[easybuild] Theano orte_init

h may only be relevant to an Open MPI developer): PMI2_Job_GetId failed failed --> Returned value (null) (14) instead of ORTE_SUCCESS It worth be said that I have compiled OpenMPI with the following additional flags: configopts += '--with-slurm --with-pmi ' Thanks for any suggestion -- Yann SA

Re: [easybuild] Theano orte_init

submitted to a > scheduler? > > On Wed, Feb 22, 2017 at 5:36 AM Yann Sagon <yann.sa...@unige.ch> wrote: > >> Hello, >> >> I'm back again with my problem (I had a similar problem with Rmpi), maybe >> someone has an idea of what is going on. >

[easybuild] cd to a directory with easybuild

of Gadget2 contains a directory named Gadget2, so I need to instruct easybuild to cd to that directory. Is this possible or I need to write my own easyblock? I'm using the easyblock MakeCp as there is no configure. Thanks -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4

Re: [easybuild] cd to a directory with easybuild

. Created the diff : diff -u Makefile.o Makefile > Gadget-2.0.7-makefile-hardcoding.patch Error message: "Can't determine patch level for patch" 2015-07-02 17:51 GMT+02:00 Ward Poelmans <ward.poelm...@ugent.be>: > Hi Yann, > > Welcome to Easybuild. > > On Thu,

[easybuild] building HDF5 version 1.6.x

files? If yes, what would be cleaner, create a new easyblock or override? Thanks! -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch

Re: [easybuild] building HDF5 version 1.6.x

> > > > You can override the paths that the sanity check uses, see > > http://easybuild.readthedocs.org/en/latest/Writing_easyconfig_files.html#sanity-check > > > Thanks, it's working fine like that (with override).

[easybuild] configure flag for openmpi

, it's ugly. Is there any news on this topic? Best -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch

Re: [easybuild] configure flag for openmpi

nfigs of > OpenMPI? > > > Ward > -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch

Re: [easybuild] configure flag for openmpi

gards, > Bart > > > On 12 April 2016 at 08:26, Yann Sagon <yann.sa...@unige.ch> wrote: > >> Thanks Ward, >> >> but, there are a lot of OpenMPI files (even if I don't need them all of >> course) and what happens when I upgrade eb? >> >> 2016-0

[easybuild] compiling ANTs with try-toolchain and try-software-version

/sagon/easybuild/dev.cfg ANTs-2.1.0rc3-goolf-1.5.14.eb --robot --try-toolchain=foss,2016a --try-software-version=2.1.0 and I got this error: ERROR: Failed to find easyconfig file 'ncurses-5.9-foss-2016a.eb' Is there any obvious reason? -- Yann SAGON Ingénieur système HPC 24 Rue du Général

[easybuild] python dependencies and toolchain

pragma. [1] https://github.com/hpcugent/easybuild-easyconfigs/blob/master/easybuild/easyconfigs/b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb Thanks -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch

Re: [easybuild] python dependencies and toolchain

- > > echo "sysadmin know better bash than english" | sed s/min/mins/ \ > | sed 's/better bash/bash better/' # Yelling in a CERN forum > > -- > *From:* easybuild-requ...@lists.ugent.be [easybuild-requ...@lists.ugent.be] > on behalf of

[easybuild] R 3.3.1 with Rmpi

Hello, I'm trying to tweak the file R-3.2.3-foss-2016a.eb to install version 3.3.1 of R. In this file, there is a list of non standard exts. Rmpi seems to do some checking once installed and failed with orte_init. Any clue? -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211

Re: [easybuild] R 3.3.1 with Rmpi

-type=OPENMPI" --library=/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.3.1/lib64/R/library --no-clean-on-error without mpirun, it' failed with the test. 2016-06-29 18:00 GMT+02:00 Kenneth Hoste <kenneth.ho...@ugent.be>: > Hi Yann, > > On 29/06/16 17:51, Yann Sagon wrot

Re: [easybuild] R 3.3.1 with Rmpi

someone want's to use it. https://github.com/ysagon/easybuild-easyconfigs/blob/R-3.3.1-foss-2016a/easybuild/easyconfigs/r/R/R-3.3.1-foss-2016a.eb Let me know if you want that I do a PR. Best 2016-06-30 10:17 GMT+02:00 Yann Sagon <yann.sa...@unige.ch>: > Hello, > > After some investiga

Re: [easybuild] R 3.3.1 with Rmpi

ee the gist) , I have this error message: https://gist.github.com/ysagon/c9c5a7207dc77278ead6e4b53dd66929 Best -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch

[easybuild] versionsuffix not interpreted.

