[Orgmode] Fixing slowness of following Gnus links to IMAP articles (was: Behavior of Gnus when called from an hyperlink)

[Tassilo Horn]

Hi Sébastien,

I'm trying to add a workaround to org-gnus.el which should save the
slowness of querying the IMAP server by looking up the article number in
the group's .overview file.  But since I don't have nnimap groups, we
have to play some question & answer game. ;-)

Please apply this patch and set
`org-gnus-nnimap-query-article-no-from-file' to t.

--8<---cut here---start->8---
diff --git a/lisp/org-gnus.el b/lisp/org-gnus.el
index 7ec305b..118f088 100644
--- a/lisp/org-gnus.el
+++ b/lisp/org-gnus.el
@@ -55,6 +55,16 @@ negates this setting for the duration of the command."
   :group 'org-link-store
   :type 'boolean)
 
+(defcustom org-gnus-nnimap-query-article-no-from-file nil
+  "If non-nil, `org-gnus-follow-link' will try to translate
+Message-Ids to article numbers by querying the .overview file.
+Normally, this translation is done by querying the IMAP server,
+which is usually very fast.  Unfortunately, some (maybe badly
+configured) IMAP servers don't support this operation quickly.
+So if following a link to a Gnus article takes ages, try setting
+this variable to `t'."
+  :group 'org-link-store
+  :type 'boolean)
 
 ;; Install the link type
 (org-add-link-type "gnus" 'org-gnus-open)
@@ -173,7 +183,11 @@ If `org-store-link' was called with a prefix arg the 
meaning of
   (cond ((and group article)
 (gnus-activate-group group t)
 (condition-case nil
-(let ((backend (car (gnus-find-method-for-group group
+(let* ((method (gnus-find-method-for-group group))
+   (backend (car method))
+   (server (cadr method)))
+  (message "method = %s\ngroup = %s\nbackend = %s\nserver = %s"
+   method group backend server)
   (cond
((eq backend 'nndoc)
 (if (gnus-group-read-group t nil group)
@@ -183,6 +197,12 @@ If `org-store-link' was called with a prefix arg the 
meaning of
(t
 (let ((articles 1)
   group-opened)
+  ;; work arround IMAP servers that perform badly in
+  ;; SEARCH commands.
+  (when (and (eq backend 'nnimap)
+ org-gnus-nnimap-query-article-no-from-file)
+(let ((headers (nnimap-retrieve-headers-from-file )))
+  (message "headers = %s" headers)))
   (while (and (not group-opened)
   ;; stop on integer overflows
   (> articles 0))
--8<---cut here---end--->8---

Then follow some org link to a message in a nnimap group.  This will be
slow as usual, but produce some output in *Messages* that I need to go
ahead.  In that buffer, there should be 4 key-value pairs " =
".  Please poste these here.

Bye,
Tassilo


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[Orgmode] Re: [babel] help debugging org-babel-execute-buffer

[Austin Frank]

On Tue, Jul 27 2010, Nick Dokos wrote:

> Have you tried C-c C-c on each source block in the buffer? If one (or
> more) fails, you know what to do.

I went back and named all of my source blocks so that I would get some
debugging information from the *Messages* buffer.  The error is thrown
when org-babel-execute-buffer has executed the last block in the file.
The error is not thrown when I evaluate any single block individually.

I'll try more of your suggestions later.

Thanks,
/au

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Re: [Orgmode] [babel] help debugging org-babel-execute-buffer

[Nick Dokos]

Austin Frank  wrote:

> I have a document that always throws an error when I call
> org-babel-execute-buffer.  I'd guess that there's one particular block
> that is to blame, but I can't tell which block babel is in at the point
> when the error is thrown.
> 
> The error is:
> 
> #v+
> Debugger entered--Lisp error: (invalid-function org-save-outline-visibility)
>   org-save-outline-visibility(t 1 nil nil)
>   org-babel-execute-buffer(nil)
>   call-interactively(org-babel-execute-buffer nil nil)
> #v-
> 
> Looking at the macro for org-save-outline-visibility, I think the
> problem has to do with the last two arguments being passed in as nil
> nil.  I don't, however, know how this is happening.
> 
> I know that I probably haven't given enough information to actually
> diagnose this bug.  Can anyone give me a hand on what my next debugging
> step should be for this problem?
> 

Have you tried C-c C-c on each source block in the buffer? If one (or more)
fails, you know what to do.

