[OMPI devel] use of stat() during malloc initialization

2013-01-09 Thread Phil Carns
Hi, I am a developer on the Darshan project (http://www.mcs.anl.gov/darshan), which provides a set of lightweight wrappers to characterize the I/O access patterns of MPI applications. Darshan can operate on static or dynamic executables. As you might expect, it uses the LD_PRELOAD mechanism

[OMPI devel] New SM BTL Initialization Take 2

2013-01-09 Thread Gutierrez, Samuel K
Hi all, I've reworked the SM BTL initialization to address some of the concerns voiced last week. The update is pretty simple and like last week's change does not use RML for initialization. Short Description of Change: All local ranks agree upon a well-known rendezvous point during component i

Re: [OMPI devel] use of stat() during malloc initialization

2013-01-09 Thread Jeff Squyres (jsquyres)
Greetings Phil. Good analysis. You can thank OFED for this horribleness, BTW. :-) Since OFED hardware requires memory registration, and since that registration is expensive, MPI implementations cache registered memory to alleviate the re-registration costs for repeated memory usage. But MPI

Re: [OMPI devel] "Open MPI"-based MPI library used by K computer

2013-01-09 Thread Rayson Ho
Hi Ralph, Since the whole journal is available online, and is reachable by Google, I don't believe we can get into copyright issues by providing a link to it (but then, I also know that there are countries that have more crazy web page linking rules!). http://www.fujitsu.com/global/news/publicati

[OMPI devel] Build open MPI

2013-01-09 Thread Ding, Boxiong
Hi, I am trying to build the code that Ralph has put here: https://boxd...@bitbucket.org/rhc/hdmon, but failed. It is a modified open MPI code. Can someone help? [root@aesaroyp1d1c hdmon]# cat /etc/redhat-release Red Hat Enterprise Linux Server release 6.1 (Santiago) I have manually installed

Re: [OMPI devel] Build open MPI

2013-01-09 Thread Ralph Castain
I'm pretty sure we are at autoconf 2.69 now. You might want to upgrade it, and ensure your m4 is correspondingly updated. Also, automake should probably be at 1.12.x (avoid 1.13,x as it has bugs). I think libtool looks pretty old too. Sent from my iPad On Jan 9, 2013, at 5:37 PM, "Ding, Boxiong

Re: [OMPI devel] [OMPI users] Backward Compatibility of MPI Java Binding

2013-01-09 Thread Yoshiki SATO
Thanks for your suggestion. I resend my question here. > it's just something that happened over time (our methodology is that we > branch away from the main development trunk and then only selectively apply > patches from the main trunk to the release branch over time). The 1.7's Java implemen