Re: [hwloc-devel] PCI device name question

2012-03-22 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 21/03/12 08:07, Brice Goglin wrote: > New patch attached, it doesn't add port numbers for non-IB > devices. Extract from lstopo on SGI XE270 box with Mellanox dual port IB card: PCIBridge PCI 15b3:673c Net L#2 "ib1" Net

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Paul H. Hargrove
From the same machine that Dan is using: {hargrove@cetuslac1 ~}$ mpicc -v mpicc for MPICH2 version 1.4.1p1 [...hairy details omitted...] gcc version 4.4.6 (BGQ-dev-120305) -Paul On 3/22/2012 7:43 PM, Christopher Samuel wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/03/12 20:58,

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/03/12 20:58, Brice Goglin wrote: > So there's something strange going on when MPI is added. Which MPI > are using? Is this a derivative of MPICH that embeds hwloc? (MPICH > >= 1.2.1 if I remember correctly) Not sure about BG/Q, but BG/P uses

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Christopher Samuel
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 22/03/12 01:08, Daniel Ibanez wrote: > Attached is the stderr and stdout from lstopo compiled as you > said. Interesting, so it's not correctly detecting the topology as BG/Q is 16 compute cores, each with 4 hardware threads. Instead it's

[hwloc-devel] Create success (hwloc r1.4.2a1r4420)

2012-03-22 Thread MPI Team
Creating nightly hwloc snapshot SVN tarball was a success. Snapshot: hwloc 1.4.2a1r4420 Start time: Thu Mar 22 21:04:20 EDT 2012 End time: Thu Mar 22 21:07:07 EDT 2012 Your friendly daemon, Cyrador

[hwloc-devel] Create success (hwloc r1.5a1r4418)

2012-03-22 Thread MPI Team
Creating nightly hwloc snapshot SVN tarball was a success. Snapshot: hwloc 1.5a1r4418 Start time: Thu Mar 22 21:01:01 EDT 2012 End time: Thu Mar 22 21:04:20 EDT 2012 Your friendly daemon, Cyrador

Re: [OMPI devel] [OMPI svn] svn:open-mpi r26180

2012-03-22 Thread Ralph Castain
Thanks! On Mar 22, 2012, at 6:12 PM, Jeffrey Squyres wrote: >> From the context of the code, I'm assuming it's supposed to be MPI_SOURCE. >> I'll commit shortly. > > > On Mar 22, 2012, at 7:54 PM, Ralph Castain wrote: > >> Yo Brian >> >> I believe you have an error in this commit: >> >>

[OMPI devel] Clam AntiVirus

2012-03-22 Thread Larry Baker
I was reading the FAQs for the ClamAV anti-virus program (included on Mac OS X) at http://www.clamav.net/lang/en/faq/faq-upgrade/. At the end is a note that caught my eye about problem compilers. ClamAV supports a wide variety of compilers, hardware and operating systems. Our core

Re: [OMPI devel] [OMPI svn] svn:open-mpi r26180

2012-03-22 Thread Jeffrey Squyres
>From the context of the code, I'm assuming it's supposed to be MPI_SOURCE. >I'll commit shortly. On Mar 22, 2012, at 7:54 PM, Ralph Castain wrote: > Yo Brian > > I believe you have an error in this commit: > > pml_ob1_iprobe.c:113: error: 'ompi_status_public_t' has no member named >

Re: [OMPI devel] [OMPI svn] svn:open-mpi r26180

2012-03-22 Thread Ralph Castain
Yo Brian I believe you have an error in this commit: pml_ob1_iprobe.c:113: error: 'ompi_status_public_t' has no member named 'MPI_STATUS' I checked the definition of that struct, and the error is correct - there is no such member. What should it be? Ralph On Mar 22, 2012, at 4:55 PM,

Re: [hwloc-devel] Fwd: BGQ empty topology with MPI

2012-03-22 Thread Brice Goglin
Le 22/03/2012 23:33, Daniel Ibanez a écrit : > I've run this test before (didnt keep the results but can run it again). > I got debug output and compared it with the output from a hwloc test > executable > and I noticed that my program did not show any PU objects were discovered. > In my program

Re: [hwloc-devel] Fwd: BGQ empty topology with MPI

2012-03-22 Thread Daniel Ibanez
I've run this test before (didnt keep the results but can run it again). I got debug output and compared it with the output from a hwloc test executable and I noticed that my program did not show any PU objects were discovered. In my program the first discovered topology is just a Machine object,

