And now updated to include the patches...
On 03/01/2017 09:26 PM, Åke Sandgren wrote:
> PR 4232, please take a look
>
> On 03/01/2017 08:56 PM, Siddiqui, Shahzeb wrote:
>> Please fire away!
>>
>> -Original Message-
>> From: easybuild-requ...@lists.ugent.be
>> [mailto:easybuild-requ...@li
PR 4232, please take a look
On 03/01/2017 08:56 PM, Siddiqui, Shahzeb wrote:
> Please fire away!
>
> -Original Message-
> From: easybuild-requ...@lists.ugent.be
> [mailto:easybuild-requ...@lists.ugent.be] On Behalf Of Åke Sandgren
> Sent: Wednesday, March 1, 2017 2:54 PM
> To: easybuild@
Shahzeb,
the fosscuda toolchain is still a work in progress and no PR have been released
yet.
Hopefully I will get something working in the next months.
--
Davide Vanzo, PhD
Application Developer
Adjunct Assistant Professor of Chemical and Biomolecular Engineering
Advanced Computing Center for Re
This might be a dumb question, I don’t see a foss toolchain, the only closest
one is goolfc which uses gompic toolchain. Which toolchain should we use?
From: easybuild-requ...@lists.ugent.be
[mailto:easybuild-requ...@lists.ugent.be] On Behalf Of Vanzo, Davide
Sent: Wednesday, March 1, 2017 2:48
Please fire away!
-Original Message-
From: easybuild-requ...@lists.ugent.be
[mailto:easybuild-requ...@lists.ugent.be] On Behalf Of Åke Sandgren
Sent: Wednesday, March 1, 2017 2:54 PM
To: easybuild@lists.ugent.be
Cc: Oliver Stueker
Subject: Re: [easybuild] GROMACS with gpu support
I have
I have a easyconfig for GROMACS 2016 with the goolfc toolchain (CUDA)
I keep forgetting to PR it.
It's been in production for a couple of month now.
Do you want me to PR it?
On 03/01/2017 08:47 PM, Vanzo, Davide wrote:
> Maxime and Oliver,
> since GROMACS with GPU acceleration is in my software
Maxime and Oliver,
since GROMACS with GPU acceleration is in my software list for the fosscuda
toolchain I will be working on, I would be interested in sharing the pain if
somebody is already working on it.
--
Davide Vanzo, PhD
Application Developer
Adjunct Assistant Professor of Chemical and Bi
Hi Shahzeb,
I am putting you in contact with my colleague Oliver Stueker. He is
actually working to modify the recipe for GROMACS GPU. Maybe he can help.
Maxime
On 17-03-01 14:38, Siddiqui, Shahzeb wrote:
Hello,
I am curious how I would build GROMACS with GPU support, I only see
GROMACS bu
Hello,
I am curious how I would build GROMACS with GPU support, I only see GROMACS
build with multithreaded and hybrid approach. I notice this is just a tweak to
toolchainopts that sets whether to build with openmp and mpi. This seems fine,
but not sure how I would build with cuda.
Do I need t
Hi Kenneth,
we still (even with the naming being completely consistent) had a little
sanity check bug here:
--- a/easybuild/framework/easyconfig/easyconfig.py
+++ b/easybuild/framework/easyconfig/easyconfig.py
@@ -1668,7 +1668,8 @@ class ActiveMNS(object):
self.log.debug("Obtained valid s
On 28/02/2017 22:17, Bart Oldeman wrote:
Hi,
I figured it out. There is a strict naming in easyconfig names for
dependencies we have to adhere to:
name-version-toolchain-versionsuffix.
So the dep is of the form:
('HDF5', '1.8.18', '-serial', ('iccifort', '2016.4.258'))
(the toolchain can be
notes are available at
https://github.com/hpcugent/easybuild/wiki/Conference-call-notes-20170301
next conf call is planned for Wed March 15th, see also
https://plus.google.com/events/c1f3gt69hoashfluir48htdsols
On 28/02/2017 20:00, Kenneth Hoste wrote:
Dear EasyBuilders,
The next EasyBuild
Thanks Alan,
This explains that. We'll look into using the gcc/system toolchain.
Maxime
On 17-03-01 09:59, Alan O'Cais wrote:
Afraid so, the toolchainopts do nothing for the dummy toolchain since
EasyBuild doesn't "know" anything about the options dummy an accept.
If you want to wrap the syst
Hi,
What does "pic:True" do for a toolchain ?
I would have expected it to enable -fPIC and -DPIC flags. However, I
just tried installing JasPer-1.900.1 with the dummy-dummy toolchain, and
the flags were not there (and a futher build of GDAL failed because the
symbols did not have PIC).
I di
Afraid so, the toolchainopts do nothing for the dummy toolchain since EasyBuild
doesn't "know" anything about the options dummy an accept.
If you want to wrap the system compiler properly, you should probable use
GCC/system (see
https://github.com/hpcugent/easybuild-easyconfigs/blob/master/easy
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