Re: [OMPI devel] VT compile error: Fwd: [ofa-general] OFED 1.4.1 (rc1) is available

2009-03-09 Thread Matthias Jurenz 
Unfortunately, I have no write access to the OFED bugzilla, so I answer
to the OMPI devel list...


It sounds like the following issue that we had early January:

http://www.open-mpi.org/community/lists/devel/2009/01/5102.php

The bottom line was that we don't know what's wrong.
However, there are these workarounds to solve this problem:

- setting 'use_default_rpm_opt_flags' to 0
- adding configure option '--with-contrib-vt-flags=--disable-iotrace'


Matthias

On Thu, 2009-03-05 at 16:43 +0200, Pavel Shamis (Pasha) wrote:
> Adding pointer to OFED bugzilla ticket for more information: 
> https://bugs.openfabrics.org/show_bug.cgi?id=1537
> 
> Jeff Squyres wrote:
> > VT guys --
> >
> > It looks like we still have a compile bug in OMPI 1.3.1rc4...  See below.
> >
> > Do you think you can get a fix ASAP for OMPI 1.3.1final?
> >
> >
> > Begin forwarded message:
> >
> >> *From: *"PN" >
> >> *Date: *March 5, 2009 12:51:28 AM EST
> >> *To: *"Tziporet Koren"  >> >
> >> *Cc: *>, 
> >> >
> >> *Subject:** Re: [ofa-general] OFED 1.4.1 is available*
> >>
> >> HI,
> >>
> >> I have a build error of OFED-1.4.1-rc1 under CentOS 5.2:
> >>
> >> .
> >> Build openmpi_gcc RPM
> >> Running  rpmbuild --rebuild  --define '_topdir /var/tmp/OFED_topdir' 
> >> --define 'dist %{nil}' --target x86_64 --define '_name openmpi_gcc' 
> >> --define 'mpi_selector /usr/bin/mpi-selector' --define 
> >> 'use_mpi_selector 1' --define 'install_shell_scripts 1' --define 
> >> 'shell_scripts_basename mpivars' --define '_usr /usr' --define 'ofed 
> >> 0' --define '_prefix /usr/mpi/gcc/openmpi-1.3.1rc4' --define 
> >> '_defaultdocdir /usr/mpi/gcc/openmpi-1.3.1rc4' --define '_mandir 
> >> %{_prefix}/share/man' --define 'mflags -j 4' --define 
> >> 'configure_options   --with-openib=/usr 
> >> --with-openib-libdir=/usr/lib64  CC=gcc CXX=g++ F77=gfortran 
> >> FC=gfortran --enable-mpirun-prefix-by-default' --define 
> >> 'use_default_rpm_opt_flags 1' 
> >> /opt/software/packages/ofed/OFED-1.4.1-rc1/OFED-1.4.1-rc1/SRPMS/openmpi-1.3.1rc4-1.src.rpm
> >> Failed to build openmpi RPM
> >> See /tmp/OFED.28377.logs/openmpi.rpmbuild.log
> >>
> >>
> >> In /tmp/OFED.28377.logs/openmpi.rpmbuild.log:
> >> .
> >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib 
> >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE 
> >> -DBINDIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/bin\" 
> >> -DDATADIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  -DVT_MEMHOOK 
> >> -DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 
> >> -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT 
> >> vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o 
> >> vt_iowrap_helper.o vt_iowrap_helper.c
> >> mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po
> >> gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib 
> >> -I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE 
> >> -DBINDIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/bin\" 
> >> -DDATADIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  -DVT_MEMHOOK 
> >> -DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 
> >> -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT 
> >> rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o rfg_regions.o 
> >> rfg_regions.c
> >> vt_iowrap.c:1242: error: expected declaration specifiers or '...' 
> >> before numeric constant
> >> vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk'
> >> mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po
> >> make[5]: *** [vt_iowrap.o] Error 1
> >> make[5]: *** Waiting for unfinished jobs
> >> mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po
> >> mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po
> >> make[5]: Leaving directory 
> >> `/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt/vtlib'
> >> make[4]: *** [all-recursive] Error 1
> >> make[4]: Leaving directory 
> >> `/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'
> >> make[3]: *** [all] Error 2
> >> make[3]: Leaving directory 
> >> `/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'
> >> make[2]: *** [all-recursive] Error 1
> >> make[2]: Leaving directory 
> >> `/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt'
> >> make[1]: *** [all-recursive] Error 1
> >> make[1]: Leaving directory 
> >> `/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi'
> >> make: *** [all-recursive] Error 1
> >> error: Bad exit status from /var/tmp/rpm-tmp.40739 (%build)
> >>
> >>
> >> RPM build errors:
> >> user jsquyres does not exist - using root
> >> group eng10 does not exist - using root
> >> user jsquyres does not exist - using root
> >> group eng10 does not exist - using root
> >> Bad exit status from /var/tmp/rpm-tmp.40739 (%build)
> >>
> >>
>

Re: [OMPI devel] VT compile error: Fwd: [ofa-general] OFED 1.4.1 (rc1) is available

2009-03-05 Thread Pavel Shamis (Pasha) 
Adding pointer to OFED bugzilla ticket for more information: 
https://bugs.openfabrics.org/show_bug.cgi?id=1537


Jeff Squyres wrote:

VT guys --

It looks like we still have a compile bug in OMPI 1.3.1rc4...  See below.