If they all work fine, then I'd do a binary chop to get a minimal
example.  Then edebug org-babel-execute-buffer on the minimal example
(if the macro causes problems with edebug, define a new function,
org-babel-execute-buffer-do-not-save-outline-visibility, which does not
invoke the macro and debug that: if that works, then there is probably
some funky interaction with the macro.) In each iteration of the loop,
record the beginning of the match and the end of the match: that'll tell
you which block is being executed.

The simplest solution of course is to send the whole thing to Eric
S. :-) [1]

HTH,
Nick

[1] http://www.snopes.com/college/exam/barometer.asp



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[Orgmode] [babel] help debugging org-babel-execute-buffer

[Austin Frank]

Hello!

I have a document that always throws an error when I call
org-babel-execute-buffer.  I'd guess that there's one particular block
that is to blame, but I can't tell which block babel is in at the point
when the error is thrown.

The error is:

#v+
Debugger entered--Lisp error: (invalid-function org-save-outline-visibility)
  org-save-outline-visibility(t 1 nil nil)
  org-babel-execute-buffer(nil)
  call-interactively(org-babel-execute-buffer nil nil)
#v-

Looking at the macro for org-save-outline-visibility, I think the
problem has to do with the last two arguments being passed in as nil
nil.  I don't, however, know how this is happening.

I know that I probably haven't given enough information to actually
diagnose this bug.  Can anyone give me a hand on what my next debugging
step should be for this problem?

Thanks,
/au

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[Orgmode] [PATCH] org-depend only blocks null->TODO state change

[Paul Sexton]

In agenda view, tasks which are supposed to be blocked using org-depend's
:BLOCKER: property, are not actually blocked and do not show up dimmed.

This is because of a logic error in 'org-depend-block-undo', hopefully 
fixed below.

index eb38aa0..84fa1a7 100644
--- a/d:/paul/dotemacs/site-lisp/org/contrib/lisp/org-depend.el
+++ b/d:/paul/dotemacs/site-lisp/org/contrib/lisp/org-depend-new.el
@@ -224,12 +224,13 @@ this ID property, that entry is also checked."
 blocker blockers bl p1
 (proceed-p
  (catch 'return
-   (unless (eq type 'todo-state-change)
- ;; We are not handling this kind of change
- (throw 'return t))
-   (unless (and (not from) (member to org-not-done-keywords))
- ;; This is not a change from nothing to TODO, ignore it
- (throw 'return t))
+;; If this is not a todo state change, or if this entry is 
+;; DONE, do not block
+(when (or (not (eq type 'todo-state-change))
+  (member from (cons 'done org-done-keywords))
+  (member to (cons 'todo org-not-done-keywords))
+  (not to))
+  (throw 'return t))

;; OK, the plan is to switch from nothing to TODO
;; Lets see if we will allow it.  Find the BLOCKER property



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[Orgmode] .ods opens file in Emacs, not OpenOffice

[C64 Whiz]

Hello,

I've searched for an answer but can't find a simple one.  I have an
OpenOffice document (.ods) I'd like to link to in my .org files.  So I have
the following syntax:

  [[file:c:/mydata/myfile.ods][File Description]]

When I click on the link in OrgMode, Emacs opens the file and not
OpenOffice.  Yet, when I'm in file explorer (yes, Windows), double clicking
the file does open up Open Office.  So I know the association is there.

I know there is a variable called 'org-file-apps, but I thought the file
system was supposed to handle any extension not known my OrgMode?  If I do
need 'org-file-apps, please provide an example where I may *add* to the list
rather then re-defining the existing list.  I'd hate to re-do "associations"
OrgMode already made.

Thanks!

--C64Whiz
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Re: [Orgmode] word count checklist?

[Eric Schulte]

The following org-mode file uses a Babel code block to return the ratio
of the number of words in the current buffer against the word-goal
variable as a percent.

Note that it doesn't take into account the words used in the code block,
so that may be worth adding to the word-goal, or possibly something
fancier could be done, like pushing the code block out into the Library
of Babel, and adding a grep call to the shell script to remove the
#+call line from the file before passing it to wc.

