Hi All,
I am trying to add my own dictionary to cTakes. I have added a lucene index for
the dictionary, but when the index is added, I would receive a null pointer
exception for the org.apache.ctakes.dependency.parser.util.DependencyUtility
class.
The stack trace is:
Hi Hoang,
Can you let me know what version of cTAKES you're using? I looked in
that location in trunk and found a null check, so it could be that it's
a bug that's been fixed already. In the meantime, if you just want to
see if your dictionary is working right, you could disable the
To Tomothy,
I have cTakes 3.0 install. I looked at the class and there is a null check but
for some reason, it is not catching. Also, when I use the indexes that came
with cTakes install, the program would parse without any errors.
Thank You,
Hoang Pham
-Original Message-
From:
To Timothy,
Sorry, I misspell your name before.
Thank You,
Hoang Pham
-Original Message-
From: Pham, Hoang [mailto:hp...@tuftsmedicalcenter.org]
Sent: Fri 3/27/2015 1:38 PM
To: dev@ctakes.apache.org
Subject: RE: Ctakes Null Pointer Error for
Dear all,
Do you know how to generate CUIs by programming, not using GUI.
It will be better if you can show me the code.
Thank you!
Yingcheng
On Fri, Mar 27, 2015 at 9:38 AM, Miller, Timothy
timothy.mil...@childrens.harvard.edu wrote:
Hi Hoang,
Can you let me know what version of cTAKES
I'm starting a new thread for this topic since it seems unrelated to the
one you replied to.
Check BagOfCuisGenerator, here's what it looks like in trunk:
Another way that you can see it is if you look at the
ClinicalPipelineFactory.java in the ctakes-clinical-pipeline/ folder. There
is a method called getCUIsthat will allow you to get CUIs from the
Identified Annotations.
Sincerely,
Michelle Chen :)
Be strong and of good courage; do not be
Dear Yingcheng Sun,
You can use BagOfCuisGenerator.java .
On Fri, Mar 27, 2015 at 10:48 AM, Yingcheng Sun yxs...@case.edu wrote:
Dear all,
Do you know how to generate CUIs by programming, not using GUI.
It will be better if you can show me the code.
Thank you!
Yingcheng
On Fri, Mar
Maite,
You already have a thread going with me offline. If you have a question please
ask it on that thread to refrain from spamming the devlist. Until I have a
chance to create decent documentation you are stuck with me.
Sean
From: Maite Meseure
Hi everyone,
I am currently using AggregatePlaintextFastUMLSProcessor.xml and trying to
use my own dictionary. I would like to understand ctakessnorx script file,
how it's made etc, I didn't find any info. Thank you.
--
--
Maïté Meseure Hugues
Hoang,
3.0 was released a long time ago (02/2013). (according to the tag/history,
it did't have the null fix until 6/2013 3.1?)
Yes, there is a null check near it but in a different method. I'm a
little confused though because his line numbers do align with the most
current version.
Anyways, Hoang, here are your options:
1) If you have the src distribution you can insert a null check yourself
based on the one in trunk and
To Pei,
Sorry, I was checking the wring folder. I'm actually using 3.2.1
dependecy-parser jar file.
Thank You,
Hoang Pham
-Original Message-
From: Pei Chen [mailto:chen...@apache.org]
Sent: Fri 3/27/2015 2:12 PM
To: dev@ctakes.apache.org
Subject: Re: Ctakes Null Pointer Error for
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