Actually we tried multiple wet lab appraoches on known samples, at the same
time.
I have targeted (liquid pull down) capture of the whole region plus other
haplotypes
I have key PCR regions done on illumina, 454, pacbio CCS
I have long reads pacbio
I'm fiddling with all of these to test haplotyp
What sort of NGS did you use? How long are the reads?
Sincerely,
Adrian
On Sep 3, 2014, at 11:32 AM, "Boisvert, Sebastien" wrote:
>>
>> From: Louis Letourneau [louis.letourn...@mail.mcgill.ca]
>> Sent: Tuesday, August 26, 2014 8:52 AM
>> To: denovoassemb
>
> From: Louis Letourneau [louis.letourn...@mail.mcgill.ca]
> Sent: Tuesday, August 26, 2014 8:52 AM
> To: denovoassembler-us...@lists.sf.net
> Subject: [Denovoassembler-users] Ray for HLA analysis
> I was wondering if someone would have ideas/insight on ho