Best -- Eric

--8<---cut here---start->8---
* return % num-words/word-goal

Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do
eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enimad
minim veniam, quis nostrud exercitation ullamco laboris nisi ut
aliquip ex ea commodo consequat. Duis aute irure dolor in
reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla
pariatur. Excepteur sint occaecat cupidatat non proident, sunt in
culpa qui officia deserunt mollit anim id est laborum.

#+results: word-goal
: 200

#+begin_src sh :var file=(buffer-file-name) :var goal=word-goal
  echo "`wc $file |awk '{print $2}'`00 / $goal"|bc
#+end_src

#+results:
: 47
--8<---cut here---end--->8---

 writes:

> Hey guys,
>
> is it possible to to define a number of words and have a
> checklist-type progress-monitor (/ or %) tell you how close
> you are to reaching the number?
>
> Just curious--it would come in handy...

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Re: [Orgmode] Installation - no way

[Russell Adams]

Lars,

Org ships with Emacs, even for Windows.

Go here and get the latest binary zip file:
http://ftp.gnu.org/gnu/emacs/windows/

It comes with a very basic Windows installer, after you install you
should launch Emacs with the "RunEmacs.exe" file.

You can also associate RunEmacs as the program for all files ending in
.org.

When you launch Emacs, open a file using the menu, then type:

Alt-x org-mode 

Then enjoy!

I'd suggest you do some reading on basic Emacs tutorials, because Org
is an addon to Emacs and you'll want to become proficient ASAP. Then
you can start to appreciate the magic of Org.

Don't let it intimidate you, Org is suitable for all levels of
computer users. Customization can be more difficult than a WYSIWYG
app, but it works out of the box.

Good luck!

On Mon, Jul 26, 2010 at 11:48:51AM +0200, Lars Labryga wrote:
> Hi,
> 
> I?m totally fascinated by the possibilities of org-mode! But obviously I
> lack computer knowledge to install it. Please help! I want to install
> org-mode on windows xp and later on windows 7. Up to now, I don?t use Emacs.
> 
> Where can I find a tutorial or in which way can I get enough knowledge to
> understand the Installation and Activation part of the manual? Preferably,
> but not necessarily in german.
> 
> Thanks so much for a (quick) reply, I?m really looking forward to it.
> 
> Best regards,
> 
> Lars Labryga

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[Orgmode] word count checklist?

[scrawler]

Hey guys,

is it possible to to define a number of words and have a
checklist-type progress-monitor (/ or %) tell you how close
you are to reaching the number?

Just curious--it would come in handy...

-- 

-tom

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[Orgmode] Installation - no way

[Lars Labryga]

Hi,

I´m totally fascinated by the possibilities of org-mode! But obviously I
lack computer knowledge to install it. Please help! I want to install
org-mode on windows xp and later on windows 7. Up to now, I don´t use Emacs.

Where can I find a tutorial or in which way can I get enough knowledge to
understand the Installation and Activation part of the manual? Preferably,
but not necessarily in german.

Thanks so much for a (quick) reply, I´m really looking forward to it.

Best regards,

Lars Labryga
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Re: [Orgmode] Email from org?

[Eric Schulte]

See http://orgmode.org/worg/org-contrib/org-mime.php for information on
exporting Org-mode documents to email, and on using Org-mode syntax to
compose email.

Best -- Eric

Ethan Ligon  writes:

> Over the last three years my projects and daily workflow have come to
> depend more and more on org-mode.  A few months ago I took the step of
> composing important email as items in an org-file; the heading became
> the subject of the email; replies could then fill in the hierarchy
> under the heading (reproducing something like threads).
>
> The problem is that the methods I've used to send the message
> composed in org-mode and then to assemble the responses have been
> entirely crude and unsatisfactory.  There has to be a better way.  In
> fact, given my past experience with org-mode, there probably *is* a
> better way and I've simply overlooked it.
>
> Vague ideas that have occurred to me:
>
>  - Sending the email might be something like exporting it to smtp?
>  - Could org-protocol be useful for acquiring responses?
>
> Thoughts?
> -Ethan
>
>
>
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[Orgmode] Re: Email from org?

[BKnoth]

On 7/26/2010 12:13 PM, Ethan Ligon wrote:

Over the last three years my projects and daily workflow have come to
depend more and more on org-mode.  A few months ago I took the step of
composing important email as items in an org-file; the heading became
the subject of the email; replies could then fill in the hierarchy
under the heading (reproducing something like threads).

