Attempting to use the sqlserver jdbc connection for the
DictionaryLookupAnnotator. When loading the aggregate engine, the connection
is established fine, but then it gives the error -
java.lang.Exception: Expected external resource to be:interface
Thanks Tim for your suggestion I'll try to experiment with the CasIOUtil method
and keep the uesr/dev list posted.
On Wednesday, April 15, 2015 7:07 AM, Miller, Timothy
timothy.mil...@childrens.harvard.edu wrote:
The standard way that we do save redundant processing time is by
Hi Alex,
This is some pretty odd behavior. Obviously, it is indicating that the
resource type loaded or specified is not the correct class. Specification is
(for the standard UMLS pipeline) in
ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml
lines #226 and
Ah, that led me in the right direction. I was accidentally combining Lucene
for the rxnorm orange book with jdbc for the lookup.
Swapped rxnorm orange book to the jdbc version and it works. Thanks!
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent:
Hi Tim,I was able to use CasIOUtil package to iterate on the Cas features.
First, I need it to create a new Cas and I used JCasFactory for that. Below is
the two lines of code. Thanks for your help
JCas jcas = JCasFactory.createJCas(); //create a new case
CasIOUtil.readJCas(jcas, new
