Re: [O] another example of org being slow, with some analysis

2015-06-18 Thread Daniel Bausch
Daniel Bausch writes: > I think it actually is not an org-mode problem but depends on how > (count-lines 1 (point)) works, as it is using regex searches for the > line endings. I can imagine that the regex parser for utf-8 can be > inefficient. I just looked again at Eric's profile output. Why

Re: [O] another example of org being slow, with some analysis

2015-06-18 Thread Daniel Bausch
Hi! Nick Dokos writes: > Eric S Fraga writes: > > >> The output of the ELP profiler is here: >> >> ... >> org-goto-line 104 10.761145733 0.1034725551 >> .. >> org-current-line66 6.8422078910 0.1036698165 >> ... > > I find these two difficult to exp

Re: [O] searching for csv utilities

2015-06-18 Thread Jude DaShiell
I spent time looking for vmode in info org using a regular expression search and couldn't find it either. That capability is probably in R though it may be under another name. I have emacs-ess package and R installed on this system though haven't used them yet. I also found sbcl so if it get

Re: [O] Links

2015-06-18 Thread Suvayu Ali
On Wed, Jun 17, 2015 at 11:47:38AM +0200, Nicolas Goaziou wrote: [... description of the issues trimmed ...] > > Although, you still have to handle the ambiguous case for existing Org > > files. Unless this double maintenance is cumbersome, I would vote for > > introducing such a scheme. > > T

Re: [O] Column formats for columnview dynamic block

2015-06-18 Thread Joon Ro
I solved this with providing 'printf' format specifiers (http://orgmode.org/org.html#Formula-syntax-for-Calc). I wasn't aware of the the formatting capability - awesome.From: joon...@outlook.com To: emacs-orgmode@gnu.org Date: Thu, 18 Jun 2015 15:27:33 -0700 Subject: [O] Column formats for colum

Re: [O] org-cite and org-citeproc

2015-06-18 Thread Richard Lawrence
Hi Matt, Matt Price writes: > I'm wondering what kind of work is required to make use of org-cite and > org-citeproc at present. In particular, I'm wondering what kinds of changes > I'll need to make to my current setup, and whether it's worthwhile to use > my ultra-slow coding skills to create

[O] Column formats for columnview dynamic block

2015-06-18 Thread Joon Ro
Hi, I use columnview dynamic block to generate a table so I can export it.However, it does not obey the #+COLUMNS: settings that I have in the org file.Is there any way to make it obey the settings? I'm exporting the table for LaTeX and I want to control the number of digits that it shows. Chee

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Andreas Leha
Hi Chuck, [snip: all context about workflows for R projects] > For example, the bioConductor package geneRxCluster [1] comes from an > Org mode document that contains the C and R code as src blocks and a > subtree with the vignette (Using geneRxCluster) that analyzes data, > produces graphics, et

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Rasmus
Eric S Fraga writes: > with this patch, exporting to koma-letter doesn't work for me. I've not > investigated properly yet but thought I'd give you a heads up on > this. Thanks. I don't really know where exactly it breaks with a minimal example. It works on my PC. Anyway, this patch adds o

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Charles C. Berry
On Thu, 18 Jun 2015, Rainer M Krug wrote: "Charles C. Berry" writes: On Wed, 17 Jun 2015, William Denton wrote: On 17 June 2015, Xebar Saram wrote: I do alot of modeling work that involves using huge datasets and run process intensive R processes (such as complex mixed models, Gamms etc).

Re: [O] another example of org being slow, with some analysis

2015-06-18 Thread Ivan Andrus
I’m jumping into the middle of the thread, but have you tried (setq cache-long-scans nil) That solved some performance issues for me. I can’t remember where I got the advice. -Ivan On Jun 18, 2015, at 10:28 AM, Eric S Fraga wrote: Hello, there have been a few threads recently mentioning

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Rasmus
Marcin Borkowski writes: > On 2015-06-18, at 18:02, Kaushal wrote: > >> A quick google search comes up this these: >> >> http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex >> http://tex.stackexchange.com/questions/4268/inputenc-error-unicode

Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
Hello, now I've narrowed the org file(s) down to --- snip --- #+TITLE: Frequently Asked Questions #+name: docinfo #+begin_src elisp :exports none (let ((props (org-export-get-environment))) (concat "#+LaTeX_HEADER: \\newcommand{\\myTitle}{" (org-element-interpret-data

