Re: [easybuild] building recent ATLAS version with recent toolchain

Hi Exequiel, On 28/10/16 12:26, Exequiel Sepúlveda wrote: Hi Kenneth, I could compile ATLAS 3.10.2 using GCC 5.3.0. We could try to do it for version 3.10.3. My weekend started :-) On Monday I could share the eb file that I have. Thank you for that info, that was helpful: building ATLAS 3.10.

Re: [easybuild] Comments in patches

Ward, I sure will. Davide On Oct 28 2016, at 2:36 am, Ward Poelmans wrote: On 27-10-16 20:57, Vanzo, Davide wrote: > Hello all, > I don't know you but I would find very useful to have some introductory > comment on the patch files that explain what it actually does. For > example I am trying t

Re: [easybuild] building recent ATLAS version with recent toolchain

Hi Exequiel, On 28/10/16 12:26, Exequiel Sepúlveda wrote: Hi Kenneth, I could compile ATLAS 3.10.2 using GCC 5.3.0. We could try to do it for version 3.10.3. My weekend started :-) On Monday I could share the eb file that I have. Which LAPACK version were you using for ATLAS 3.10.2? regards

Re: [easybuild] building recent ATLAS version with recent toolchain

Hi Kenneth, I could compile ATLAS 3.10.2 using GCC 5.3.0. We could try to do it for version 3.10.3. My weekend started :-) On Monday I could share the eb file that I have. Cheers 2016-10-28 18:18 GMT+10:30 Kenneth Hoste : > Hi all, > > Has anyone on the list built a recent version of ATLAS (pref

Re: [easybuild] ld issue?

Hi Erik, On 28/10/16 09:18, Erik Smeets wrote: Hi, When installing ncurses-6.0-foss-2016b.eb the build fails: /usr/bin/ld: BFD version 2.20.51.0.2-5.42.el6 20100205 internal error, aborting at reloc.c line 443 in bfd_get_reloc_size It seems it using the system ld instead of the ld from the bi

[easybuild] building recent ATLAS version with recent toolchain

Hi all, Has anyone on the list built a recent version of ATLAS (preferable the latest 3.10.3) with a somewhat recent toolchain? I'm looking into moving easyconfig files that use a deprecated toolchain [1] to the __archive__ subdirectory in the easyconfigs repository, while trying to make sur

Re: [easybuild] Comments in patches

On 27-10-16 20:57, Vanzo, Davide wrote: > Hello all, > I don't know you but I would find very useful to have some introductory > comment on the patch files that explain what it actually does. For > example I am trying to build numpy 1.11.2 with GCC 5.4.0 and most of the > easyconfig files in the de

RE: [easybuild] How to rebuild the foss-2016b toolchain with OpenMPI including Slurm support?

Hi Kenneth, Full path to installation of PBS. PBS is not installed with EB, but loaded as external module. Specifying the following wasn't sufficient: configopts += '--with-tm ' But using the following does work: configopts += '--with-tm=/full/path/to/install/of/pbs ' Regards, Erik > -Ori

[easybuild] ld issue?

Hi, When installing ncurses-6.0-foss-2016b.eb the build fails: /usr/bin/ld: BFD version 2.20.51.0.2-5.42.el6 20100205 internal error, aborting at reloc.c line 443 in bfd_get_reloc_size It seems it using the system ld instead of the ld from the binutils module, although this is loaded. Why is th

Re: [easybuild] How to rebuild the foss-2016b toolchain with OpenMPI including Slurm support?

Hi Ole, On 28/10/16 09:01, Ole Holm Nielsen wrote: Hi Erik, Thanks for your input. I already discovered that I had to add to OpenMPI-1.10.3-GCC-5.4.0-2.26.eb this line: configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr ' # Support of Slurm Question: What's

Re: [easybuild] How to rebuild the foss-2016b toolchain with OpenMPI including Slurm support?

Hi Erik, Thanks for your input. I already discovered that I had to add to OpenMPI-1.10.3-GCC-5.4.0-2.26.eb this line: configopts += '--with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr ' # Support of Slurm Question: What's the difference when you add --rebuild to --force? I