Hi James,
I've checked in a descriptor for the UmlsOverlapLookupAnnotator in fast/desc/ .
I also checked in a modification for the CuisOnlyPlaintextUMLSProcessor.xml
with the Overlap annotator commented out as an option:
As an example of i
Hi James,
Great question. In truth, you may need to run a few times to find out. Doing
that with a full pipeline would be tedious, but there is a descriptor in
clinical-pipeline named CuisOnlyPlaintextUMLSProcessor.xml that will only
obtain Umls cuis. It runs ~50,000 notes per hour on my lapt
