Hi Yu, > Also do you know is there any command line I can run to annotate like a > thousand files automatically rather than copy and paster.
You could try the CPE gui : bin/runctakesCPE.sh Sean From: Liang, Yu [mailto:yu.li...@nyumc.org] Sent: Monday, December 15, 2014 4:51 PM To: dev@ctakes.apache.org Subject: Problem running cTakes-clinical pipeline --> AggregatePlaintextFastUMLSProcessor.xml Hi Yu, I think this is a current limitation in cTAKES. I think it has to do with negation not detecting if the line breaks are separating the sentences. Would you mind forwarding the example to dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>? I think Tim and others may be working on this issue. --Pei On Mon, Dec 15, 2014 at 3:54 PM, Liang, Yu <yu.li...@nyumc.org<mailto:yu.li...@nyumc.org>> wrote: On Dec 15, 2014, at 2:58 PM, Liang, Yu <yu.li...@nyumc.org<mailto:yu.li...@nyumc.org>> wrote: Hi Pei Chen, Could you please look at the following example I run, I think the result is not accurate. The polarity of illness is -1 but for fever, vomiting, diarrhea,and pain are all +1. Also do you know is there any command line I can run to annotate like a thousand files automatically rather than copy and paster. Yu Liang [cid:DF19883E-B993-4CD0-90BD-F285A3C1A5A3@wireless.nyumc.org] Yu Liang CHIBI
