[hwloc-devel] Create success (hwloc r1.1.1a1r3093)

2011-01-18 Thread MPI Team
Creating nightly hwloc snapshot SVN tarball was a success. Snapshot: hwloc 1.1.1a1r3093 Start time: Tue Jan 18 21:03:34 EST 2011 End time: Tue Jan 18 21:06:01 EST 2011 Your friendly daemon, Cyrador

Re: [hwloc-devel] [hwloc-svn] svn:hwloc r3046

2011-01-18 Thread Jeff Squyres
Thanks for fixing it up! On Jan 18, 2011, at 6:13 PM, Samuel Thibault wrote: > Jeff Squyres, le Tue 18 Jan 2011 20:00:42 +0100, a écrit : >> On Jan 12, 2011, at 10:10 AM, Samuel Thibault wrote: >>> This is not what I meant: hwloc_alloc_membind_policy's purpose is only >>> to allocate bound

Re: [hwloc-devel] [hwloc-svn] svn:hwloc r3046

2011-01-18 Thread Samuel Thibault
Jeff Squyres, le Tue 18 Jan 2011 20:00:42 +0100, a écrit : > On Jan 12, 2011, at 10:10 AM, Samuel Thibault wrote: > > This is not what I meant: hwloc_alloc_membind_policy's purpose is only > > to allocate bound memory. It happens that hwloc_alloc_membind_policy > > _may_ change the process policy

Re: [hwloc-devel] [hwloc-svn] svn:hwloc r3046

2011-01-18 Thread Jeff Squyres
I took the liberty of committing this in r3090. On Jan 18, 2011, at 2:00 PM, Jeff Squyres wrote: > On Jan 12, 2011, at 10:10 AM, Samuel Thibault wrote: > >> This is not what I meant: hwloc_alloc_membind_policy's purpose is only >> to allocate bound memory. It happens that

Re: [hwloc-devel] bug in hwloc 1.1 hwloc_get_membind_nodeset on Linux

2011-01-18 Thread Brice Goglin
Le 18/01/2011 19:38, Bernd Kallies a écrit : > max_os_index = 512, HWLOC_BITS_PER_LONG = 64, rounding gives > max_os_index = 576. > > I also saw the same behaviour on a much smaller machine (usual 2-socket > Nehalem-EP). CONFIG_NODES_SHIFT is not found in /proc/config.gz. > max_os_index = 64,

Re: [hwloc-devel] [hwloc-svn] svn:hwloc r3046

2011-01-18 Thread Jeff Squyres
On Jan 12, 2011, at 10:10 AM, Samuel Thibault wrote: > This is not what I meant: hwloc_alloc_membind_policy's purpose is only > to allocate bound memory. It happens that hwloc_alloc_membind_policy > _may_ change the process policy in order to be able to bind memory > at all (when the underlying

Re: [hwloc-devel] bug in hwloc 1.1 hwloc_get_membind_nodeset on Linux

2011-01-18 Thread Bernd Kallies
On Tue, 2011-01-18 at 19:11 +0100, Brice Goglin wrote: > Le 18/01/2011 17:40, Bernd Kallies a écrit : > > Hallo, > > > > I'm using hwloc-1.1 on Linux 2.6.32.19 (x86_64) on a machine that has > > several NUMA nodes. It seems to me that there are unwanted bits left in > > the nodeset "set", when

Re: [hwloc-devel] bug in hwloc 1.1 hwloc_get_membind_nodeset on Linux

2011-01-18 Thread Brice Goglin
Le 18/01/2011 17:40, Bernd Kallies a écrit : > Hallo, > > I'm using hwloc-1.1 on Linux 2.6.32.19 (x86_64) on a machine that has > several NUMA nodes. It seems to me that there are unwanted bits left in > the nodeset "set", when calling hwloc_get_membind_nodeset(topo, > set, ...) after a successful

[hwloc-devel] bug in hwloc 1.1 hwloc_get_membind_nodeset on Linux

2011-01-18 Thread Bernd Kallies
Hallo, I'm using hwloc-1.1 on Linux 2.6.32.19 (x86_64) on a machine that has several NUMA nodes. It seems to me that there are unwanted bits left in the nodeset "set", when calling hwloc_get_membind_nodeset(topo, set, ...) after a successful hwloc_set_membind() or hwloc_set_membind_nodeset().