The problem is that the methods I've used to send the message
composed in org-mode and then to assemble the responses have been
entirely crude and unsatisfactory.  There has to be a better way.  In
fact, given my past experience with org-mode, there probably *is* a
better way and I've simply overlooked it.

Vague ideas that have occurred to me:

  - Sending the email might be something like exporting it to smtp?
  - Could org-protocol be useful for acquiring responses?

Thoughts?
-Ethan



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I got org-mode to send me reminders before appointments via email. I 
wrote it up and put it on my blog, here:


http://myrealtestblog.blogspot.com/2009/12/emailing-alert-before-event-scheduled.html

- Bruce



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Re: [Orgmode] Email from org?

[Thomas S. Dye]

Aloha Ethan,

You might want to check out org-mime and the discussion about it  
you'll find in the mailing list archive.  I can verify that this works  
nicely with gnus, though I haven't been able to wean myself from my  
old email habits and use it full time.


All the best,
Tom

On Jul 26, 2010, at 9:13 AM, Ethan Ligon wrote:


Over the last three years my projects and daily workflow have come to
depend more and more on org-mode.  A few months ago I took the step of
composing important email as items in an org-file; the heading became
the subject of the email; replies could then fill in the hierarchy
under the heading (reproducing something like threads).

The problem is that the methods I've used to send the message
composed in org-mode and then to assemble the responses have been
entirely crude and unsatisfactory.  There has to be a better way.  In
fact, given my past experience with org-mode, there probably *is* a
better way and I've simply overlooked it.

Vague ideas that have occurred to me:

- Sending the email might be something like exporting it to smtp?
- Could org-protocol be useful for acquiring responses?

Thoughts?
-Ethan



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[Orgmode] Daily Debian Builds

[Mark A. Hershberger]

Using Launchpad's beta “daily build” service, I've made packages of
org-mode and emacs available here:
https://code.launchpad.net/~org-mode/+archive/daily-ppa

Launchpad is still working out the kinks, but it should be able to
provide this pretty consistently for Ubuntu Lucid (which, I think, will
work on Debian).

If you try it, let me know what your experience is so I can improve it.

Mark.

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Embrace Ignorance.  Just don't get too attached.

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[Orgmode] Email from org?

[Ethan Ligon]

Over the last three years my projects and daily workflow have come to
depend more and more on org-mode.  A few months ago I took the step of
composing important email as items in an org-file; the heading became
the subject of the email; replies could then fill in the hierarchy
under the heading (reproducing something like threads).

The problem is that the methods I've used to send the message
composed in org-mode and then to assemble the responses have been
entirely crude and unsatisfactory.  There has to be a better way.  In
fact, given my past experience with org-mode, there probably *is* a
better way and I've simply overlooked it.

Vague ideas that have occurred to me:

 - Sending the email might be something like exporting it to smtp?
 - Could org-protocol be useful for acquiring responses?

Thoughts?
-Ethan



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[Orgmode] Re: Composing letters using org-mode and scrlttr2

[Jambunathan K]

With reference to my earlier post,
(http://lists.gnu.org/archive/html/emacs-orgmode/2010-07/msg01060.html)

I would like to add the following clarification.


> #+LaTeX_CLASS_OPTIONS: 
> [a4paper,parskip=full,backaddress=off,foldmarks=off,jambu]

All the styling and context-specific information comes from 'jambu' in
the LaTeX_CLASS_OPTIONS line. In this case, jambu is 'an lco file'
that in turn loads DIN.lco. (The later file comes with the standard
distribution)

The patch as such doesn't bother with the styling elements but merely
transforms content from org to scrlttr2 form. To illustrate,

* subject
  Composing letters using org-mode and scrlttr2
  
section in org gets transformed in the final letter into the following
TeX form.

\setkomavar{subject} {
\label{sec-2}
  Sub:- Composing letters using org-mode and scrlttr2
  
}

This is done as part of org-scrlttr2-sectioning defun in my earlier
patch.

Jambunathan K.