': '-Python-%(pyver)s', 'version': '3.5.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} Any hint? Thanks -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch

Re: ΠΡΟΣ: [easybuild] bazel

gt; Hello Yann, > > Not sure at all if you are hitting this, but there used to be a bazel > build issue against the glibc of centos6.* > > Could it be this case?! > > F. > > > Αποστολή από κινητό Samsung. > > > ---- Αρχικό μήνυμα > Από: Yann Sag

[easybuild] bazel

could be the difference between devtoolset and foss/x and why it's not working? Here is the issue that I have opened on github for Bazel: https://github.com/bazelbuild/bazel/issues/2534 Many thanks -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41

[easybuild] need help to write easyconfig file for fall3d

not the correct way to set an env variable with EB? Any clue? -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch

Re: [easybuild] need help to write easyconfig file for fall3d

; > pablo.escobarlo...@unibas.ch>: > >> Hi Yann, >> >> Try doing this: >> >> prebuildopts = 'export SCRIPTDIR=%(installdir)s && ' >> >> preinstallopts = 'export SCRIPTDIR=%(installdir)s && ' >> >> Pablo. >> >>

[easybuild] upgrade eb failed

/3.0.2 EasyBuild/3.1.0 I'm unable to find the file 3.1.2.lua. How can I tell eb to not erase the temporary log file to see if there is something obvious? Thanks -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa

Re: [easybuild] upgrade eb failed

Thanks Damian and Kenneth, I'm just stupid, I forgot to specify my usual config file, so it was indeed installed in an other place:( Sorry and thanks! 2017-05-02 16:30 GMT+02:00 Kenneth Hoste <kenneth.ho...@ugent.be>: > On 02/05/2017 15:39, Yann Sagon wrote: > > Hello, > &g

[easybuild] resume build R

ied to use --skip, but it seems it's starting from scratch and as there are ~400 extensions, this is takes time. -- Yann SAGON Ingénieur système HPC 24 Rue du Général-Dufour 1211 Genève 4 - Suisse Tél. : +41 (0)22 379 7737 yann.sa...@unige.ch - www.unige.ch

Re: [easybuild] resume build R

e-sciences > > John Dey > j...@fuzzdog.com > > On Tue, Nov 21, 2017 at 12:37 AM, Kenneth Hoste <kenneth.ho...@ugent.be> > wrote: > >> Dear Yann, >> >> On 21/11/2017 09:34, Yann Sagon wrote: >> >> Hello, >> >> I'm trying to build

Re: AW: [easybuild] foss/2018a pmi slurm

-static) and rebuild > > OpenMpi it should work. > > > > (https://github.com/open-mpi/ompi/issues/4338#issuecomment-384578916) > > > > > > Best, > > > > Andreas > > > > > > *Von:* easybuild-requ...@lists.ugent.be > >

Re: [easybuild] build TensorFlow-1.6.0-foss-2018a-Python-3.6.4.eb

oesn't ring a bell for me, but maybe some CUDA drivers are missing? > > Something is wrong here, libdevice.10.bc doesn't exist until CUDA 9.0 > > -- > Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden > Internet: a...@hpc2n.umu.se Phone: +46 90 7866134 Fax: +46 90-580 14

[easybuild] foss/2018a pmi slurm

Dear list, I installed foss/2018a without slurm specific flags (because I forgot) and then I recompiled only openmpi with the following flags : --with-slurm --with-pmi I think there is no need to recompile something else, but I may be mistaken. When I try to submit a job using srun, I have the

Re: [easybuild] build TensorFlow-1.6.0-foss-2018a-Python-3.6.4.eb

> Please let us know whether that helps, and whether you need to apply > Mikael's patch as well or not. > > > regards, > > Kenneth > > > > > Best regards, Mikael > > > > > > > > On Wed, Apr 25, 2018 at 6:01 PM, Yann Sagon <yann.sa...

[easybuild] building TensorFlow doesn't respect job-cores

I just noticed that building TF17 with cuda compute 6.0 and 6.1 doesn't respect the job-cores = 12 that I have in my config file. According to htop, it's using ~28 cores Best -- [image: Logo UNIGE] Yann Sagon Chef d'équipe HPC Division du système et des technologies de l'information et de la

Re: [easybuild] building TensorFlow doesn't respect job-cores

Dear Kenneth, 2018-04-30 11:32 GMT+02:00 Kenneth Hoste <kenneth.ho...@ugent.be>: > Dear Yann, > > On 30/04/2018 11:28, Yann Sagon wrote: > > I just noticed that building TF17 with cuda compute 6.0 and 6.1 doesn't > > respect the job-cores = 12 that I have i