[OMPI devel] Forgot to mention on the call...

2011-01-18 Thread Jeff Squyres
As previously discussed, Ralph is stepping back from being the v1.4 GK because of other time commitments. I was reminded that I was the backup 1.4 GK, so I'll be stepping in. -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to:

[OMPI devel] New ROMIO

2011-01-18 Thread Jeff Squyres
Pascal's HG tree looks good to me. https://bitbucket.org/devezep/new-romio-for-openmpi I think it should be committed back to the SVN trunk for more wide-spread testing (e.g., on non-NFS filesystems -- I don't have any parallel filesystems). -- Jeff Squyres jsquy...@cisco.com For

Re: [OMPI devel] RFC: Bring the lastest ROMIO version from MPICH2-1.3 into the trunk

2011-01-18 Thread Jeff Squyres
On Jan 18, 2011, at 9:31 AM, Jeff Squyres wrote: > It looks like you manually updated the hg repo to be v1.5, so I guess we can > go from there (i.e., I'll review and send feedback). But in the future, you > might want to try the above procedures, instead. Wrong -- you updated it to the SVN

Re: [OMPI devel] RFC: Bring the lastest ROMIO version from MPICH2-1.3 into the trunk

2011-01-18 Thread Jeff Squyres
IMHO, it's (much) easier to get an SVN checkout of the tree you're trying to sync with and then follow the procedures on that wiki page for SVN + Mercurial interaction. This allows two things: 1. You can easily stay up-to-date with SVN changes, even on release branches. 2. You can

Re: [OMPI devel] RFC: Bring the lastest ROMIO version from MPICH2-1.3 into the trunk

2011-01-18 Thread Jeff Squyres
Hmm. That looks like a merge gone bad; I'm not sure what happened there. It could well be an artifact of traversing from 1.5 to 1.4, or something like that. I would not re-remove these files. On Jan 17, 2011, at 11:11 AM, Pascal Deveze wrote: > Jeff, > > You removed the following files

Re: [OMPI devel] OMPI 1.4.3 hangs in gather

2011-01-18 Thread Terry Dontje
On 01/18/2011 07:48 AM, Jeff Squyres wrote: > IBCM is broken and disabled (has been for a long time). > > Did you mean RDMACM? > > No I think I meant OMPI oob. sorry, -- Oracle Terry D. Dontje | Principal Software Engineer Developer Tools Engineering | +1.781.442.2631 Oracle *- Performance

Re: [OMPI devel] OMPI 1.4.3 hangs in gather

2011-01-18 Thread Jeff Squyres
+1. I'm afraid I don't know why offhand there would be such differences. I'm thinking that you'll need to dive a little deeper to figure it out; sorry. :-( On Jan 16, 2011, at 10:54 AM, Shamis, Pavel wrote: > Well, then I would suspect rdmacm vs oob QP configuration. They supposed to > be

Re: [OMPI devel] OMPI 1.4.3 hangs in gather

2011-01-18 Thread Jeff Squyres
IBCM is broken and disabled (has been for a long time). Did you mean RDMACM? On Jan 18, 2011, at 6:22 AM, Terry Dontje wrote: > Could the issue have anything to do with the how OMPI implements lazy > connections with IBCM? Does setting the mca parameter mpi_preconnect_all to > 1 change

Re: [hwloc-devel] python bindings

2011-01-18 Thread Jeff Squyres
Are the abstractions anything like Bernd's perl bindings, perchance? http://search.cpan.org/~bka/ On Jan 17, 2011, at 3:02 PM, Guy Streeter wrote: > I am currently working to get a public git repository set up so that I can > share the work. In the meantime, my first pass at python

Re: [OMPI devel] OMPI 1.4.3 hangs in gather

2011-01-18 Thread Terry Dontje
Could the issue have anything to do with the how OMPI implements lazy connections with IBCM? Does setting the mca parameter mpi_preconnect_all to 1 change things? --td On 01/16/2011 04:12 AM, Doron Shoham wrote: Hi, The gather hangs only in liner_sync algorithm but works with basic_linear