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Charles C. Berry
On Thu, 18 Jun 2015, Xebar Saram wrote: Thx Chuck this sounds great. could you perhaps point us to some documentation on this, or perhpas consider sharing a detailed overview of your workflow? this seems it could really fit my needs. Start with Sections 1-3 of ox-ravel.org for basic info. Th

Re: [O] helm-bibtex questions

2015-06-18 Thread Titus von der Malsburg
On 2015-06-18 Thu 04:32, Xebar Saram wrote: > Hi Titus and thx so much for the answers! > > i will in the future use the github page to make requests. > > "The number of matches will be displayed in the mode line. " > > i see that now thx! :) the problem was(is) that its colored black on my > blac

Re: [O] another example of org being slow, with some analysis

2015-06-18 Thread Nick Dokos
Eric S Fraga writes: > The output of the ELP profiler is here: > > ... > org-goto-line 104 10.761145733 0.1034725551 > .. > org-current-line66 6.8422078910 0.1036698165 > ... I find these two difficult to explain: they account for the vast majority

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Marcin Borkowski
On 2015-06-18, at 18:02, Kaushal wrote: > A quick google search comes up this these: > > http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex > http://tex.stackexchange.com/questions/4268/inputenc-error-unicode-char-u8-error-while-trying-to-wr

Re: [O] Bug: Org timeline does not work [8.3beta (release_8.3beta-1229-ge900eb @ /home/dominik/.emacs.d/org-mode/lisp/)]

2015-06-18 Thread Nick Dokos
Dominik Schrempf writes: > Hello, > > if I want to create a timeline of an arbritrary org file, I get the following > error: > > Symbol's function is void: org-timeline > This function is defined in org-agenda.el[c]. So the question is: is org-agenda loaded? If (featurep 'org-agenda) evaluate

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Steven Arntson
Thank you very much! -steven Kaushal writes: > A quick google search comes up this these: > > http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex > http://tex.stackexchange.com/questions/4268/inputenc-error-unicode-char-u8-error-while-trying

[O] another example of org being slow, with some analysis

2015-06-18 Thread Eric S Fraga
Hello, there have been a few threads recently mentioning poor performance. Although some of these have been resolved (e.g. the use of =linum=), I wonder if I could add a data point. I have a medium (for me) sized (385 kB) org file with all of my "tasks" in a date-tree structure. One of the task

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Kaushal
A quick google search comes up this these: http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex http://tex.stackexchange.com/questions/4268/inputenc-error-unicode-char-u8-error-while-trying-to-write-a-degree-symbol Based on those solutions, may

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Myles English
Marcin Borkowski writes: > On 2015-06-18, at 05:19, Kaushal wrote: > >> The solution is simpler than you think; you simply need to add ZERO WIDTH >> SPACE unicode char between / and " (beginning) and " and / (end). Thanks for your detailed answer Kaushal. I hadn't heard of a 'zero length space

Re: [O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Rasmus
Hi, What is your WM/DM? If it's Gnome that might be the reason. There's an thread a couple of weeks back with a workaround for Gnome. Rasmus -- C is for Cookie

Re: [O] current status of citation syntax discussion

2015-06-18 Thread Richard Lawrence
Hi Rasmus and all, Rasmus writes: > Matt Price writes: > >> Am just wondering what the current status is of the work that was being >> done earlier this year on improved citation support in org. Has an >> official syntax been settled on? > > AFAIK: No. Some people wanted something like [cite/

Re: [O] Why navigating in Org mode is so slow in overview mode?

2015-06-18 Thread Qiang Fang
I found it linum mode that slows all things down. Thank you for the help! Qiang On Wed, Jun 17, 2015 at 3:51 AM, Nicolas Goaziou wrote: > Hello, > > Q writes: > > > I am view this file > > http://doc.norang.ca/org-mode.org > > > > It's a prettey long document, when it all folded up, navigating

[O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Sven Ehret
Hi List, since I have switched distributions from Mint to Arch, I have lost one of my most-loved Org features: Export to HTML and open. When I choose to export something, I type C-c C-e C-s h o as I usually do. But now the HTML opens in my agenda buffer, and not in my browser anymore. When I ri