[easybuild] build TensorFlow-1.6.0-foss-2018a-Python-3.6.4.eb

Dear list, I'm very happy to see that TF is now available in eb as compiled from source, not only the whl. Unfortunately, I have an error when trying to build: /opt/ebsofts/Core/GCCcore/6.4.0/bin/gcc -U_FORTIFY_SOURCE -fstack-protector -Wall -B/opt/ebsofts/Core/GCCcore/6.4.0/bin

Re: [easybuild] build TensorFlow-1.6.0-foss-2018a-Python-3.6.4.eb

rFlow > [2] > https://github.com/easybuilders/easybuild-easyblocks/blob/develop/ > easybuild/easyblocks/t/tensorflow.py > > On 25/04/2018 15:12, Yann Sagon wrote: > > Dear list, > > > > I'm very happy to see that TF is now available in eb as compiled from > >

[easybuild] override sanity check for futures with Python 2.7

portError: No module named futures, (at easybuild/framework/easyblock.py:2369 in _sanity_check_step) Best -- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch/stic

Re: [easybuild] override sanity check for futures with Python 2.7

le of how to do it. > > Alan > > On Tue, 26 Mar 2019 at 14:02, Yann Sagon wrote: > >> Dear list, >> >> I'm trying to build dask for python 2.7.15 with the toolchain >> fosscuda/2018b >> >> the Python extension "distributed" needs the

[easybuild] libUUID error with libfontconfig for GCCcore

the dependencies of Pango and LibUUID is not loaded as expected. Any clue? Best -- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch/stic

[easybuild] resume build for software with extensions

UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch/stic

Re: [easybuild] resume build for software with extensions

Dear Kennet, thanks for your answer. On Fri, Mar 8, 2019 at 11:21 AM Kenneth Hoste wrote: > Dear Yann, > > On 07/03/2019 14:06, Yann Sagon wrote: > > Dear list, > > > > sometime ago, I asked this question on the same list. I think I tried > > the procedure but

Re: [easybuild] resume build for software with extensions

ping! -- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch/stic

[easybuild] cuda with cuda samples

automatically? What is the best to compile them then? Should I go to the sample directory and do it manually using make? Best -- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022

RE: [easybuild] cuda with cuda samples

Dear Damian, thanks, this should do the tricks! Best De : easybuild-requ...@lists.ugent.be de la part de Alvarez, Damian Envoyé : lundi, 11 février 2019 16:29 À : easybuild@lists.ugent.be Objet : Re: [easybuild] cuda with cuda samples Dear Yann, I

[easybuild] skip R package load during sanity check

eb file [2] What is the correct way to tell EB not to try to load this package during sanity check? Thanks [1] https://cran.r-project.org/web/packages/RInside/index.html [2] https://gist.github.com/ysagon/c2aa7846cdf8f68de53d4a3b04f5a17d -- [image: Logo UNIGE] Yann Sagon Référent HPC Division

Re: [easybuild] Build MRtrix depends on OS liblzma

Z module file? If so then it should be able to find it in > > PKG_CONFIG_PATH at configure time. If either of those is not the case > > then you probably need Autotools as a builddep of your XZ/MRtrix > > easyconfigs? > > > > On Fri, 24 May 2019 at 15:08, Yann Sagon >

Re: [easybuild] skip R package load during sanity check

Dear Kenneth, On Tue, Jun 4, 2019 at 1:34 PM Kenneth Hoste wrote: > Dear Yann, > > This is probably what you're looking for (it's a bit non-intuitive I > guess): > > options = {'modulename': False} > > Using False should effectively skip the import check which is usually done. > Great, that

[easybuild] FSL with CUDA and or openMP

Dear list, a user of our cluster wanted to have FSL 5.0.11 with CUDA support. Any clue how to do that? I have tried to add CUDA as dependency to the eb file but of course it's not enough:) Thanks -- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de

Re: [easybuild] Unable to install Eb on CentOS 7.6

On Tue, Jun 18, 2019 at 3:36 PM Yann Sagon wrote: > > > Maybe I misunderstood, but I thought the required packages like setuptools > are provided by the boostrap stage0? > > I installed python-setuptools > > then the error is ImportError: No module named future.utils >

Re: [easybuild] FSL with CUDA and or openMP

Dear Kenneth, On Mon, Jun 17, 2019 at 10:31 AM Kenneth Hoste wrote: > Dear Yann, > > On 14/06/2019 21:12, Yann Sagon wrote: > > Dear list, > > > > a user of our cluster wanted to have FSL 5.0.11 with CUDA support. > > > > Any clue how to do that?

