Re: sectionSegmentAnnotator

2014-07-02 Thread Chen, Pei
One can try the CDASegmentAnnotator. Both are rules/regex based but it's much simpler and doesn't require the find struct 3rd party lib. Sent from my iPhone On Jul 1, 2014, at 10:19 PM, Harpreet Khanduja hsk5...@rit.edu wrote: Hello,p Thanks for getting back. I tried again and this is the

Re: sectionSegmentAnnotator

2014-07-02 Thread Harpreet Khanduja
Hello, Thank you so much for getting back, it works but I am trying to access the features (like segmentid, preferredText, begin and end ) of a segment object but I am not able to access these. I am using AnnotationFS curAnnot = (AnnotationFS) aIterator.get(); which is inside a method

Release Apache cTAKES 3.2.0

2014-07-02 Thread Himanshu Singhal
Hi, When will be ctakes 3.2.0 will be released officially. Can you share link where I can download the ctakes resources for the version 3.2.0. I request to share links for the developer documentation for the latest version i.e. 3.2.0, so that I can setup ctakes in eclipse and able to build it

Re: Release Apache cTAKES 3.2.0

2014-07-02 Thread Chen, Pei
Himanshu, There is a RC1 available for voting (see recent [VOTE] thread from this list.) Please feel free to try it out and vote. It will be release once there are more than 3 +1 binding votes. Sent from my iPhone On Jul 2, 2014, at 2:32 PM, Himanshu Singhal himanshusinghal...@gmail.com

RE: [VOTE] Release Apache cTAKES 3.2.0

2014-07-02 Thread Finan, Sean
+1 Pulled fresh candidate, built, and ran Clinical using CPE without problem. Other than that, no testing. SVN gave me a problem initially (checked out as anonymous) asking for a password then flunking the checkout, but an update completed it. I blame the heat.

Re: cTAKES 3.2 Analysis Batch Issue

2014-07-02 Thread vijay garla
Hi clayton, I assume you are running the fracture_demo.xml cpe - is that correct? The CPE GUI should give you the option to set the analysis batch. (see attached screenshot). That being said, the analysis_batch is not required (it will default to the current date). Can you attach the log file?

Re: Building

2014-07-02 Thread vijay garla
the concept graph used by the webapp is defined in ytex.properties. You can also override it using the ytex.conceptGraph system property (add -Dytex.conceptGraph=xxx to the beginning of the ytexweb.bat java command line). I'm not sure about why you don't see any log output: when I run this line

Re: Building

2014-07-02 Thread vijay garla
The ytexWeb application tries to look up concepts from terms using the ytex dictionary lookup table, which is a small subset of the UMLS. Can you try specifying cuis? That skips the lookup - if the concepts are in the concept graph, this will work. Best, vj On Sun, Jun 29, 2014 at 6:10 PM,