[O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Sven Ehret
Hi List, since I have switched distributions from Mint to Arch, I have lost one of my most-loved Org features: Export to HTML and open. When I choose to export something, I type C-c C-e C-s h o as I usually do. But now the HTML opens in my agenda buffer, and not in my browser anymore. When I ri

[O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Sven Ehret
Hi List, since I have switched distributions from Mint to Arch, I have lost one of my most-loved Org features: Export to HTML and open. When I choose to export something, I type C-c C-e C-s h o as I usually do. But now the HTML opens in my agenda buffer, and not in my browser anymore. When I ri

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Alan Schmitt
On 2015-06-18 13:52, Xebar Saram writes: > thx again Alan > > i do get an error if i eval (org-capture nil "t") > the error is: > > Debugger entered--Lisp error: (error "No capture template referred to by \"t\" > keys") Yes: you need to define a capture template with that key. Here are my captur

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Kaushal
Nope, it doesn't :) Screencap of pdf export: http://i.imgur.com/KuLHKNd.png On Thu, Jun 18, 2015 at 3:54 AM Marcin Borkowski wrote: > > On 2015-06-18, at 05:19, Kaushal wrote: > > > The solution is simpler than you think; you simply need to add ZERO WIDTH > > SPACE unicode char between / and

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Detlef Steuer
Am Thu, 18 Jun 2015 15:25:57 +0200 schrieb Rainer M Krug : > In the spirit of reproducibility, I would at least suggest to > introduce a function which inserts an argument > > #+ORG_FILE_VERSION: TheActualOrgVersionProbablyWithGitHash > > if it does not exist, and if it exist, updates it to the

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Nicolas Goaziou
Hello, Rasmus writes: > Nicolas: are there any of the keywords in the patch that shouldn't be > parsed? I don't think so. Notwithstanding AUTHOR, which clearly is an overlook (ox.el parses it), I wonder if it is a net gain, tho. In my experience, these values are mostly constituted of LaTeX co

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Nicolas Goaziou
Rainer M Krug writes: > Nicolas Goaziou writes: > >> Rainer M Krug writes: >> >>> Yes - that's true. But who of the longer org users reads the manual of >>> features they use regularly? >> >> Ah well. I turned 3 `mapcar' calls into a single one. It should, >> hopefully improve speed in your cas

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Rainer M Krug
Nicolas Goaziou writes: > Rainer M Krug writes: > >> Yes - that's true. But who of the longer org users reads the manual of >> features they use regularly? > > Ah well. I turned 3 `mapcar' calls into a single one. It should, > hopefully improve speed in your case (could you confirm it). Hm - it

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Rainer M Krug
"Charles C. Berry" writes: > On Wed, 17 Jun 2015, William Denton wrote: > >> On 17 June 2015, Xebar Saram wrote: >> >>> I do alot of modeling work that involves using huge datasets and run >>> process intensive R processes (such as complex mixed models, Gamms etc). in >>> R studio all works well

Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
On Thu, 18 Jun 2015 09:55:16 +0200 Nicolas Goaziou wrote: Hello, thank you very much for your effort! I boiled it down further and now don't even need an #include to see this issues. Using the same .emacs as in the earlier mail and having three org files 1.org, 2.org, and 3.org all having the

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Xebar Saram
thx again Alan i do get an error if i eval (org-capture nil "t") the error is: Debugger entered--Lisp error: (error "No capture template referred to by \"t\" keys") signal(error ("No capture template referred to by \"t\" keys")) error("No capture template referred to by \"%s\" keys" "t") or

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Alan Schmitt
On 2015-06-18 13:16, Xebar Saram writes: > Hi Alan > > your code seems very intersting and i have been looking for something like > this for a while. yet for me it opens a new frame without org capture. i use > linux (arch) and put in the following code. please note that when i evaled > your code

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Xebar Saram
Thx Chuck this sounds great. could you perhaps point us to some documentation on this, or perhpas consider sharing a detailed overview of your workflow? this seems it could really fit my needs. thx so much in advance Z On Thu, Jun 18, 2015 at 6:17 AM, Charles C. Berry wrote: > On Wed, 17 Jun

Re: [O] helm-bibtex questions

2015-06-18 Thread Xebar Saram
Hi Titus and thx so much for the answers! i will in the future use the github page to make requests. "The number of matches will be displayed in the mode line. " i see that now thx! :) the problem was(is) that its colored black on my black modline BG which makes it invisible ;-) i assume thats a

