Re: Apache cTAKES Example Application?

2014-04-16 Thread andy mcmurry
Lowering the barrier to entry = worth the effort Notice the NCBO users mailing list has solid routine comments and discussion about the VM "appliance" they distribute. On Wed, Apr 16, 2014 at 9:37 AM, Pei Chen wrote: > We spent some time in the past to make it easier for users to launch the >

RE: errors when run BagOfCUIsGenerator.java

2014-04-16 Thread Liu, Ying
Sorry bother the email list. The problem is caused by my VPN connection. I connected to VPN and it didn't allow me to access any other website. So, my UMLS username and password didn't get through. Thanks, Ying From: Finan, Sean [sean.fi...@childrens.h

RE: errors when run BagOfCUIsGenerator.java

2014-04-16 Thread Finan, Sean
Try to open https://uts-ws.nlm.nih.gov If that works then try https://uts-ws.nlm.nih.gov/restful/isValidctakes.umlsuser and see if you get a message like "This XML file does not appear to have any style information associated with it. The document tree is shown below." If that works and you

RE: errors when run BagOfCUIsGenerator.java

2014-04-16 Thread Chen, Pei
Ying, Are you behind a proxy or firewall? If you're trying to use the umls resources, it attempts to make a call to their umls service to validate your credentials. --Pei > -Original Message- > From: Liu, Ying [mailto:l...@advisory.com] > Sent: Wednesday, April 16, 2014 1:13 PM > To: dev@

errors when run BagOfCUIsGenerator.java

2014-04-16 Thread Liu, Ying
It failed when run BagOfCUIsGenerator.java. The followings are the error information. Thanks for your help. Ying Exception in thread "main" org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookup

Apache cTAKES Example Application?

2014-04-16 Thread Pei Chen
We spent some time in the past to make it easier for users to launch the CVD/CPE. But based on the questions/discussions, I think we are passed this stage and a very common use case would be for developers to use cTAKES as a lib, extend a class or two and then, embed it into their existing app. I

RE: Ctakes-data-vis

2014-04-16 Thread Chen, Pei
John, How we use the VM is up to us to decide. For an online demo, We can certainly load up cTAKES and it's resources. If it's a web app, we can prompt the user to enter umls credentials if they choose the umls resources? --Pei > -Original Message- > From: John Green [mailto:john.trav

RE: ctakes-vm.apache.org

2014-04-16 Thread Chen, Pei
Hi Andy, Let me know if you're able to ssh -l -v to and...@ctakes-vm.apache.org I believe all you would need to do is run ssh-keygen and then copy your public key to id.apache.org. James: opiekey is only required for sudo access. I see you're able to log in successfully already. Nethertheless,

Re: suggestion for default pipelines

2014-04-16 Thread Richard Eckart de Castilho
It would be nice if uimaFIT provided a Maven plugin to automatically generate descriptors for aggregates. Maybe if we come up with a convention for factories, e.g. a "class with static methods that do not take any parameters and that return descriptors", or "methods that bear a specific Java annot