[Denovoassembler-users] RE : Polymorphic genome assembly

2014-01-27 Thread Sébastien Boisvert
On 25 janvier 2014 16:17, Adrian Pelin [apeli...@gmail.com] wrote: > À : Denovoassembler-users@lists.sourceforge.net > Objet : Re: [Denovoassembler-users] Polymorphic genome assembly > > Dear Community, > > I was wondering if Ray handles in any particular way highly polymorphic > genomes? Usuall

[Denovoassembler-users] Mavericks build failure: 'make: *** [code/SeedingData/PathHandle.o] Error 1'

2014-01-27 Thread Bede Constantinides
Hi, I’m trying to install Ray on Mac OS 10.9. I get an error after a minute or so of running 'make PREFIX=ray-build' The last few lines of console output are as follows: ——— code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate operator>>(unsigned

Re: [Denovoassembler-users] Mavericks build failure: 'make: *** [code/SeedingData/PathHandle.o] Error 1'

2014-01-27 Thread Bede Constantinides
...I thought I should point out that I’m still experiencing this issue having aliased gcc-4.8 so that gcc, g++ etc do not point to Apple’s LLVM compiler. Yet the issue seems compiler related? Thanks, Bede On 27 Jan 2014, at 18:01, Bede Constantinides wrote: > Hi, > I’m trying to install Ray

[Denovoassembler-users] RE : Mavericks build failure: 'make: *** [code/SeedingData/PathHandle.o] Error 1'

2014-01-27 Thread Sébastien Boisvert
On 27 janvier 2014 13:01, Bede Constantinides [bede.constantini...@manchester.ac.uk] wrote: > À : denovoassembler-users@lists.sourceforge.net > Cc : sjack...@bcgsc.ca > Objet : [Denovoassembler-users] Mavericks build failure: 'make: *** > [code/SeedingData/PathHandle.o] Error 1' > > Hi, > I’m tr

[Denovoassembler-users] Segmentation fault with -k 31

2014-01-27 Thread Miller, Ruth
Hi, I am getting a segmentation fault when I try to analyse my data with –k31. The command is: mpiexec -n 80 /global/software/ray/ray230/Ray -k 31 -i HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq –o test4 The error is: mpiexec noticed that process rank 17 with PID 30162 on node cn