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Xebar Saram
Hi Alan your code seems very intersting and i have been looking for something like this for a while. yet for me it opens a new frame without org capture. i use linux (arch) and put in the following code. please note that when i evaled your code it said: `flet' is an obsolete macro (as of 24.3); us

Re: [O] org-babel-lob-ingest and debug-init

2015-06-18 Thread Andreas Leha
Hi, Nicolas Goaziou writes: > Hello, > > Andreas Leha writes: > >> Andreas Leha writes: >>> Hi all, >>> >>> I have two lines like this in my .emacs: >>> >>> (org-babel-lob-ingest "~/path/to/library-of-babel.org") >>> (org-babel-lob-ingest "~/path/to/custom-library-of-babel.org") >>> >>> >>> All

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Eric S Fraga
On Thursday, 18 Jun 2015 at 10:47, Rasmus wrote: [...] > Right. #+author is not parsed. In the patch I enable parsing on this and > others. > > Nicolas: are there any of the keywords in the patch that shouldn't be > parsed? > > Also, I left out FROM_ADDRESS as I remember it interprets newlines

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Rasmus
Eric S Fraga writes: > On Thursday, 18 Jun 2015 at 00:03, Nicolas Goaziou wrote: > > [...] > >> I cannot reproduce it. koma-letter back-ends explicitly allows latex >> export snippets, e.g., >> >> #+title: @@latex:\something@@ >> >> produces the expected \something. > > Ummm, I thought I was go

[O] Bug: Org timeline does not work [8.3beta (release_8.3beta-1229-ge900eb @ /home/dominik/.emacs.d/org-mode/lisp/)]

2015-06-18 Thread Dominik Schrempf
Hello, if I want to create a timeline of an arbritrary org file, I get the following error: Symbol's function is void: org-timeline Best wishes, Dominik Emacs : GNU Emacs 24.5.1 (x86_64-unknown-linux-gnu, GTK+ Version 3.16.2) of 2015-04-20 on bitzer.hoetzel.info Package: Org-mode version 8.3b

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Eric S Fraga
On Wednesday, 17 Jun 2015 at 16:41, Subhan Michael Tindall wrote: > Quickie patch, maybe I'll work it up as per comments later & submit > but this will fix things for you (no guarantees, not widely tested) Thanks for this. Works okay if there is more than one window which is a step in the right d

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Eric S Fraga
On Thursday, 18 Jun 2015 at 00:03, Nicolas Goaziou wrote: [...] > I cannot reproduce it. koma-letter back-ends explicitly allows latex > export snippets, e.g., > > #+title: @@latex:\something@@ > > produces the expected \something. Ummm, I thought I was going crazy as, for once, I had tested u

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Nicolas Goaziou
Rainer M Krug writes: > Yes - that's true. But who of the longer org users reads the manual of > features they use regularly? Ah well. I turned 3 `mapcar' calls into a single one. It should, hopefully improve speed in your case (could you confirm it). Also, I suggest to signal the deprecation i

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Marcin Borkowski
On 2015-06-18, at 05:19, Kaushal wrote: > The solution is simpler than you think; you simply need to add ZERO WIDTH > SPACE unicode char between / and " (beginning) and " and / (end). Won't it break the LaTeX export? Best, -- Marcin Borkowski http://octd.wmi.amu.edu.pl/en/Marcin_Borkowski Fa

Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Nicolas Goaziou
Hello, Robert Klein writes: > On Thu, 18 Jun 2015 09:15:50 +0200 > Robert Klein wrote: > > >> The file exported first exports Ok, the others don't. > > Sorry, the file _published_ first exports Ok, the others not. > > For the ECM I export w/ org-publish-project. Thanks for the ECM. I will in

Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
On Thu, 18 Jun 2015 09:15:50 +0200 Robert Klein wrote: > The file exported first exports Ok, the others don't. Sorry, the file _published_ first exports Ok, the others not. For the ECM I export w/ org-publish-project. Best regards Robert

[O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
Attached an ECM: .femacs is the .emacs used. The files 1.org, 2.org, and 3.org are in the directory ~/ot mpip-settings.org is in ~/ot/include The file exported first exports Ok, the others don't. A diff of the export for the ECM (3.org exported Ok, 2.org and 1.org not): --- snip --- --- 3.tex