Re: [Denovoassembler-users] Ray for HLA analysis

2014-09-03 Thread Louis Letourneau
Actually we tried multiple wet lab appraoches on known samples, at the same time. I have targeted (liquid pull down) capture of the whole region plus other haplotypes I have key PCR regions done on illumina, 454, pacbio CCS I have long reads pacbio I'm fiddling with all of these to test haplotyp

Re: [Denovoassembler-users] Ray for HLA analysis

2014-09-03 Thread Adrian Pelin
What sort of NGS did you use? How long are the reads? Sincerely, Adrian On Sep 3, 2014, at 11:32 AM, "Boisvert, Sebastien" wrote: >> >> From: Louis Letourneau [louis.letourn...@mail.mcgill.ca] >> Sent: Tuesday, August 26, 2014 8:52 AM >> To: denovoassemb

Re: [Denovoassembler-users] Ray for HLA analysis

2014-09-03 Thread Boisvert, Sebastien
> > From: Louis Letourneau [louis.letourn...@mail.mcgill.ca] > Sent: Tuesday, August 26, 2014 8:52 AM > To: denovoassembler-us...@lists.sf.net > Subject: [Denovoassembler-users] Ray for HLA analysis > I was wondering if someone would have ideas/insight on ho