Re: Filter CVD output? [EXTERNAL]

It's a directory! Problem solved. Thanks Sean. And I will try out the FileTreeReader in it's place... Sent from Nine From: "Finan, Sean" Sent: 17 Jul 2017 21:08 To: dev@ctakes.apache.org Subject: RE: Filter CVD output? [EXTERNAL] Hi Arr

RE: Filter CVD output? [EXTERNAL]

Hi Arron, The TextReader is a fairly old class - it was written before I joined and I've never used it myself. I don't know why it would claim that it doesn't have access For files I always use the FileTreeReader. If I only want to read one file I just throw a copy into a directory by itself.

RE: Filter CVD output? [EXTERNAL]

Thanks Sean - I am finally getting somewhere now. I am able to run the following .piper using runPiperFile.bat // Commands and parameters to create a default plaintext document processing pipeline with UMLS lookup // Text Files Reader // Reads document texts from text files specified in a

RE: Filter CVD output? [EXTERNAL]

Hi Arron, In your version of the clinical pipeline gui you just need to set the value of OutputDirectory: add org.apache.ctakes.core.cc.pretty.html.HtmlTextWriter OutputDirectory=/my/directory In the pipeline creator gui you should be able to click the button with a folder icon to the right o

RE: Filter CVD output? [EXTERNAL]

Hi Sean - thanks for such a quick reply. This sounds interesting and something that would help me convey what has been found to non-nlpers. I do all of my processing just through CVD / CPE using the fastUMLSProcessor. So using the nice pipeline creator GUI I have got this far (by importing the

RE: Filter CVD output? [EXTERNAL]

Hi A.S., If you are interested in showing medical terms discovered in text to non-nlpers, you could try adding the html writer to your pipeline. ctakes-core org/apache/ctakes/core/cc/pretty/html/HtmlTextWriter.java It creates an html file that displays the document text marked with green, r

Re: Filter CVD output?

Hi A.S., Does the "Show Selected Annotations" menu item serve your purposes? https://uima.apache.org/d/uimaj-current/tools.html#cvd.toolsMenu On Mon, Jul 17, 2017 at 4:31 AM, Lacey A.S. wrote: > Hi - I spend a lot of time showing doctors the output of cTakes via what I > have parsed during po

Filter CVD output?

Hi - I spend a lot of time showing doctors the output of cTakes via what I have parsed during post processing. Problem being there is not context of where it is in the letter each term has been pulled from, visually anyway. It would be great if I could sit down and run a letter through the CVD p