[jira] [Commented] (GIRAPH-1103) Another try to fix jobs getting stuck after channel failure

[Hudson (JIRA)]

[ 
https://issues.apache.org/jira/browse/GIRAPH-1103?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15437835#comment-15437835
 ] 

Hudson commented on GIRAPH-1103:


FAILURE: Integrated in Jenkins build Giraph-trunk-Commit #1654 (See 
[https://builds.apache.org/job/Giraph-trunk-Commit/1654/])
GIRAPH-1103: Another try to fix jobs getting stuck after channel failure 
(majakabiljo: 
[http://git-wip-us.apache.org/repos/asf?p=giraph.git=commit=a15675cae4c91d0fe0496a879de4242ffbc5f9ce])
* (edit) giraph-core/src/main/java/org/apache/giraph/utils/JMapHistoDumper.java
* (edit) 
giraph-core/src/main/java/org/apache/giraph/utils/ReactiveJMapHistoDumper.java
* (edit) giraph-core/src/main/java/org/apache/giraph/worker/MemoryObserver.java
* (edit) 
giraph-core/src/main/java/org/apache/giraph/zk/InProcessZooKeeperRunner.java
* (edit) giraph-core/src/main/java/org/apache/giraph/utils/ThreadUtils.java
* (edit) giraph-core/src/main/java/org/apache/giraph/comm/netty/NettyClient.java
* (edit) 
giraph-core/src/main/java/org/apache/giraph/job/DefaultJobProgressTrackerService.java
* (edit) 
giraph-core/src/main/java/org/apache/giraph/worker/WorkerProgressWriter.java


> Another try to fix jobs getting stuck after channel failure
> ---
>
> Key: GIRAPH-1103
> URL: https://issues.apache.org/jira/browse/GIRAPH-1103
> Project: Giraph
>  Issue Type: Bug
>Reporter: Maja Kabiljo
>Assignee: Maja Kabiljo
>
> With GIRAPH-1087 we see jobs stuck after channel failure less often, but it 
> still happens. There are several additional issues I found: requests failing 
> to send at the first place so they never get retried, callbacks for channel 
> failures not being triggered always.



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[jira] [Commented] (GIRAPH-1094) Fix TestHBaseRootMarkerVertextFormat.testHBaseInputOutput

[Sergey Edunov (JIRA)]

[ 
https://issues.apache.org/jira/browse/GIRAPH-1094?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15437665#comment-15437665
 ] 

Sergey Edunov commented on GIRAPH-1094:
---

This bug is known:

http://stackoverflow.com/questions/17625938/hbase-minidfscluster-java-fails-in-certain-environments
it's caused by HDFS issue:
https://issues.apache.org/jira/browse/HDFS-2556

It doesn't really affect Giraph in runtime, so I think we shouldn't block the 
release. 

> Fix TestHBaseRootMarkerVertextFormat.testHBaseInputOutput
> -
>
> Key: GIRAPH-1094
> URL: https://issues.apache.org/jira/browse/GIRAPH-1094
> Project: Giraph
>  Issue Type: Bug
>Affects Versions: 1.2.0
>Reporter: Sergey Edunov
>Assignee: Roman Shaposhnik
>
> This test case seems to fail because of a missing dependency. 
> 16/07/13 22:31:50 ERROR master.MasterFileSystem: bootstrap
> org.apache.hadoop.hbase.DroppedSnapshotException: region: -ROOT-,,0
>   at 
> org.apache.hadoop.hbase.regionserver.HRegion.internalFlushcache(HRegion.java:1684)
>   at 
> org.apache.hadoop.hbase.regionserver.HRegion.internalFlushcache(HRegion.java:1552)
>   at 
> org.apache.hadoop.hbase.regionserver.HRegion.doClose(HRegion.java:1047)
>   at org.apache.hadoop.hbase.regionserver.HRegion.close(HRegion.java:995)
>   at org.apache.hadoop.hbase.regionserver.HRegion.close(HRegion.java:960)
>   at 
> org.apache.hadoop.hbase.master.MasterFileSystem.bootstrap(MasterFileSystem.java:523)
>   at 
> org.apache.hadoop.hbase.master.MasterFileSystem.checkRootDir(MasterFileSystem.java:463)
>   at 
> org.apache.hadoop.hbase.master.MasterFileSystem.createInitialFileSystemLayout(MasterFileSystem.java:148)
>   at 
> org.apache.hadoop.hbase.master.MasterFileSystem.(MasterFileSystem.java:133)
>   at 
> org.apache.hadoop.hbase.master.HMaster.finishInitialization(HMaster.java:573)
>   at org.apache.hadoop.hbase.master.HMaster.run(HMaster.java:432)
>   at java.lang.Thread.run(Thread.java:745)
> Caused by: java.lang.NoClassDefFoundError: 
> com/google/common/io/NullOutputStream
>   at 
> org.apache.hadoop.hbase.io.hfile.HFileWriterV2.close(HFileWriterV2.java:375)
>   at 
> org.apache.hadoop.hbase.regionserver.StoreFile$Writer.close(StoreFile.java:1330)
>   at 
> org.apache.hadoop.hbase.regionserver.Store.internalFlushCache(Store.java:913)
>   at org.apache.hadoop.hbase.regionserver.Store.flushCache(Store.java:794)
>   at 
> org.apache.hadoop.hbase.regionserver.Store$StoreFlusherImpl.flushCache(Store.java:2429)
>   at 
> org.apache.hadoop.hbase.regionserver.HRegion.internalFlushcache(HRegion.java:1659)
> Full log can be found here:
> https://builds.apache.org/job/Giraph-1.2/5/MVN_PROFILE=hadoop_1,jdk=JDK%201.7%20(latest),label=ubuntu/testReport/junit/org.apache.giraph.io.hbase/TestHBaseRootMarkerVertextFormat/testHBaseInputOutput/



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