITP: biojava4-live -- Java API to biological data and applications

2015-01-31 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: biojava4-live Version : 4.0.0 Upstream Author : biojava team * URL : *http://biojava.org/wiki/Main_Page <http://biojava.org/wiki/Main_Page>* * License : LGPL-2. Programming Lang

Bug#776722: ITP: macsyfinder -- Macromolecular system detection

2015-01-31 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Bertrand Neron * Package name: macsyfinder Version : 1.0.2 Upstream Author : Abby SS, Néron B, Ménager H, Touchon M, Rocha * URL : https://github.com/gem-pasteur/macsyfinder * License : GPL-3. Programming Lang: Python

Bug#795822: ITP: python-cutadapt -- cleaner for biological high sequencing data reads

2015-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-Debbugs-Cc: debian-...@lists.debian.org * Package name: python-cutadapt Version : 1.8.3 Upstream Author : Marcel Martin * URL : http://pypi.python.org/pypi/cutadapt * License : MIT Programming Lang

Bug#795865: ITP: bio-rainbow -- RAD-seq related clustering and de novo assembly

2015-08-17 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: bio-rainbow Version : 2.4.0 Upstream Author : Jue Ruan * URL : http://sourceforge.net/projects/bio-rainbow/ * License : GPL Programming Lang: C, Perl Description : RAD-seq related

Bug#796289: ITP: python-eta -- python module to generate progress bar for CLI

2015-08-20 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: python-eta Version : 0.9.7 Upstream Author : Marcus Breese * URL : https://github.com/mbreese/eta * License : BSD Programming Lang: Python Description : python module to generate

Bug#796363: ITP: libsis-base-java -- supplies some utility classes needed for libraries like sis-jhdf5

2015-08-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libsis-base-java Version : 14.12.0 Upstream Author : ETH Zuerich, CISD * URL : https://wiki-bsse.ethz.ch/display/JHDF5/Download+Page * License : Apache Programming Lang: C, Java

Bug#796390: ITP: libsis-jhdf5-java -- HDF library for Java

2015-08-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libsis-jhdf5-java Version : 14.12.1 Upstream Author : ETH Zuerich CISD * URL : http://svncisd.ethz.ch/repos/cisd/jhdf5/tags/release/ * License : Apache Programming Lang: C, Java

Bug#796487: ITP: repeatmasker-recon -- indentification of repeat families from biological sequences

2015-08-21 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: repeatmasker-recon Version : 1.08 Upstream Author : Institute for Systems Biology * URL : http://www.repeatmasker.org/ * License : GPL Programming Lang: C, Perl Description

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

2015-04-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: python-obitools Version : 1.1.16 Upstream Author : Eric Coissac * URL : http://metabarcoding.org//obitools/ * License : CeCILL-V2 Programming Lang: Python Description : set of

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

2015-04-30 Thread olivier sallou
Le jeu. 30 avr. 2015 à 17:42, Scott Kitterman a écrit : > On Thursday, April 30, 2015 05:13:03 PM Olivier Sallou wrote: > > Package: wnpp > > Severity: wishlist > > Owner: Olivier Sallou > > > > * Package name: python-obitools > > Version

Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

2015-04-30 Thread olivier sallou
Le jeu. 30 avr. 2015 à 23:57, Ben Hutchings a écrit : > On Thu, 2015-04-30 at 16:23 +0000, olivier sallou wrote: > [...] > > > Nope, not yet. However, as I discussed with one guy of the team some > > time ago, I do not think there is any plan to go to python3. > > Th

Bug#783833: Fwd: Bug#783833: ITP: python-obitools -- set of programs specifically designed for analyzing NGS data in a DNA metabarcoding contex

2015-05-01 Thread olivier sallou
Le ven. 1 mai 2015 10:03, Andreas Tille a écrit : Hi Olivier, On Thu, Apr 30, 2015 at 03:16:51PM +, olivier sallou wrote: > The OBITools package is a set of programs specifically designed for > analyzing NGS data in a DNA metabarcoding context, taking into account > taxonomic in

