Re: Interpret context out of clinical note [EXTERNAL]

2017-11-27 Thread Bhagwat Posane
Hello Sean, Thank you very much for your patience and bare with my basic queries. 1) What information you are trying to obtain from a note. An example sentence would help. >> Here are some example sentence from which I want to make out weather >> cystoscopy is done or not. >> ex: Note 1: In ad

Re: uimafit version and commit messages

2017-11-27 Thread Alexandru Zbarcea
Hi David, Thank you for your feedback. I upgraded to 2.3.0 because the entire code seems to be dependent upon 2.3.0. A quick look for the uimafit dependencies: [INFO] [INFO] Apache UIMA uimaFIT 2.3.0 [INFO] -

polarity tag in output for mention/concept.

2017-11-27 Thread Kathy Ferro
Good evening, I ran a few sentences through default clinical pipeline. It really reliable if it's only one term after negative, but I am get in-consistent value for polarity for the list of terms. Please see example below. 1. denies fatigue, malaise, fever, weight loss SignSymthomMention: pol

Re: uimafit version and commit messages

2017-11-27 Thread David Kincaid
Thanks for upgrading uimafit. I was thinking of giving it a try myself when I had a chance. I see that you upgrades to 2.30, but the most recent version is 2.4.0. Was there a problem with 2.4.0? - Dave On Mon, Nov 27, 2017 at 6:08 PM, Alexandru Zbarcea wrote: > Hi Sean, > > I have noticed your

uimafit version and commit messages

2017-11-27 Thread Alexandru Zbarcea
Hi Sean, I have noticed your commits for CTAKES-485 [2]. Kudos for the commit messages. I started to like the Jenkins integration [3], where in the changes section you can click on the change and takes you to the Jira issue. Will also ease the release process to identify the features. I have also

RE: Interpret context out of clinical note [EXTERNAL]

2017-11-27 Thread Finan, Sean
Hi Bhagwat. You wrote: > Now coming back to our original question for which this thread has been > initiated. > I was trying to get the context out of clinical notes. for ex. If any > procedure is happened or not on patient. > ... > By following this clues, I am nowhere. > Could you please prov

RE: Having trouble creating the first annotator.

2017-11-27 Thread Gandhi Rajan Natarajan
Hi Ritwik, I'm not able to find the link of Sean's response for this same question which we asked sometime back. So I'm attaching his response once again for you as follows: > Iis there any doc or guide on how to start writing our own annotator? There are two example annotators in the ctakes-e

Having trouble creating the first annotator.

2017-11-27 Thread Ritwik Jain
HI, I am new to C-takes development and i have taken the project in order to develop the first annotator using Ctakes. Can someone guide me by sharing the examples of the code for building the annotator. Regards Ritwik -- Ritwik Jain