[easybuild] list address on GitHub

Hi, FYI: The link to the mailinglist on https://github.com/hpcugent/easybuild is https://lists.ugent.be/sympa/info/easybuild which results for me in 404 page not found error. Replacing sympa for wws in that URL does work for me :) Cheers, Pi

[easybuild] Failing tests

Dear EasyBuild devs, Recently I installed 2.0.0 and when I run the tests 8 of the 252 fail (see below): is this really a problem or can I safely ignore these failures? Cheers, Pi == ERROR: Test the deprecated option

Re: [easybuild] Easier way of installing R packages

Hi, On Jun 24, 2015, at 7:34 AM, Kenneth Hoste wrote: > Hi Riccardo, > > On 19/06/15 10:32, Riccardo Murri wrote: >> Hi Ken, all, >> >> (Kenneth Hoste, Thu, Jun 18, 2015 at 04:32:27PM +0200:) >>> We deliberately do not enable 'dependency=True', to ensure we can

Re: [easybuild] Easier way of installing R packages

Hi Kenneth, On Jun 24, 2015, at 11:10 AM, Kenneth Hoste <kenneth.ho...@ugent.be> wrote: > Hi Pieter, > > On 24/06/15 10:58, Pieter Neerincx wrote: >> Hi, >> >> On Jun 24, 2015, at 7:34 AM, Kenneth Hoste <kenneth.ho...@ugent.be> wrote: >> >>

Re: [easybuild] Easier way of installing R packages

On Jun 29, 2015, at 3:37 PM, Pablo Escobar Lopez <pablo.escobarlo...@unibas.ch> wrote: > > > 2015-06-24 10:58 GMT+02:00 Pieter Neerincx <pieter.neeri...@gmail.com>: > > Yesterday I started working on an R-script that generates an *.eb from an > existing

Re: [easybuild] Easier way of installing R packages

; 2015-06-29 16:25 GMT+02:00 Pieter Neerincx <pieter.neeri...@gmail.com>: > > On Jun 29, 2015, at 3:37 PM, Pablo Escobar Lopez > <pablo.escobarlo...@unibas.ch> wrote: > > > > > > > 2015-06-24 10:58 GMT+02:00 Pieter Neerincx <pieter.neeri...@gmail.com&

Re: [easybuild] Easier way of installing R packages

1 support is the key to getting the PNG capability. I was > working on it a bit yesterday and hope to figure it out today. > > We need it for plot generation. > > > On Thu, Jul 23, 2015, 6:46 AM Pieter Neerincx <pieter.neeri...@gmail.com> > wrote: > Hi Stefano, &g

Re: [easybuild] Easier way of installing R packages

Hi Fotis, On Jul 23, 2015, at 4:20 AM, Fotis Georgatos <fo...@mail.cern.ch> wrote: > > Hi Pieter, > > On Jul 22, 2015, at 3:42 PM, Pieter Neerincx <pieter.neeri...@gmail.com> > wrote: >> https://github.com/fgeorgatos/easybuild.experimental >

Re: [easybuild] Easier way of installing R packages

om/easybuild/ebfiles_repo_cleaned/ada/R/R-3.2.0-intel-2015B-default-mt.eb > > and supporting packages: > >http://www.siliconslick.com/easybuild/ebfiles_repo_cleaned/ada/ > > slick ( off to http://www.Quakecon.org ) > > On 07/23/2015 06:37 AM, Pieter Neerincx wro

Re: [easybuild] Add .R script to path

Hi Niek, I don't think it's an issue with $PATH. It looks like the scripts are not executable when decompressed "as is". You could try to add something like this to your easyconfig postinstallcmds = [ 'chmod -R 775 %(installdir)s/*.*sh', 'chmod -R 775 %(installdir)s/*.pl', 'chmod

Re: [easybuild] Easier way of installing R packages

Hi Robert, On Jul 22, 2015, at 4:47 PM, Robert Schmidt wrote: > Thanks for this. I just opened the 3.2.1-goolf-1.7.20 easyconfig PR. I'll see > if we should update any extensions. Check, thanks! I just updated the generator to include 'LibTIFF', '4.0.3' (was previously

Re: [easybuild] Easier way of installing R packages

Hi Fotis, On Jul 25, 2015, at 11:32 AM, Fotis Georgatos wrote: > > Hi Pieter, > >>> For libpng-1.6.17 and freetype-2.6 I had to create new easyconfigs and >>> patches as these libs contain bugs and some R packages fail to compile with >>> the plain vanilla libs. > > Can

Re: [easybuild] [ANN] EasyBuild v2.5.0

Hi Kenneth, Thanks for the greatest! I'm running into what appear to be a small problem when running the tests. Output ends with: Skipping test_parse_yeb (no PyYAML available) .E.Skipping test_join (no PyYAML available) .Skipping test_parse_yeb (no PyYAML available) .

Re: [easybuild] [ANN] EasyBuild v2.5.0

seeing the same, >>> see https://github.com/hpcugent/easybuild-framework/issues/1524 for a >>> full report. >>> >>> Best wishes >>> Joachim >>> >>>> On 18 Dec 2015, at 15:43, Pieter Neerincx <pieter.neeri..

Re: [easybuild] Where is the LAPACK dependency defined for the foss toolchains

gs/issues/1435 > > Pablo > > 2016-05-28 16:23 GMT+02:00 Kenneth Hoste <kenneth.ho...@ugent.be>: > Hi Pieter, > > On 28/05/16 15:04, Pieter Neerincx wrote: > > Hi all, > > > > I'm trying to build a new R with a recent foss toolchain. I've tried 2015b

Re: [easybuild] Where is the LAPACK dependency defined for the foss toolchains

Redeployed bzip2 and all is well now. Thanks for the pointers to the fixes! Cheers, Pi > regards, > Pablo. > > > > 2016-05-29 17:32 GMT+02:00 Pieter Neerincx <pieter.neeri...@gmail.com>: > Hi Kenneth and Pablo, > > Thanks for the intel'! This is indeed relat

[easybuild] generateEasyConfig.R generator for R 3.3.0 (was: Where is the LAPACK dependency defined for the foss toolchains)

Hi all, For those who need to create EasyConfigs for R: I've updated the generateEasyConfig.R generator for R 3.3.0 @ https://github.com/fgeorgatos/easybuild.experimental/tree/master/users/pneerincx/ Cheers, Pi > On 31 May 2016, at 14:47, Pieter Neerincx <pieter.neeri...@gma

[easybuild] EasyBuild 2.8.1 fails 2 tests from test.framework.suite

Hi all, When I run python -m test.framework.suite it reproducibly fails on these two tests: --include-toolchains. --include-module-naming-schemes. in what appears to be a silly way: it cannot find the eb command. Apart from this test anomaly EasyBuild 2.8.1 seems to

Re: [easybuild] EasyBuild 2.8.1 fails 2 tests from test.framework.suite

r now... I do understand that you want to have a "clean" environment for the tests, but why does the test not simply use something like module purge module load EasyBuild eb Cheers, Pi > regards, > > Kenneth > > On 06/06/16

Re: [easybuild] Bootstrap specific EasyBuild version

Hi, Thanks to all who responded with suggestions how to bootstrap a specific version! Looks like "there is more than one way to do it" except for a Perl wrapper ;) Cheers, Pi > On 06 Apr 2017, at 00:29, Fotis Georgatos wrote: > > Hi Damian, all, > > On Apr 5, 2017, at