Bug#429610: GBrowse2 packaging

2011-02-23 Thread Olivier Sallou
Hi, I repackaged gbrowse2, I gonna update the svn of gbrowse on trunk I will let you know once ready to have a look ... Olivier Le 2/6/11 1:52 PM, Charles Plessy a écrit : Le Sun, Feb 06, 2011 at 10:49:42AM +0100, Olivier Sallou a écrit : I am looking at GBrowse2 packaging. If I succeed to

Bug#429610: GBrowse2 packaging

2011-02-24 Thread Olivier Sallou
. Regards Olivier Le 2/23/11 2:36 PM, Olivier Sallou a écrit : Hi, I repackaged gbrowse2, I gonna update the svn of gbrowse on trunk I will let you know once ready to have a look ... Olivier Le 2/6/11 1:52 PM, Charles Plessy a écrit : Le Sun, Feb 06, 2011 at 10:49:42AM +0100, Olivier Sallou a

Bug#429610: Gbrowse2 licensing issues, trigger upstream team at sourceforge

2011-03-15 Thread Olivier Sallou
I created a support request at upstream source to get more info on some licensing issues in files. I join mail exchange and reference Support Requests item #3201863, was opened at 2011-03-07 08:01 Message generated for change (Settings changed) made by scottcain You can respond by visiting: htt

Bug#429610: use debian javascript packages instead of included ones

2011-03-15 Thread Olivier Sallou
Package has been update to use javascript libraries packaged in Debian (prototype/scriptaculous) after maintainer has updated them on sid. -- gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-wnp

Bug#618689: ITP: squizz bioinformatics sequence converter tool

2011-03-17 Thread Olivier Sallou
Package: wnpp Severity: wishlist X-Debbugs-CC: debian-...@lists.debian.org Maintainer: Olivier Sallou Language: C License: GNU v2 Upstream Author: Nicolas Joly Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/ Description: Squizz is a sequence/alignment format checker, but it has

Bug#705128: ITP: libcofoja-java -- Java framework with annotation processing to provide runtime checkings

2013-04-10 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: libcofoja-java Version : 1.0~r139 Upstream Author : Google Inc * URL : https://code.google.com/p/cofoja/ * License : LGPL Programming Lang: Java Description : Java framework with

Bug#756291: (no subject)

2014-07-28 Thread Olivier Sallou
Subject: ITP: prodigal -- microbial (bacterial and archaeal) gene finding program Package: wnpp Owner: Olivier Sallou Severity: wishlist * Package name: prodigal Version : 2.60 Upstream Author : Doug Hyatt * URL : http://prodigal.ornl.gov/ * License : GPL

Bug#777089: Next python-mote pre-condition - issue with pybuild: python-backports.tempfile conflicting python-backports.weakref

2018-01-23 Thread Olivier Sallou
- Mail original - > De: "Andreas Tille" > À: debian-pyt...@lists.debian.org, "Debian Science List" > , 777...@bugs.debian.org > Envoyé: Lundi 22 Janvier 2018 15:04:10 > Objet: Re: Next python-mote pre-condition - issue with pybuild: > python-backports.tempfile conflicting > python-back

Bug#777089: Next python-mote pre-condition - issue with pybuild: python-backports.tempfile conflicting python-backports.weakref

2018-01-26 Thread Olivier Sallou
- Mail original - > De: "Olivier Sallou" > À: "Andreas Tille" > Cc: debian-pyt...@lists.debian.org, "Debian Science List" > , 777...@bugs.debian.org > Envoyé: Mardi 23 Janvier 2018 17:11:05 > Objet: Re: Next python-mote pre-condition -

Bug#777089: Preconditions for python-moto finished - help needed to build package itself

2018-02-02 Thread Olivier Sallou
- Mail original - > De: "Andreas Tille" > À: 777...@bugs.debian.org > Cc: debian-pyt...@lists.debian.org, "Debian Science List" > > Envoyé: Vendredi 2 Février 2018 09:16:55 > Objet: Preconditions for python-moto finished - help needed to build package > itself > > Hi, > > as you mig