Re: [hwloc-devel] Fwd: BGQ empty topology with MPI

2012-03-22 Thread Brice Goglin
Le 22/03/2012 23:07, Daniel Ibanez a écrit : > > I suspected this might be the reason, so I called "nm" > with the static versions of the libraries their compiler wrappers > link against and I could not find the term "hwloc" in the output. > Is this a valid test? If your hwloc is still compiled

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Samuel Thibault
Daniel Ibanez, le Thu 22 Mar 2012 23:07:01 +0100, a écrit : > I suspected this might be the reason, so I called "nm" > with the static versions of the libraries their compiler wrappers > link against and I could not find the term "hwloc" in the output. > Is this a valid test? Ah, right, embedded

Re: [OMPI devel] RFC: change default for tuned alltoallv to pairwise

2012-03-22 Thread Nathan Hjelm
On Thu, 22 Mar 2012, Shamis, Pavel wrote: What: Change coll tuned default to pairwise exchange Why: The linear algorithm does not scale to any reasonable number of PEs When: Timeout in 2 days (Fri) Is there any reason the default should not be changed? Nathan, I can see why people

Re: [OMPI devel] RFC: change default for tuned alltoallv to pairwise

2012-03-22 Thread Shamis, Pavel
> >> What: Change coll tuned default to pairwise exchange >> >> Why: The linear algorithm does not scale to any reasonable number of PEs >> >> When: Timeout in 2 days (Fri) >> >> Is there any reason the default should not be changed? > > Nathan, > > I can see why people think the linear

Re: [OMPI devel] RFC: change default for tuned alltoallv to pairwise

2012-03-22 Thread George Bosilca
On Mar 21, 2012, at 12:14 , Nathan Hjelm wrote: > What: Change coll tuned default to pairwise exchange > > Why: The linear algorithm does not scale to any reasonable number of PEs > > When: Timeout in 2 days (Fri) > > Is there any reason the default should not be changed? Nathan, I can see

Re: [OMPI devel] MPI_Init_thread problem on ubuntu ARM (open-mpi 1.4.3)

2012-03-22 Thread Jeffrey Squyres
We did not support ARM until Open MPI 1.5.x. On Mar 21, 2012, at 7:07 AM, Juan Solano wrote: > > Hello, > > I have a problem using Open MPI on my linux system (pandaboard running > Ubuntu precise). A call to MPI_Init_thread with the following parameters > hangs: > > MPI_Init_thread(0, 0,

Re: [OMPI devel] [OMPI svn-full] svn:open-mpi r26172

2012-03-22 Thread George Bosilca
Thanks Josh. george. On Mar 22, 2012, at 10:09 , Josh Hursey wrote: > Should be fixed in r26177. > > On Thu, Mar 22, 2012 at 7:51 AM, Josh Hursey wrote: >> Fair enough. Upon further inspection of the request_invoke() handler, >> you are correct that it is not required

Re: [OMPI devel] [OMPI svn-full] svn:open-mpi r26172

2012-03-22 Thread Josh Hursey
Should be fixed in r26177. On Thu, Mar 22, 2012 at 7:51 AM, Josh Hursey wrote: > Fair enough. Upon further inspection of the request_invoke() handler, > you are correct that it is not required here if we do not modify the > default value for req_status.MPI_ERROR. > > I'll

Re: [OMPI devel] [OMPI svn-full] svn:open-mpi r26172

2012-03-22 Thread Josh Hursey
Fair enough. Upon further inspection of the request_invoke() handler, you are correct that it is not required here if we do not modify the default value for req_status.MPI_ERROR. I'll work on a revised patch this morning and commit. One that does not use this field. Per your comment from your

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Samuel Thibault
Brice Goglin, le Thu 22 Mar 2012 10:58:46 +0100, a écrit : > I don't see anything bad in your outputs. > So there's something strange going on when MPI is added. Which MPI are using? > Is this a derivative of MPICH that embeds hwloc? (MPICH >= 1.2.1 if I remember > correctly) There might be

Re: [hwloc-devel] BGQ empty topology with MPI

2012-03-22 Thread Brice Goglin
I don't see anything bad in your outputs. So there's something strange going on when MPI is added. Which MPI are using? Is this a derivative of MPICH that embeds hwloc? (MPICH >= 1.2.1 if I remember correctly) Brice Le 21/03/2012 15:08, Daniel Ibanez a écrit : > Attached is the stderr and

Re: [OMPI devel] [OMPI svn-full] svn:open-mpi r26172

2012-03-22 Thread George Bosilca
On Mar 21, 2012, at 15:13 , Josh Hursey wrote: > I see your point about setting MPI_ERR_PENDING on the internal status > versus the status returned by MPI_Waitall. As I mentioned, the reason > I choose to do that is to support the ompi_errhandler_request_invoke() > function. I could not think of