Hi James,
Great question. In truth, you may need to run a few times to find out. Doing
that with a full pipeline would be tedious, but there is a descriptor in
clinical-pipeline named CuisOnlyPlaintextUMLSProcessor.xml that will only
obtain Umls cuis. It runs ~50,000 notes per hour on my
Sean (or others),
Of the various configuration options described below, which values/choices
would you recommend for best F1 measure for something like the shared clef 2013
task?
https://sites.google.com/site/shareclefehealth/
I'm looking for something that doesn't have to be the best
