MySQL Rest Service” would make sense.
Also, perhaps it would make sense to link to it from the official
ctakes-web-rest’s README for those looking to use MySQL (wouldn’t break
licensing rules, as far as I know).
On Thu, Jun 13, 2019 at 9:34 PM Matthew Vita
wrote:
> Hi Gandhi,
>
>
Hi Gandhi,
Sorry if I wasn't clear or my README.md didn't completely make sense.
I tested with both full and default pipelines. The results can be found
here:
https://github.com/MatthewVita/cTAKES-Special-Case-QA/tree/master/REST%20MySQL%20Results
Thanks,
Matthew Vita
On Thu, Jun 13, 2019
to try with this
issue. I'm not quite sure of how to move forward :).
Thanks,
Matthew Vita
On Wed, Jun 5, 2019 at 11:23 PM Matthew Vita
wrote:
> Sorry for the delay (work is busy) - will report back soon with the
> pipelines.
>
> Thanks,
> Matthew Vita
>
>
>
> On Mon, Ju
Sorry for the delay (work is busy) - will report back soon with the
pipelines.
Thanks,
Matthew Vita
On Mon, Jun 3, 2019 at 8:19 AM gandhi rajan wrote:
> Hi Matt, we gotta see what are the types of pipelines used in both cases.
> Did you tried using pipeline=full instead pipeline=d
can be changed to
“GoTeamEpsilon/ctakes-mysql-rest-service”?
Thanks,
Matthew Vita
On Fri, May 31, 2019 at 10:11 PM gandhi rajan
wrote:
> Hi Matt, I would check whether the XML output from cTAKES contains the
> terms to isolate the issue.
>
> On Saturday, June 1, 2019, Matthew
rustrating part is there's no errors in the catalina logs :).
Thanks,
Matthew Vita
On Thu, May 30, 2019 at 2:52 PM gandhi rajan
wrote:
> Hi Matt,
>
> The ctakes web rest module in cTAKES svn trunk is the latest which I
> checked in and later modified by Tim.
>
> On Thursday
Hi Gandhi, Tim, Sean, and Community,
I’ve been fixing up some of the README instructions for
https://github.com/GoTeamEpsilon/ctakes-rest-service on my local.
Unfortunately, it’s not working in its current state. I'm still debugging
it - is svn co
way:
https://github.com/tmills/ctakes-docker#running-with-custom-dictionaries
The documentation (and examples) aren't perfect. They should generally
point you in the right direction, but PRs and notes (on your experience)
are appreciated to improve them!
Thanks,
*Matthew Vita*Healthcare Softwar
Hi all,
It's not using the REST service, but this docker solution allows for
distributed queuing: https://github.com/tmills/ctakes-docker
This may help with your large text volumes.
On Mon, May 21, 2018, 9:02 AM Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Even if you
please don't mind the draft state):
https://docs.google.com/document/d/1SnykahMZft3vkVZmzpYr1NZjdsbW6NCZQn59Jk8xwus/edit#heading=h.ylkq3w7gocsz
Please let Gandhi and myself know your feedback thus far. Also, what would
be the best annotators to describe?
Thanks,
Matthew Vita
www.matthewvita.com
iendly web ui
Thanks,
Matthew Vita
www.matthewvita.com
On Tue, Jan 2, 2018 at 7:34 AM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> 3 cheers Matthew!
>
> -Original Message-
> From: John Green [mailto:john.travis.gr...@gmail.com]
> Sent: Sunday, December
step is
to point cTAKES (within the context of the rest service) at MySQL :).
Thanks,
Matthew Vita
www.matthewvita.com
On Mon, Dec 18, 2017 at 1:27 PM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi Matthew,
>
> I've heard of CouchDB but know nothing about it. At a
is nice to have, don't read into it too much :).
Thoughts?
Thanks,
Matthew Vita
www.matthewvita.com
On Mon, Dec 18, 2017 at 7:23 AM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Fantastic!
>
> I am glad that you found the issue - that wouldn't have been a
> stra
in the
OpenEMR space are going to want MySQL/MariaDB users :). Not a huge deal
though.
Thanks,
Matthew Vita
www.matthewvita.com
was the right approach (
https://github.com/GoTeamEpsilon/ctakes-rest-service/issues/2#issuecomment-351921458).
Going to spend some time on it over the weekend :).
I'm very grateful for Gandhi and you all.
cTAKES + REST = many possibilities as we enter into the new year!
Thanks,
Matthew Vita
> could be wrapped in a docker container that would be really powerful,
I am on it!
Thanks,
Matthew Vita
www.matthewvita.com
On Fri, Dec 15, 2017 at 6:46 AM, Miller, Timothy <
timothy.mil...@childrens.harvard.edu> wrote:
> Great, that's very helpful.
>
> I'l
.
I'm so sorry for my silence/lack of updates!!! Very excited to see what
Gandhi's updates are looking like and enriching the JSON response payload.
Thanks,
Matthew Vita
www.matthewvita.com
On Tue, Dec 5, 2017 at 10:24 AM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
&
Awesome, work. I agree it will certainly ease our process!
