On 01/27/2014 08:44 PM, Tim Miller wrote:
That is a good point, and something I was wondering about. Having now
looked at both the ctakes and opennlp code for the sentence splitter
it seems like there is a lot of overlap. I would've thought it was
just a matter of converting annotations into
@ctakes.apache.org
Subject: Re: sentence detector newline behavior
On 01/27/2014 08:44 PM, Tim Miller wrote:
That is a good point, and something I was wondering about. Having now
looked at both the ctakes and opennlp code for the sentence splitter
it seems like there is a lot of overlap. I would've
On 01/27/2014 03:52 PM, Tim Miller wrote:
OK, with the most recent version I am able to replicate the
performance I was getting before. Thanks a lot Jörn!
Assuming this is in the next incremental release of opennlp, how
quickly can we get a re-trained model into cTAKES?
I am currently
On 01/26/2014 11:29 PM, Miller, Timothy wrote:
Yes, this fixes the whitespace sentence issue but the evaluation issue
remains. I believe the problem is in SentenceSampleStream, where in the
following block the whitespace trim happens before the LF character is
replaced with the \n character. So
OK, with the most recent version I am able to replicate the performance
I was getting before. Thanks a lot Jörn!
Assuming this is in the next incremental release of opennlp, how quickly
can we get a re-trained model into cTAKES? I heard from a researcher at
AMIA who tried cTAKES and because
From: timothy.mil...@childrens.harvard.edu
To: dev@ctakes.apache.org
Subject: Re: sentence detector newline behavior
OK, with the most recent version I am able to replicate the performance
I was getting before. Thanks a lot Jörn!
Assuming this is in the next incremental release of opennlp
.
-- James
-Original Message-
From: Tim Miller [mailto:timothy.mil...@childrens.harvard.edu]
Sent: Monday, January 27, 2014 8:52 AM
To: dev@ctakes.apache.org
Subject: Re: sentence detector newline behavior
OK, with the most recent version I am able to replicate the performance
I was getting
to it were
- the list of end of sentence candidate characters
- and the handling of newlines
-- James
-Original Message-
From: Tim Miller [mailto:timothy.mil...@childrens.harvard.edu]
Sent: Monday, January 27, 2014 1:45 PM
To: dev@ctakes.apache.org
Subject: Re: sentence detector newline
with it and if anything I scratch my head and doubt my
competence. ;-)
Regards,
Paula
Date: Mon, 27 Jan 2014 09:52:00 -0500
From: timothy.mil...@childrens.harvard.edu
To: dev@ctakes.apache.org
Subject: Re: sentence detector newline behavior
OK, with the most recent version I am able to replicate
struggling a bit with it and if anything I scratch my head and doubt my
competence. ;-)
Regards,
Paula
Date: Mon, 27 Jan 2014 09:52:00 -0500
From: timothy.mil...@childrens.harvard.edu
To: dev@ctakes.apache.org
Subject: Re: sentence detector newline behavior
OK, with the most recent version I am able
On 01/25/2014 10:03 PM, Miller, Timothy wrote:
On 01/25/2014 12:24 PM, Jörn Kottmann wrote:
The code which computes the spans tries to remove white space from it.
Removing the white space from a whitespace only sentence is causing
the exception your are seeing. Which response would you expect
On 01/26/2014 09:59 AM, Jörn Kottmann wrote:
The evaluation should ignore white spaces. I committed now my fix, it
would be nice if you can
test it.
There might be still something wrong. In my test data I replaced all
question marks with white spaces, and the result
is slightly worse
, 2014 3:42 PM
To: dev@ctakes.apache.org
Subject: RE: sentence detector newline behavior
Thanks James
but then no typical sentence ending punctuation at the end of the
line
Gotcha.
So simply using Lines would not suffice in those cases because it
would run together sentences where
-
removed in those last examples ...
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Wednesday, January 22, 2014 3:42 PM
To: dev@ctakes.apache.org
Subject: RE: sentence detector newline behavior
Thanks James
but then no typical sentence ending
On 01/25/2014 01:33 PM, Miller, Timothy wrote:
Thanks Joern,
I'll try it. My understanding is I just need to give it my training
data, with the special character I used replaced with the literal string
LF and each line in the file is an example sentence.
Yes, exactly.
Just thinking about the
On 01/25/2014 03:03 PM, Miller, Timothy wrote:
I'm running into one issue, it gets tripped up on sentences with
line-ending spaces. I could easily remove them with a script but by
default they are in there. It happens when a sentence example ends:
...BILAT HEMATOMAS. LF
(There is a period,
On 01/25/2014 12:24 PM, Jörn Kottmann wrote:
The code which computes the spans tries to remove white space from it.
Removing the white space from a whitespace only sentence is causing
the exception your are seeing. Which response would you expect from
the sentence detector? Should a white
On 01/23/2014 10:06 PM, Tim Miller wrote:
Just an FYI, a while back I did some of these annotations myself on
MIMIC to get around this issue. I replaced the newline character with
a special (non-English) character, then pre-processed ctakes input to
replace newlines with that character, then
PM
To: dev@ctakes.apache.org
Subject: RE: sentence detector newline behavior
Thanks James
but then no typical sentence ending punctuation at the end of the line
Gotcha.
So simply using Lines would not suffice in those cases because it
would run together sentences where there are more
Subject: RE: sentence detector newline behavior
Thanks James
but then no typical sentence ending punctuation at the end of the line
Gotcha.
So simply using Lines would not suffice in those cases because it
would run together sentences where there are more than one on a line
, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Wednesday, January 22, 2014 3:42 PM
To: dev@ctakes.apache.org
Subject: RE: sentence detector newline behavior
Thanks James
but then no typical sentence ending punctuation at the end of the line
Gotcha.
So simply using Lines would not suffice
=mayo@ctakes.apache.org] On Behalf Of
Jörn Kottmann
Sent: Tuesday, January 21, 2014 4:29 AM
To: dev@ctakes.apache.org
Subject: Re: sentence detector newline behavior
Yes, exactly, OPENNLP-602 is about training a sentence detector model
which can use a new line as a end-of-sentence character
...@childrens.harvard.edu]
Sent: Wednesday, January 22, 2014 1:33 PM
To: dev@ctakes.apache.org
Subject: RE: sentence detector newline behavior
Just whistling in the wind here ...
Perhaps before any changes are made to universally toggle cTakes in one
direction or the other, we can take a poll of when where
cTakes
be done for the last bit where punctuation is missing.
-Original Message-
From: Masanz, James J. [mailto:masanz.ja...@mayo.edu]
Sent: Wednesday, January 22, 2014 3:07 PM
To: 'dev@ctakes.apache.org'
Subject: RE: sentence detector newline behavior
I know there are notes where
Yes, exactly, OPENNLP-602 is about training a sentence detector model
which can use a new line as a end-of-sentence character.
In case you have certain rules to split sentences we should have a look
at them. The Sentence Detector could be extended to support
a user provided rule based
Hi all,
currently I have quite a bit of time to work on OpenNLP, and would like
to help you
out with this issue.
Here is the follow up issue for this change:
https://issues.apache.org/jira/browse/OPENNLP-602
I am still trying to figure out what would be the best option to
implement this.
In
OK I've started doing this, was able to get training working on a very
small example, will try doing slightly bigger.
Tim
On 05/22/2013 08:03 AM, Jörn Kottmann wrote:
On 05/22/2013 01:17 PM, Miller, Timothy wrote:
That's awesome! It might be worth trying at least. How does the training
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