RE: default clinical pipeline: questions about polarity [EXTERNAL]

2017-08-08 Thread Finan, Sean
Hi Chris, Sounds good. Sean -Original Message- From: Chris Hinkle [mailto:hin...@all-turtles.com] Sent: Tuesday, August 08, 2017 6:44 PM To: dev@ctakes.apache.org Subject: Re: default clinical pipeline: questions about polarity [EXTERNAL] Thanks Sean, I was able to achieve what I

Re: default clinical pipeline: questions about polarity [EXTERNAL]

2017-08-08 Thread Chris Hinkle
Thanks Sean, I was able to achieve what I wanted by adding the ContextAnnotator to the default clinical pipeline like so: public class Pipeline { public static AggregateBuilder getAggregateBuilder( ) throws Exception { AggregateBuilder builder = new AggregateBuilder( ); buil

RE: default clinical pipeline: questions about polarity [EXTERNAL]

2017-08-08 Thread Finan, Sean
Hi Chris, No, you are not missing anything. The example on the wiki was concocted to display what ctakes should do. There are a few different negation modules (and you can write your own). Using the Assertion module you will not get negated lesions. Using the ContextAnnotator you will. I d