Re: [Denovoassembler-users] Understanding the coverage parameters

2012-06-06 Thread Sébastien Boisvert
Hello, Just out of curiosity, what kind of metagenomes are you dealing with ? As of Ray v2.0.0-rc8, these 3 parameters no longer exists. However, the values are still written to the Analysis file because they are useful for single-genome assemblies. For a single-genome assembly, you should see

[Denovoassembler-users] Understanding the coverage parameters

2012-06-06 Thread Keith Robison
Hello! Could you comment on when one might want to toy with the coverage options to Ray, and what sort of expected effects these would have Assembly options (defaults work well) -minimumCoverage minimumCoverage Sets manually the minimum coverage. If not provide