Re: Question about the pipeline

2015-02-10 Thread Maite Meseure Hugues
that you are using and make sure that it passes arguments: %* for Windows or $@ for unix/linux -Original Message- From: Maite Meseure Hugues [mailto:meseure.ma...@gmail.com] Sent: Thursday, February 05, 2015 9:42 AM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Yes

RE: Question about the pipeline

2015-02-05 Thread Finan, Sean
:51 AM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline I see. In my case, I am using the CPE descriptor saved from the GUI for CmdLineCpeRunner as said Sean. I've selected AggregatePlaintextProcessor.xml as AE but I have this error: Couldn't initialize processing engine

Re: Question about the pipeline

2015-02-05 Thread Maite Meseure Hugues
@ctakes.apache.org Subject: Re: Question about the pipeline I see. In my case, I am using the CPE descriptor saved from the GUI for CmdLineCpeRunner as said Sean. I've selected AggregatePlaintextProcessor.xml as AE but I have this error: Couldn't initialize processing engine. Initialization of CAS

RE: Question about the pipeline

2015-02-05 Thread Finan, Sean
@ctakes.apache.org Subject: Re: Question about the pipeline Yes, it does but only in Eclipse, not in command line even though I am in the good directory. I have to look at the classpath more in details probably. Thanks for your replies. On Thu, Feb 5, 2015 at 8:08 AM, Finan, Sean sean.fi

Re: Question about the pipeline

2015-02-04 Thread Maite Meseure Hugues
...@cchmc.org 513-803-9032 -Original Message- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Tuesday, February 03, 2015 2:47 PM To: dev@ctakes.apache.org Subject: RE: Question about the pipeline Hi Maite, RunCPE is a good find, and if it fits your bil hten you

RE: Question about the pipeline

2015-02-04 Thread Lingren, Todd
-Original Message- From: Maite Meseure Hugues [mailto:meseure.ma...@gmail.com] Sent: Wednesday, February 04, 2015 12:59 PM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Interesting, Todd thank you and how do you use CMdLineCpeRunner basically? Because I tested in cmd line

RE: Question about the pipeline

2015-02-04 Thread Lingren, Todd
Lingren Biomedical Informatics Cincinnati Children’s Hospital todd.ling...@cchmc.org 513-803-9032 -Original Message- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Tuesday, February 03, 2015 2:47 PM To: dev@ctakes.apache.org Subject: RE: Question about the pipeline Hi

Re: Question about the pipeline

2015-02-03 Thread Maite Meseure Hugues
). Sean -Original Message- From: Tol O. [mailto:tol...@gmail.com] Sent: Monday, February 02, 2015 6:56 PM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Maite Meseure Hugues meseure.maite@... writes: Hello all, Thank you for your preceding answers. I have

RE: Question about the pipeline

2015-02-03 Thread Finan, Sean
: Tuesday, February 03, 2015 9:01 AM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Thanks a lot Sean for your detailed reply. I've also found RunCPE.java that allows to put the input and outpur directories in arguments in the environment and do the same job than the CPE-GUI

Re: Question about the pipeline

2015-02-03 Thread Maite Meseure Hugues
, February 03, 2015 9:01 AM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Thanks a lot Sean for your detailed reply. I've also found RunCPE.java that allows to put the input and outpur directories in arguments in the environment and do the same job than the CPE-GUI -at least

RE: Question about the pipeline

2015-02-03 Thread Finan, Sean
can take a look at that and see if it helps? Sean -Original Message- From: Tol O. [mailto:tol...@gmail.com] Sent: Tuesday, February 03, 2015 7:35 PM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Sean, Thank you for the detailed reply. As you mentioned, I had

Re: Question about the pipeline

2015-02-02 Thread Tol O .
Maite Meseure Hugues meseure.maite@... writes: Hello all, Thank you for your preceding answers. I have a few questions regarding the pipeline example to run cTakes programmatically. I am running ExampleAggregatePipeline.java with ExampleHelloWorldAnnotator but I would like to know how I

RE: Question about the pipeline

2015-02-02 Thread Finan, Sean
02, 2015 6:56 PM To: dev@ctakes.apache.org Subject: Re: Question about the pipeline Maite Meseure Hugues meseure.maite@... writes: Hello all, Thank you for your preceding answers. I have a few questions regarding the pipeline example to run cTakes programmatically. I am running

RE: Question about fast pipeline

2015-01-12 Thread Finan, Sean
Hi Michelle, Did your error have only Could not find . as absolute or did it also have or in ... or in ...? If you see ... or in ... then this is a new issue. If you don't, then you should update your source. If you need to run the release binary then let me know and I can work out

Re: Question about fast pipeline

2015-01-12 Thread Michelle Chen
It did have or in ... or in .. I removed it because I didn't want my folder paths to be sent out and didn't realize that it was important. Sincerely, Michelle Chen :) Be strong and of good courage; do not be afraid, nor be dismayed, for the Lord your God is with you wherever you go. ~Joshua 1:9