Re: [easybuild] R 3.3.1 with Rmpi

2016-07-02 Thread Bart Oldeman
HI Yann, the orte_run message (Error obtaining unique transport key from ORTE (orte_precondition_transports not present in the environment) is normal with OpenMPI on QLogic/Intel/PSM fabrics. There are two ways to avoid it: 1) disable PSM (obviously not recommended for parallel jobs): export

Re: [easybuild] R 3.3.1 with Rmpi

2016-07-02 Thread Yann Sagon
Thanks Adam and Kenneth. I have now a working R 3.3.1 but without ext_lib update and without including some ext_lib that failed to compile, but at least it's compiling and it's fine for me. As I don't have time to upgrade this ext_lib list, I share here my working eb file for R 3.3.1 in case