[easybuild] Unable to install Eb on CentOS 7.6

-- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch/stic

Re: [easybuild] Unable to install Eb on CentOS 7.6

Hello On Tue, Jun 18, 2019 at 2:41 PM Ole Holm Nielsen wrote: > On 6/18/19 2:25 PM, Yann Sagon wrote: > > I'm trying to install EasyBuild as user in CentOS 7.6. > > > > I tried this procedure: > > > https://easybuild.readthedocs.io/en/latest/Installatio

[easybuild] Build MRtrix depends on OS liblzma

I'm using: https://gist.github.com/ysagon/4e1b5f66450a467c0d8ec3765d5b456c Any clue? Best -- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau

Re: [easybuild] Build MRtrix depends on OS liblzma

t in case" with no change. Best -- [image: Logo UNIGE] Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch/stic

[easybuild] Failed to compile CUDA 10.1.105 on CentOS7

Dear list, I'm trying to compile fosscuda/2019b on a CentOS7 server using EB 3.9.3 It's failed and here are the relevant debug log: == 2019-07-31 13:55:40,928 easyblock.py:2806 INFO Running method install_step part of step install == 2019-07-31 13:55:40,929 run.py:268 DEBUG run_cmd_qa: Output

TR: [easybuild] Failed to compile CUDA 10.1.105 on CentOS7

Sorry, I forgot to reply to the mailing list. I still have the issue. -Message d'origine- De : Yann Sagon Envoyé : mercredi, 31 juillet 2019 15:13 À : 'Kenneth Hoste' Objet : RE: [easybuild] Failed to compile CUDA 10.1.105 on CentOS7 Dear Kenneth, -Message d'origine- De

RE: TR: [easybuild] Failed to compile CUDA 10.1.105 on CentOS7

Dear Kenneth, > -Message d'origine- > De : Kenneth Hoste > Envoyé : mercredi, 7 août 2019 21:08 > À : Yann Sagon > Cc : easybuild@lists.ugent.be > Objet : Re: TR: [easybuild] Failed to compile CUDA 10.1.105 on CentOS7 > > Dear Yann, > > The problem see

Re: [easybuild] TensorFlow/2.0.0 for foss-2019a-Python-3.7.2 fail with ssl error.

. The Python-3.7.2 for foss-2019a was linked against an EB ssl instead of the one from the system. And this wasn't working for this eb file in particular because the ssl was too recent! I rebuilt Python using system SSL and it's working! Best -- Logo UNIGE Yann Sagon Référent HPC Division du

[easybuild] TensorFlow/2.0.0 for foss-2019a-Python-3.7.2 fail with ssl error.

.py", line 1117, in do_handshake     self._sslobj.do_handshake() ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1056) As far as I guess, Python 3.7.2 is installed without SSL certificates populated. I

[easybuild] easyconfig path for existing module?

Dear list, I'm having the following issue when trying to build cairo. [sagon@node025 openpose] $ eb --configfiles=/opt/cluster/easybuild/dev.cfg cairo-1.16.0-GCCcore-8.3.0.eb == temporary log file in case of crash /tmp/eb-AVpHdo/easybuild-5vTSb6.log ERROR: Failed to process easyconfig

[easybuild] Error sphinx when building TensorFlow 2.0 for fosscuda/2019b

0 requires sphinxcontrib-serializinghtml, which is not installed. pytest 5.1.2 requires wcwidth, which is not installed.  (at easybuild/tools/run.py:529 in parse_cmd_output) Any clue? -- Logo UNIGE Yann Sagon Référent HPC Division du système et des technologies de l'information et de la com

Re: [easybuild] fixed-installdir-naming-scheme

Hello Le 16.12.2019 à 19:09, Åke Sandgren a écrit : On 12/16/19 6:05 PM, Yann Sagon wrote: My $MODULEPATH contains after loading fosscuda/2019b: /opt/ebmodules/all/MPI/GCC/8.3.0/OpenMPI/3.1.4:/opt/ebmodules/all/Compiler/GCC/8.3.0:/opt/ebmodules/all/Compiler/GCCcore/8.3.0 For a standard HMNS

Re: [easybuild] easyconfig path for existing module?

act this is what I was already doing, but when I built pixman, the rights were wrong on repositorypath directory and the eb wasn't written! My bad, problem solved! Thanks Best -- Logo UNIGE Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communicat

[easybuild] fixed-installdir-naming-scheme

Dear list, I'm sorry to bother you again, but it's still not very clear for me if I should turn on or off this option. I'm now using EB 4.1.0. When I went from 3.9.x to 4.0.x I didn't changed this option, thus I had it set to true by default. It seems it was working fine. I'm using

