I have experienced the same inconsistencies as reported by OP between Ubuntu
20.04 guest and hosts. The guest is connected through SPICE. On top of that,
the clipboard has been working unreliably within the host system (i3). For
example, I often have to copy multiple times the same text to have it enter
the system clipboard. Moreover, calls to clipboard with CTRL+V can take a
few seconds. When the guest is powered off, the issue does not resurface. I
have tried to reproduce the issue with Debian 10 and other guests, with
no “luck”.

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https://bugs.launchpad.net/bugs/1872527

Title:
  Clipboard doesn't work 100% of the time in Ubuntu 20.04 (in KVM
  guests)

Status in qemu package in Ubuntu:
  Invalid
Status in spice package in Ubuntu:
  Invalid
Status in spice-protocol package in Ubuntu:
  Fix Released
Status in spice-vdagent package in Ubuntu:
  Fix Released
Status in virt-manager package in Ubuntu:
  Invalid
Status in spice-protocol source package in Focal:
  Incomplete
Status in spice-vdagent source package in Focal:
  Incomplete
Status in spice-vdagent package in Debian:
  Fix Released
Status in spice package in Fedora:
  Unknown

Bug description:
  https://gitlab.freedesktop.org/spice/linux/vd_agent/issues/9

  ---

  I'm testing Ubuntu 20.04 LTS (Focal Fossa) Beta.

  I installed Kubuntu 20.04 and virt-manager as I did many times on
  Ubuntu 18.04. Unfortunatelly when I run a VM (QEMU-KVM, libvirt,
  libspice-server1 and spice-vdagent) with another Kubuntu 20.04 guest
  or with Ubuntu 20.04 guest then clipboard doesn't work right.

  To test it, please install Kubuntu 20.04 and then install Kubuntu /
  Ubuntu 20.04 as VM (guest). Open some simple text editor and start
  Ctrl + C and Ctrl + V plain text. 90% of time it will work and 10% of
  time it won't.

  ProblemType: Bug
  DistroRelease: Ubuntu 20.04
  Package: virt-manager 1:2.2.1-3ubuntu1
  ProcVersionSignature: Ubuntu 5.4.0-21.25-generic 5.4.27
  Uname: Linux 5.4.0-21-generic x86_64
  ApportVersion: 2.20.11-0ubuntu26
  Architecture: amd64
  CasperMD5CheckResult: skip
  CurrentDesktop: KDE
  Date: Mon Apr 13 15:02:22 2020
  InstallationDate: Installed on 2020-04-09 (4 days ago)
  InstallationMedia: Kubuntu 20.04 LTS "Focal Fossa" - Beta amd64 (20200401)
  PackageArchitecture: all
  SourcePackage: virt-manager
  UpgradeStatus: No upgrade log present (probably fresh install)

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