Bug#829565: ITP: python-dictobj -- python library to access dictionary keys as instance attributes

2016-07-04 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: python-dictobj Version : 0.4 Upstream Author : William Grim * URL : https://github.com/grimwm/py-dictobj * License : Apache 2.0 Programming Lang: Python Description : python library

Bug#829566: ITP: python-dictobj -- python library to access dictionary keys as instance

2016-07-04 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name : python-dictobj Version : 0.4 Upstream Author : William Grim * URL : https://github.com/grimwm/py-dictobj * License : Apache 2.0 Programming Lang: Python Description : python library to access dictionary keys as

Bug#872343: ITP: thriftpy -- Pure python implementation of Apache Thrift

2017-08-16 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: thriftpy Version : 0.3.9 Upstream Author : Lx Yu * URL : https://thriftpy.readthedocs.org/ * License : MIT Programming Lang: Python Description : Pure python implementation of

Bug#872344: ITP: py-zipkin -- Library for using Zipkin in Python

2017-08-16 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: python-py-zipkin Version : 0.9.0 Upstream Author : Yelp, Inc. * URL : https://github.com/Yelp/py_zipkin * License : Apache 2.0 Programming Lang: Python Description : Library for

Bug#872409: ITP: biomaj3-core -- BioMAJ3 core library

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-core Version : 3.0.9 Upstream Author : Olivier Sallou * URL : http://biomaj.genouest.org * License : AGPL-3 Programming Lang

Bug#826550: ITP: python-consul -- client for Consul Service Discovery

2017-08-17 Thread olivier sallou
ok, I have upoaded python3 version (policy specifies to upload python3 only) Le jeu. 17 août 2017 à 12:41, Thomas Goirand a écrit : > On 08/17/2017 11:17 AM, olivier sallou wrote: > > Hi, > > I need the python3 consul client for a package, what is your progress on > >

Bug#872444: ITP: biomaj3-zipkin -- BioMAJ3 zipkin library

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-zipkin Version : 0.2.2 Upstream Author : Olivier Sallou * URL : http://biomaj.genouest.org * License : AGPL-3 Programming Lang

Bug#872445: ITP: biomaj3-user -- BioMAJ3 user library

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-user Version : 3.0.6 Upstream Author : Olivier Sallou * URL : http://biomaj.genouest.org * License : AGPL-3 Programming Lang

Bug#872446: ITP: biomaj3-download -- BioMAJ3 download library

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-download Version : 3.0.9 Upstream Author : Olivier Sallou * URL : https://github.com/genouest/biomaj- <http://biomaj.genouest.

Bug#872447: ITP: biomaj3-process -- BioMAJ3 process library

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-process Version : 3.0.7 Upstream Author : Olivier Sallou * URL : https://github.com/genouest/biomaj- <http://biomaj.genouest.org/>p

Bug#872449: ITP: biomaj3-daemon -- BioMAJ3 daemon library

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-daemon Version : 3.0.7 Upstream Author : Olivier Sallou * URL : https://github.com/genouest/biomaj- <http://biomaj.genouest.org/>

Bug#872450: biomaj3-cli -- BioMAJ3 client

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3-cli Version : 3.0.7 Upstream Author : Olivier Sallou * URL : https://github.com/genouest/biomaj- <http://biomaj.genouest.org/&

Bug#872451: biomaj3 -- BioMAJ3 workflow library

2017-08-17 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: biomaj3 Version : 3.1.3 Upstream Author : Olivier Sallou * URL : https://github.com/genouest/biomaj <http://biomaj.genouest.org/> * L

Bug#851256: ITP: bedops -- high-performance genomic feature operations

2017-01-13 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: root * Package name: bedops Version : 2.4.20 Upstream Author : Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds * URL : https://github.com/bedops/bedops * License : GPL Programming Lang: C++ Description : high-p

