I'm using Unity
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https://bugs.launchpad.net/bugs/890523
Title:
Nautilus File Operations Window 'hides' behind folder windows on start
To manage notifications about
This behaviour is not evident today - i.e. the copy window is appearing
on top as would normally be expected so may not be easy to replicate.
Incidentally the 'File Operations' copy window is not visible using
alt+tab (this behaviour is persistent) - not sure if it should be
included here or enter