Re: [easybuild] Build MRtrix depends on OS liblzma

[Yann Sagon]

Hello, are you talking about this log file?

https://gist.github.com/ysagon/1823752abf05ae675cf5cd17ca3e74cd

This is the log once the build is finished.

Best


On Fri, May 24, 2019 at 8:01 PM Kenneth Hoste 
wrote:

> Hi Yann,
>
> Can you share the full (preferably debug) EasyBuild log thay shows the
> issue?
>
> Maybe the MRtrix build scripts hardcode system locations somewhere?
>
>
> regards,
>
> Kenneth
>
> On 24/05/2019 15:39, Alan O'Cais wrote:
> > Have you checked the configure output? Does  PKG_CONFIG_PATH  appear in
> > your XZ module file? If so then it should be able to find it in
> > PKG_CONFIG_PATH at configure time.  If either of those is not the case
> > then you probably need  Autotools as a builddep of your XZ/MRtrix
> > easyconfigs?
> >
> > On Fri, 24 May 2019 at 15:08, Yann Sagon  > > wrote:
> >
> > Dear list,
> >
> > I'm trying to build MRtrix-3.0_RC3 for foss/2018b on CentOS6 and the
> > issue is that it depend on libzma, even if XZ is included as
> > dependency in the eb file.
> >
> > ldd $(which mrinfo) | grep zma
> >  liblzma.so.0 => /usr/lib64/liblzma.so.0 (0x2aea556e7000)
> >
> > Here is the eb file I'm using:
> > https://gist.github.com/ysagon/4e1b5f66450a467c0d8ec3765d5b456c
> >
> > Any clue?
> >
> > Best
> >
> >
> > --
> > Logo UNIGEYann Sagon
> > Référent HPC
> >
> > Division du système et des technologies de l'information et de la
> > communication
> > Université de Genève | 24 rue Général-Dufour
> > Tél 022 379 77 37 | Bureau 151
> >
> > www.unige.ch/stic 
> >
> >
> >
> > --
> > Dr. Alan O'Cais
> > E-CAM Software Manager
> > Juelich Supercomputing Centre
> > Forschungszentrum Juelich GmbH
> > 52425 Juelich, Germany
> >
> > Phone: +49 2461 61 5213
> > Fax: +49 2461 61 6656
> > E-mail: a.oc...@fz-juelich.de 
> > WWW: http://www.fz-juelich.de/ias/jsc/EN
> >
> >
> >
> 
> >
> 
> > Forschungszentrum Juelich GmbH
> > 52425 Juelich
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> > Prof. Dr. Sebastian M. Schmidt
> >
> 
> >
> 
> >
>


-- 
[image: Logo UNIGE] Yann Sagon
Référent HPC

Division du système et des technologies de l'information et de la
communication
Université de Genève | 24 rue Général-Dufour
Tél 022 379 77 37 | Bureau 151

www.unige.ch/stic

Re: [easybuild] INTERFACE64 for OpenBLAS?

[Loris Bennett]

Åke Sandgren  writes:

Thanks, the Intel version builds without any problem.

Cheers,

Loris

> This should have gone to the list...
>
> On 6/3/19 8:39 AM, Åke Sandgren wrote:
>> I'd say not to bother with OpenMolcas using foss, you need ilp64
>> scalapack too if i remember correctly, and that means MKL only.
>> 
>> The OpenBLAS build does not generate an ilp64 version of the library at
>> the moment.
>> 
>> On 5/31/19 10:38 AM, Loris Bennett wrote:
>>> Hi,
>>>
>>> I'm writing a easyconfig for OpenMolcas with the foss-2018b toolchain
>>> and am getting the following error during the configure step:
>>>
>>>   OpenBLAS was not configured for 64-bit integer interface, please build
>>>   OpenBLAS with INTERFACE64=1 defined.
>>>
>>> Is this something that is indeed not defined for the OpenBLAS module in
>>> the foss-2018b toolchain, or is the error spurious?

-- 
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin Email loris.benn...@fu-berlin.de

Re: [easybuild] INTERFACE64 for OpenBLAS?

[Åke Sandgren]

This should have gone to the list...

On 6/3/19 8:39 AM, Åke Sandgren wrote:
> I'd say not to bother with OpenMolcas using foss, you need ilp64
> scalapack too if i remember correctly, and that means MKL only.
> 
> The OpenBLAS build does not generate an ilp64 version of the library at
> the moment.
> 
> On 5/31/19 10:38 AM, Loris Bennett wrote:
>> Hi,
>>
>> I'm writing a easyconfig for OpenMolcas with the foss-2018b toolchain
>> and am getting the following error during the configure step:
>>
>>   OpenBLAS was not configured for 64-bit integer interface, please build
>>   OpenBLAS with INTERFACE64=1 defined.
>>
>> Is this something that is indeed not defined for the OpenBLAS module in
>> the foss-2018b toolchain, or is the error spurious?
>>
>> Cheers,
>>
>> Loris
>>
> 

-- 
Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden
Internet: a...@hpc2n.umu.se   Phone: +46 90 7866134 Fax: +46 90-580 14
Mobile: +46 70 7716134 WWW: http://www.hpc2n.umu.se