Bug#851342: ITP: baitfisher -- package for designing hybrid enrichment probes

2017-01-14 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: baitfisher Version : 1.0 Upstream Author : Christoph Mayer * URL : https://github.com/cmayer/BaitFisher-package * License : GPL Programming Lang: C++ Description : package for

Bug#851366: ITP: python-biomaj3 -- package for designing hybrid enrichment probes

2017-01-14 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: biomaj3 Version : 3.0.20 Upstream Author : Olivier Sallou * URL : *https://github.com/genouest/biomaj <https://github.com/genouest/biomaj>* * License : Affero GPL Programming Lang:

Bug#826550: any progress?

2017-02-10 Thread olivier sallou
Hi, I would need python(3)-consul for a package, is there any progress on this package? Thanks Olivier

Bug#851824: python 2 /3 binaries

2017-02-10 Thread olivier sallou
binaries are problems in Debian when managing modules with binaries. Solution is usually to rename binary in one of the modules For humanfriendly, you would get humanfriendly in python2 package and humanfriendly3 in pythno3 for example, each with its own manpage. Not very cool, as you need, in p

Bug#735158: ITP: minia -- short-read assembler

2014-01-13 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: minia Version : 1.6067 Upstream Author : Rayan * URL : http://minia.genouest.org * License : CeCILL Programming Lang: C Description : short-read assembler Minia is a short-read

Bug#737098: ITP: discosnp -- discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers

2014-01-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: discosnp Version : 1.0.1 Upstream Author : INRIA * URL : http://colibread.inria.fr/discosnp/ * License : CeCILL Programming Lang: C Description : discovering Single Nucleotide

Bug#737099: ITP: mapsembler2 -- bioinformatics targeted assembly software

2014-01-30 Thread Olivier Sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou * Package name: mapsembler2 Version : 2.0.5 Upstream Author : INRIA * URL : https://colibread.inria.fr/mapsembler2/ * License : CeCILL Programming Lang: C Description : bioinformatics targeted

Bug#976174: Made an itp

2020-12-22 Thread olivier sallou
You created an itp so an intent to package. If not willing to propose a apckage should be an rfp request for package. Ideally you package your app and propose it for review and upload. Requirements are an open source license and package install should not download anything. Only its execution can d

Bug#976174: Made an itp

2020-12-23 Thread olivier sallou
open source licensed, and does not download anything as part of > > the install process. It has two dependencies: Python and the lynx > > browser. Python 2 and 3 versions are included in the tarball but it is > > presumed that the preferred Python version is now Python 3, so that is

Bug#673724: Relicensing done by upstream

2020-08-07 Thread olivier sallou
Good news, upstream license has been modified after some rewriting (see issue closed https://github.com/jshint/jshint/issues/1234), so should fit for debian now

Bug#924086: ITP: python-irodsclient -- python3 API module for iRODS

2019-03-09 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: python-modules-t...@lists.alioth.debian.org * Package name: python-irodsclient Version : 0.8.1 Upstream Author : The University of North Carolina at Chapel Hill * URL : https://github.com/irods/python

Bug#933390: ITP: python-ftputil -- high level library for python ftp

2019-07-30 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-Debbugs-Cc: debian-de...@lists.debian.org, python-modules-t...@lists.alioth.debian.org * Package name: python-ftputil Version : 3.4 Upstream Author : Stefan Schwarzer * URL : https://ftputil.sschwarzer.net/trac

Bug#897610: ITP: gatk-native-bindings

2018-05-03 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: gatk-native-bindings Version : 1.0.0 Upstream Author : GATK authors * URL : *https://github.com/broadinstitute/gatk-native-bindings <ht

Bug#897614: ITP: gkl

2018-05-03 Thread olivier sallou
Package: wnpp Severity: wishlist Owner: Olivier Sallou X-CC: debian-med-packag...@lists.alioth.debian.org * Package name: gkl Version : 1.0.0 Upstream Author : Intel corporation * URL : *Accelerated kernel library for genomics* * License : MIT Programming