Re: [easybuild] fixed-installdir-naming-scheme

Hello Le 16.12.2019 à 17:41, Mikael Öhman a écrit : Hi Yann, This option only affects the install directory of the *software*, modules are unaffected. So, the completely unrelated problem is that you have not yet loaded in your toolchains before trying to load a software. Nop, it was

Re: [easybuild] Error sphinx when building TensorFlow 2.0 for fosscuda/2019b

Dear Kenneth, Le 17.12.2019 à 15:11, Kenneth Hoste a écrit : Dear Yann, On 17/12/2019 15:06, Yann Sagon wrote: Dear list, at the end of the TensorFlow installation, during the sanity check, it have the following error: == 2019-12-17 12:46:46,834 run.py:219 INFO running cmd: pip --version

[easybuild] Build FSL fail

Dear list, I was happy since a user sees FSL on eb is missing imcp:) The version we had installed on our cluster is quite old, so I took the opportunity to update it, with a version with CUDA support. Yes is see it's still not provided with imcp. Anyway, i'm even not able to install a newer

Re: [easybuild] Build FSL fail

Hello, Le 17.04.2020 à 10:26, Kenneth Hoste a écrit : This looks like a Boost module that was not installed with EasyBuild, or was it? Does it define the $EBROOTBOOST environment variable? If not, that explains why "get_software_root" is failing for Boost... ml show Boost

[easybuild] Python multi_deps and dependencies.

a version for python 2.7.16 and Python 3.7.4? And what is the syntax? Best Yann -- Logo UNIGE Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.uni

Re: [easybuild] Build Biopython-1.75-foss-2019b-Python-2.7.16.eb failed

Hello, please find attached the log. It's from a --try-software-version=1.76 Best Yann Le 01.07.2020 à 17:40, John Dey a écrit : are you getting errors about poetry John Dey j...@fuzzdog.com On Jul 1, 2020, at 8:27 AM, Yann Sagon wrote: Dear list, I'm trying to build Biopython-1.75

[easybuild] Build Biopython-1.75-foss-2019b-Python-2.7.16.eb failed

Dear list, I'm trying to build Biopython-1.75-foss-2019b-Python-2.7.16.eb with EeasyBuild 4.2.1 and it fails with a LOT of errors in the tests (in the log file) and failed with the install step. I tried with version 1.76 which is the latest version for Python 2.7, same error. Is this a

Re: [easybuild] Build Biopython-1.75-foss-2019b-Python-2.7.16.eb failed

Hello, sorry to bother you again about this issue. It's still not working and I don't know if this specific to our instllation or if this eb isn't working. Thanks for any hint. Yann Le 01.07.2020 à 17:57, Yann Sagon a écrit : Hello, please find attached the log. It's from a --try-software

[easybuild] compile a Cython package.

Dear list, I wanted to create an EB file for EMU: http://www.popgen.dk/software/index.php/EMU First of all, the EMU git repo doesn't provide a tag with the latest version, this is why I hardcoded the download path, maybe I can do that in a better way. Second, to install the Python code, I

Re: [easybuild] compile a Cython package.

Hi Kenneth, Le 05.11.2020 à 19:26, Kenneth Hoste a écrit : Dear Yann, On 05/11/2020 17:46, Yann Sagon wrote: to install the Python code, I should execute the following: python setup.py build_ext --inplace The easiest way to achieve this is by changing the installation command via

[easybuild] compile error for R 3.6.2 fosscuda/2019b

* installing *source* package liquidSVM ...\n** package liquidSVM successfu') [sagon@node025 ~] $ view /tmp/eb-57sk42/easybuild-R-3.6.2-20210115.113949.rQKDk.log Details in https://gist.github.com/ysagon/a9f70577ed3e5e6a3f2d388e6c000f5c Thanks for any clue! Best Yann -- Logo UNIGE Yann

Re: [easybuild] CP2K with easybuild

-devel', 'rdma-core-devel') How can I overcome this problem, thanks in advance -- Logo UNIGE Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch

Re: [easybuild] Biopython-1.78-intel-2020a-Python-3.8.2.eb failed : yaff 1.4.2 requires h5py, which is not installed.

and Dynamics of Matter (MPSD) Bldg. 99 (CFEL) Luruper Chaussee 149 22761 Hamburg, Germany -- Logo UNIGE Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.u

Re: [easybuild] -Python-%(pyver)s' should no longer be included in versionsuffix

Logo UNIGE Yann Sagon Référent HPC Division du système et des technologies de l'information et de la communication Université de Genève | 24 rue Général-Dufour Tél 022 379 77 37 | Bureau 151 www.unige.ch/stic <http://www.unige.ch/stic>