Re: Change from SNOMEDCT to SNOMEDCT_US affecting v_snomed_fword_lookup

Awesome. This is just what I needed for the longest time. I'm having a slight issue. When running either the ytex pipeline or ytex version of the AggregatePlaintextUMLSProcessor I get an error during initialization. My DictionaryLookupAnnotator.xml is raising a

Web server

Im trying to deploy the cTakes web-server code someone already wrote (who wrote it btw?). Im running into deployment issues in eclipse with tomcat 7 on mac... I can get into details but for now: is it in a working state? Im learning as I go and it looks in order and the code is solid... Also,

Acronym annotator

Are there any acronym annotators and disambiguators? What are people doing in production elsewhere? Im learning the heart of cTakes and UIMA by the numbers right now and I think writing an annotator of my own will be the best way to solidify the information. If no one has it done already, I

RE: Web server

Hi John, Have you (or another) thought about modifying the Uima Simple Server to run a cTakes pipeline? http://uima.apache.org/sandbox.html#simple-server -Original Message- From: John Green [mailto:john.travis.gr...@gmail.com] Sent: Thursday, August 21, 2014 3:06 PM To:

RE: Web server

I have. I read the docs, it mentions more information but the tutorial was very short. It seems there are simple get requests with the xml ae for output built into the existing sandbox code, so I just wanted to hash that first before starting on a new thread. Do you have experience with

RE: Web server

And you did so with ctakes? Thats great, ill try it.  JG — Sent from Mailbox for iPhone On Thu, Aug 21, 2014 at 12:46 PM, Finan, Sean sean.fi...@childrens.harvard.edu wrote: Do you have experience with uima simple server? A few months ago I set it up and ran it just for kicks. It is simple,

Re: Web server

Disregard the couldnt deploy question, got it. Ill try and update the docs (e.g. Create a doc for the web server as it matures) but for folks like me linking web-inf/lib to the maven dependencies was not immediately clear. Figured it out. Other questions still stand :-) JG — Sent from Mailbox

Re: Change from SNOMEDCT to SNOMEDCT_US affecting v_snomed_fword_lookup

Ah, I just switched to the ytex branch and all is good now. The SNOMED_US issue has been plaguing me for weeks now so thanks a million for that. On Thu, Aug 21, 2014 at 2:13 PM, Clayton Turner caturn...@g.cofc.edu wrote: Awesome. This is just what I needed for the longest time. I'm having a

Re: Change from SNOMEDCT to SNOMEDCT_US affecting v_snomed_fword_lookup

Clayton - this indeed did fix the @db.schema@ for you? Im gonna try and reproduce (havent had time yet) then ill close the Jira ticket out. JG — Sent from Mailbox for iPhone On Thu, Aug 21, 2014 at 1:24 PM, Clayton Turner caturn...@g.cofc.edu wrote: Ah, I just switched to the ytex branch and

Re: Change from SNOMEDCT to SNOMEDCT_US affecting v_snomed_fword_lookup

It didn't fix the @db.schema@ - I just went in and manually changed it whenever the CPE complained. I assume that's supposed to be reading from ytex.properties, but mine was set and it didn't resolve that @db.schema@ issue. On Thu, Aug 21, 2014 at 5:00 PM, John Green john.travis.gr...@gmail.com