Andreas Weise created ZEPPELIN-1453:
---------------------------------------
Summary: Spark Interpreter Isolation "scoped" - Classloading Issues
Key: ZEPPELIN-1453
URL: https://issues.apache.org/jira/browse/ZEPPELIN-1453
Project: Zeppelin
Issue Type: Bug
Affects Versions: 0.6.1
Reporter: Andreas Weise
There seem to be classloader issues, when using Spark Interpreter with "scoped"
Isolation, causing Issues like:
1)
org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in
stage 4.0 failed 4 times, most recent failure: Lost task 1.3 in stage 4.0 (TID
25, 127.0.0.1): java.lang.ClassCastException: cannot assign instance of
scala.collection.immutable.List$SerializationProxy to field
org.apache.spark.rdd.RDD.org$apache$spark$rdd$RDD$$dependencies_ of type
scala.collection.Seq in instance of org.apache.spark.rdd.MapPartitionsRDD
2)
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in
stage 5.0 failed 4 times, most recent failure: Lost task 0.3 in stage 5.0 (TID
40, 172.16.56.135): java.lang.ClassNotFoundException: $anonfun$1
Can be reproduced with two Notebooks:
Notebook A)
Paragraph for Issue 1)
val rdd = sc.parallelize(Array(Array("foo1", "foo2"), Array("bar1", "bar2")))
val sorted_rdd = rdd.sortBy(_(1))
Paragraph for Issue 2)
val rdd = sc.parallelize(Array("foo", "bar"))
val map = rdd.map(_ + "test")
map.collect()
Notebook B) (logically the same as A)
Paragraph for Issue 1)
val rdd2 = sc.parallelize(Array(Array("foo1", "foo2"), Array("bar1", "bar2")))
val sorted_rdd2 = rdd2.sortBy(_(1))
Paragraph for Issue 2)
val rdd2 = sc.parallelize(Array("foo", "bar"))
val map2 = rdd2.map(_ + "test")
map.collect()
When running both with "shared" >> ALL GOOD
When running both with "scoped" >> Errors on the second Notebook.
Full Stack traces
1)
rdd2: org.apache.spark.rdd.RDD[Array[String]] = ParallelCollectionRDD[16] at
parallelize at <console>:27
org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in
stage 4.0 failed 4 times, most recent failure: Lost task 1.3 in stage 4.0 (TID
25, 172.16.56.135): java.lang.ClassCastException: cannot assign instance of
scala.collection.immutable.List$SerializationProxy to field
org.apache.spark.rdd.RDD.org$apache$spark$rdd$RDD$$dependencies_ of type
scala.collection.Seq in instance of org.apache.spark.rdd.MapPartitionsRDD
at
java.io.ObjectStreamClass$FieldReflector.setObjFieldValues(ObjectStreamClass.java:2089)
at
java.io.ObjectStreamClass.setObjFieldValues(ObjectStreamClass.java:1261)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1999)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
scala.collection.immutable.List$SerializationProxy.readObject(List.scala:479)
at sun.reflect.GeneratedMethodAccessor5.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:85)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Driver stacktrace:
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1450)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1438)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1437)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1437)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811)
at scala.Option.foreach(Option.scala:257)
at
org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:811)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1659)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1618)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1607)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:632)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1871)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1884)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1897)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1911)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:893)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:358)
at org.apache.spark.rdd.RDD.collect(RDD.scala:892)
at org.apache.spark.RangePartitioner$.sketch(Partitioner.scala:264)
at org.apache.spark.RangePartitioner.<init>(Partitioner.scala:126)
at
org.apache.spark.rdd.OrderedRDDFunctions$$anonfun$sortByKey$1.apply(OrderedRDDFunctions.scala:62)
at
org.apache.spark.rdd.OrderedRDDFunctions$$anonfun$sortByKey$1.apply(OrderedRDDFunctions.scala:61)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:358)
at
org.apache.spark.rdd.OrderedRDDFunctions.sortByKey(OrderedRDDFunctions.scala:61)
at org.apache.spark.rdd.RDD$$anonfun$sortBy$1.apply(RDD.scala:596)
at org.apache.spark.rdd.RDD$$anonfun$sortBy$1.apply(RDD.scala:597)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:358)
at org.apache.spark.rdd.RDD.sortBy(RDD.scala:594)
... 46 elided
Caused by: java.lang.ClassCastException: cannot assign instance of
scala.collection.immutable.List$SerializationProxy to field
org.apache.spark.rdd.RDD.org$apache$spark$rdd$RDD$$dependencies_ of type
scala.collection.Seq in instance of org.apache.spark.rdd.MapPartitionsRDD
at
java.io.ObjectStreamClass$FieldReflector.setObjFieldValues(ObjectStreamClass.java:2089)
at java.io.ObjectStreamClass.setObjFieldValues(ObjectStreamClass.java:1261)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1999)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
scala.collection.immutable.List$SerializationProxy.readObject(List.scala:479)
at sun.reflect.GeneratedMethodAccessor5.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject
0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:85)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
... 3 more
2)
rdd2: org.apache.spark.rdd.RDD[String] = ParallelCollectionRDD[20] at
parallelize at <console>:27
map2: org.apache.spark.rdd.RDD[String] = MapPartitionsRDD[21] at map at
<console>:29
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in
stage 5.0 failed 4 times, most recent failure: Lost task 0.3 in stage 5.0 (TID
40, 172.16.56.135): java.lang.ClassNotFoundException: $anonfun$1
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:82)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at
org.apache.spark.serializer.JavaDeserializationStream$$anon$1.resolveClass(JavaSerializer.scala:67)
at
java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1613)
at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1518)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1774)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:85)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ClassNotFoundException: $anonfun$1
at java.lang.ClassLoader.findClass(ClassLoader.java:530)
at
org.apache.spark.util.ParentClassLoader.findClass(ParentClassLoader.scala:26)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:34)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:30)
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:77)
... 30 more
Driver stacktrace:
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1450)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1438)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1437)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1437)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811)
at scala.Option.foreach(Option.scala:257)
at
org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:811)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1659)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1618)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1607)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:632)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1871)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1884)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1897)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1911)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:893)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:358)
at org.apache.spark.rdd.RDD.collect(RDD.scala:892)
... 46 elided
Caused by: java.lang.ClassNotFoundException: $anonfun$1
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:82)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at
org.apache.spark.serializer.JavaDeserializationStream$$anon$1.resolveClass(JavaSerializer.scala:67)
at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1613)
at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1518)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1774)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:75)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:114)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:85)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
... 3 more
Caused by: java.lang.ClassNotFoundException: $anonfun$1
at java.lang.ClassLoader.findClass(ClassLoader.java:530)
at
org.apache.spark.util.ParentClassLoader.findClass(ParentClassLoader.scala:26)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:34)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at
org.apache.spark.util.ParentClassLoader.loadClass(ParentClassLoader.scala:30)
at
org.apache.spark.repl.ExecutorClassLoader.findClass(ExecutorClassLoader.scala:77)
... 30 more
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