I have created a ticket to discuss the next steps with the REST service now
that this is complete (hoping we can delete some unneeded code!):
https://github.com/GoTeamEpsilon/ctakes-rest-service/issues/23
Thanks,
Matthew Vita
As far as a discussion board, the project I'm helping to run has been
enjoying Discourse: https://community.open-emr.org/
More information here: https://github.com/discourse/discourse
Thanks,
Matthew Vita
www.matthewvita.com
On Sat, Nov 18, 2017 at 10:23 AM, Finan, Sean <
sean
Alex,
Gandhi covered everything we are working on. Please do mail me if you'd
like to join in and I can give you some open tasks.
Thanks,
Matthew Vita
www.matthewvita.com
On Mon, Oct 30, 2017 at 8:46 PM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi Alex
Hi Bhagwat,
John is correct.
The REST interface project is in the works. Please let me know and you can
work with Gandhi and myself on it!
Thanks,
Matthew Vita
www.matthewvita.com
On Mon, Oct 30, 2017 at 9:08 AM, John Green <john.travis.gr...@gmail.com>
wrote:
> Only if
will
prepare it with a very rich README.
I will provide my updates over the coming days.
Thanks,
Matthew Vita
www.matthewvita.com
On Sun, Oct 29, 2017 at 7:47 AM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi Gandhi,
>
> Thank you for the additional information. Having
Please note that the solution will not use a request/response cycle because
my main use case is with EMRs and I am batching up requests so as to not
exhaust cTAKES :)
Thanks,
Matthew Vita
www.matthewvita.com
On Wed, Oct 25, 2017 at 9:27 AM, Matthew Vita <matthewvit...@gmail.com>
about
what work is left (I estimate that I will be done in a month and a half).
Please do note that this solution is 100% free/open source :)
Thanks,
Matthew Vita
www.matthewvita.com
On Wed, Oct 25, 2017 at 6:20 AM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi Al
found on the subject:
https://www.webpt.com/cpt-codes
Note that you'll have to build your own dictionary for handling these.
Before getting into that, maybe studying up the codes first is best.
Thanks,
Matthew Vita
www.matthewvita.com
On Sun, Oct 22, 2017 at 1:06 AM, Hari, Sekhar <sekha
Sirisha,
I'm so happy to hear that you were able to get the dictionary outputted.
Your error logs were beyond my understanding so this is a relief.
Please let me know how the dictionary goes!
Thanks,
Matthew Vita
www.matthewvita.com
On Wed, Oct 18, 2017 at 12:04 PM, Sirisha Pulivarthi
it working with the XML jdbc configuration yet so if you (or
anyone else) could share an example that would be amazing.
Thanks,
Matthew Vita
www.matthewvita.com
On Tue, Oct 10, 2017 at 9:57 PM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi Kathy,
>
> Good t
Thank you all for the suggestions. I also received some advice from Tim in
a Github comment.
As always, I will be thoroughly documenting the solution for the community.
Plan on tackling this right after I get the MySQL dictionary support
working and documented.
Thanks,
Matthew Vita
NOT NULL,
SNOMEDCT_US BIGINT NOT NULL
);
CREATE INDEX IDX_SNOMEDCT_US ON SNOMEDCT_US (CUI);
Quick question: do you use the AIR table?
Thanks,
Matthew Vita
www.matthewvita.com
On Mon, Oct 9, 2017 at 1:14 AM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
>
Gandhi,
Thank you for the reply. Do you have any documentation on how to accomplish
this?
Thanks,
Matthew Vita
www.matthewvita.com
On Sun, Oct 8, 2017 at 3:14 AM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi Mathew,
>
> I feel using MySQL Db would be b
; />
Can I configure HSQLDB to be used on disk? If this is not a good approach,
can I spin up MySQL in its place?
Sorry if this has asked before.
Thanks,
Matthew Vita
www.matthewvita.com
ker): *tcp://:61616 mainQueue -d desc/localDeploymentDescriptor.xml -c
desc/FilesInDirectoryCollectionReader.xml -o xmis/*
Thanks,
Matthew Vita
www.matthewvita.com
pically used to just
ICD10 and won't understand the other coding schemas. Can you provide
details on improving the ICD10 dictionary concept matches? In the worst
case scenario, can I update the dictionary by hand to improve certain
common concept matches?
Thanks,
Matthew Vita
www.matthewvita.com
y best to improve the
documentation for others.
Thanks,
Matthew Vita
www.matthewvita.com
-as-pipeline/Dockerfile
is
what I will be using to pull it in), but I'm pretty sure I am on the right
track! Please let me know if I've missed anything.
Thanks,
Matthew Vita
www.matthewvita.com
On Mon, Aug 28, 2017 at 8:48 AM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> H
o download and configure a custom UMLS dataset installation. This is
correct?
Thanks,
Matthew Vita
www.matthewvita.com
On Sun, Aug 27, 2017 at 9:05 PM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi Matthew,
>
> One of the updates that happened with ctakes 4.0 was the lon
Hi cTAKES Maintainers,
My name is Matthew Vita, a healthcare software developer and one of the
OpenEMR project administrators (this is a popular open source EHR mainly
used outside of the US).
I am interested in integrating cTAKES with the EMR using Docker and a
friendly web frontend
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