Do you think you can get a fix ASAP for OMPI 1.3.1final?


Begin forwarded message:


*From: *"PN" >
*Date: *March 5, 2009 12:51:28 AM EST
*To: *"Tziporet Koren" >
*Cc: *>, 
>

*Subject:** Re: [ofa-general] OFED 1.4.1 is available*

HI,

I have a build error of OFED-1.4.1-rc1 under CentOS 5.2:

.
Build openmpi_gcc RPM
Running  rpmbuild --rebuild  --define '_topdir /var/tmp/OFED_topdir' 
--define 'dist %{nil}' --target x86_64 --define '_name openmpi_gcc' 
--define 'mpi_selector /usr/bin/mpi-selector' --define 
'use_mpi_selector 1' --define 'install_shell_scripts 1' --define 
'shell_scripts_basename mpivars' --define '_usr /usr' --define 'ofed 
0' --define '_prefix /usr/mpi/gcc/openmpi-1.3.1rc4' --define 
'_defaultdocdir /usr/mpi/gcc/openmpi-1.3.1rc4' --define '_mandir 
%{_prefix}/share/man' --define 'mflags -j 4' --define 
'configure_options   --with-openib=/usr 
--with-openib-libdir=/usr/lib64  CC=gcc CXX=g++ F77=gfortran 
FC=gfortran --enable-mpirun-prefix-by-default' --define 
'use_default_rpm_opt_flags 1' 
/opt/software/packages/ofed/OFED-1.4.1-rc1/OFED-1.4.1-rc1/SRPMS/openmpi-1.3.1rc4-1.src.rpm

Failed to build openmpi RPM
See /tmp/OFED.28377.logs/openmpi.rpmbuild.log


In /tmp/OFED.28377.logs/openmpi.rpmbuild.log:
.
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib 
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE 
-DBINDIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/bin\" 
-DDATADIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  -DVT_MEMHOOK 
-DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT 
vt_iowrap_helper.o -MD -MP -MF .deps/vt_iowrap_helper.Tpo -c -o 
vt_iowrap_helper.o vt_iowrap_helper.c

mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib 
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE 
-DBINDIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/bin\" 
-DDATADIR=\"/usr/mpi/gcc/openmpi-1.3.1rc4/share\" -DRFG  -DVT_MEMHOOK 
-DVT_IOWRAP  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT 
rfg_regions.o -MD -MP -MF .deps/rfg_regions.Tpo -c -o rfg_regions.o 
rfg_regions.c
vt_iowrap.c:1242: error: expected declaration specifiers or '...' 
before numeric constant

vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk'
mv -f .deps/vt_iowrap_helper.Tpo .deps/vt_iowrap_helper.Po
make[5]: *** [vt_iowrap.o] Error 1
make[5]: *** Waiting for unfinished jobs
mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po
mv -f .deps/rfg_regions.Tpo .deps/rfg_regions.Po
make[5]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt/vtlib'

make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'

make[3]: *** [all] Error 2
make[3]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt/vt'

make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi/contrib/vt'

make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory 
`/var/tmp/OFED_topdir/BUILD/openmpi-1.3.1rc4/ompi'

make: *** [all-recursive] Error 1
error: Bad exit status from /var/tmp/rpm-tmp.40739 (%build)


RPM build errors:
user jsquyres does not exist - using root
group eng10 does not exist - using root
user jsquyres does not exist - using root
group eng10 does not exist - using root
Bad exit status from /var/tmp/rpm-tmp.40739 (%build)


The error seems similar to 
http://www.open-mpi.org/community/lists/devel/2009/01/5230.php


Regards,
PN


2009/3/5 Tziporet Koren >


Hi,

OFED-1.4.1-rc1 release is available on

_http://www.openfabrics.org/downloads/OFED/ofed-1.4.1/OFED-1.4.1-rc1.tgz_


To get BUILD_ID run ofed_info

Please report any issues in bugzilla
_https://bugs.openfabrics.org/_ for OFED 1.4.1

Vladimir & Tziporet




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