RE: Scaling cTakes

2014-12-09 Thread Finan, Sean
From: Geise, Brandon D. [bdge...@geisinger.edu] Sent: Tuesday, December 09, 2014 9:13 AM To: dev@ctakes.apache.org Subject: RE: Scaling cTakes Thanks again Sean for the advice. Just by changing the pipeline to use the fast dictionary led to quadrupling the processing speed. Any

RE: Scaling cTakes

2014-12-05 Thread Finan, Sean
Hi Brandon, It sounds like you've got a decent pipeline set up. To increase the speed you could try swapping out use of ctakes-dictionary-lookup with ctakes-dictionary-lookup-fast in the AE. Check ctakes-clinical-pipeline/desc/[ae]/AggregatePlaintextFastUMLSProcessor.xml for an example.

RE: Scaling cTakes

2014-12-05 Thread Savova, Guergana
PM To: dev@ctakes.apache.org Subject: RE: Scaling cTakes Hi Brandon, It sounds like you've got a decent pipeline set up. To increase the speed you could try swapping out use of ctakes-dictionary-lookup with ctakes-dictionary-lookup-fast in the AE. Check ctakes-clinical-pipeline/desc/[ae

RE: Scaling cTakes

2014-12-05 Thread Geise, Brandon D.
Thanks Sean. I'll take a look and see if this speeds the pipeline up. Thanks, Brandon -Original Message- From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] Sent: Friday, December 05, 2014 1:14 PM To: dev@ctakes.apache.org Subject: RE: Scaling cTakes Hi Brandon, It sounds

Re: Scaling cTakes

2014-12-05 Thread jay vyas
...@childrens.harvard.edu] Sent: Friday, December 05, 2014 1:14 PM To: dev@ctakes.apache.org Subject: RE: Scaling cTakes Hi Brandon, It sounds like you've got a decent pipeline set up. To increase the speed you could try swapping out use of ctakes-dictionary-lookup with ctakes-dictionary-lookup-fast

RE: Scaling cTakes

2014-12-05 Thread Geise, Brandon D.
Thanks Jay, I'll have to take a look at this too. -Original Message- From: jay vyas [mailto:jayunit100.apa...@gmail.com] Sent: Friday, December 05, 2014 2:40 PM To: dev@ctakes.apache.org Subject: Re: Scaling cTakes on a tangential note, we do have example of running ctakes