---> Input Org file <---

#+TITLE: 
#+AUTHOR:
#+EMAIL:
#+LANGUAGE:
#+TEXT:

#+LaTeX_CLASS_OPTIONS: 
[a4paper,fromalign=right,pagenumber=headmiddle,parskip=full,fromphone=true,fromfax=false,fromrule=false,fromemail=true,subject=afteropening,backaddress=off,foldmarks=off,jambu]

#+OPTIONS: toc:nil 
#+LaTeX_CLASS: scrlttr2

* letter
  Org Mode User Group \\
  World Wide Web
  
* subject
  Sub:- Composing letters using org-mode and scrlttr2
  
* opening
  Dear Org Mode Users

* body
  Lately, I have been composing formal letters using KOMA script's
  sscrlttr2. I found it convenient to have them composed from within
  org-mode. 
  
  I am enclosing the initial set of changes needed to compose some
  simple letters as this one.
  
  The only change that is too 'intrusive' seems to be an extra newline
  which gets added immediately after the emission of labels. These
  extra newlines trigger syntax errors in the closing{} and encl{}
  directives.
  
  I think rest of the changes could be squeeed in through existing
  hooks.

#+BEGIN_EXAMPLE
- (insert (mapconcat (lambda (l) (format "\\label{%s}" l))
-label-list "\n") "\n"))
+   (insert (mapconcat (lambda (l) (format "\\label{%s}" l))
+  label-list "\n")))
#+END_EXAMPLE 
  
  If there is some general interest, I could work on making a formal
  patch available.

* closing
  Yours Truly

* encl
  Patch from my work-area.

---> Output Tex file <---  

% Created 2010-07-26 Mon 23:19
\documentclass[a4paper,fromalign=right,pagenumber=headmiddle,parskip=full,fromphone=true,fromfax=false,fromrule=false,fromemail=true,subject=afteropening,backaddress=off,foldmarks=off,jambu]{scrlttr2}
\usepackage[latin1]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{t1enc}
\usepackage{textcomp}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{pdfpages}
\providecommand{\alert}[1]{\textbf{#1}}

\title{}
\author{}
\date{26 July 2010}

\begin{document}

\begin{letter} {
\label{sec-1}
  Org Mode User Group \\
  World Wide Web
  
}

\setkomavar{subject} {
\label{sec-2}
  Sub:- Composing letters using org-mode and scrlttr2
  
}

\opening {
\label{sec-3}
  Dear Org Mode Users
}


\label{sec-4}
  Lately, I have been composing formal letters using KOMA script's
  sscrlttr2. I found it convenient to have them composed from within
  org-mode. 
  
  I am enclosing the initial set of changes needed to compose some
  simple letters as this one.
  
  The only change that is too `intrusive' seems to be an extra newline
  which gets added immediately after the emission of labels. These
  extra newlines trigger syntax errors in the closing\{\} and encl\{\}
  directives.
  
  I think rest of the changes could be squeeed in through existing
  hooks.

\begin{verbatim}
- (insert (mapconcat (lambda (l) (format "\\label{%s}" l))
-label-list "\n") "\n"))
+   (insert (mapconcat (lambda (l) (format "\\label{%s}" l))
+  label-list "\n")))
\end{verbatim}
  
  If there is some general interest, I could work on making a formal
  patch available.



\closing {
\label{sec-5}
  Yours Truly
}

\encl {
\label{sec-6}
  Patch from my work-area.
}

\end{letter}
\end{document}

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[Orgmode] Re: Behavior of Gnus when called from an hyperlink

[Tassilo Horn]

Tassilo Horn  writes:

> Well, as a last resort that could be done, but I'm in favor of
> delegating the issue to the Gnus devs.  The problem will bite you in
> normal Gnus usage, too.  (Ok, at least when searching for/restricting
> with a given message id.  Scoring is also a candidate using
> message-ids.)
>
> Do you want to raise a question at d...@gnus.org, or should I do this
> evening?

Ok, I reported the issue on the ding list.

  Message-Id: <201007262042.04971.tass...@member.fsf.org>
  Gmane: http://article.gmane.org/gmane.emacs.gnus.general/69829

Bye,
Tassilo


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[Orgmode] avoiding source block prompts

[Charles C. Berry]

I think this is a new feature or perhaps a bug, which I noticed when 
upgrading to version 7.01.


The newline and the two prompts '> >' in the results block below did not 
show up in the earlier versions I used.


If this is a 'feature', is there a clean way to change this behavior?

If this is a bug, is there a simple patch to fix it?

#+begin_src R :session :results output
### create x
x <- rnorm(1)
### now print the result
x
#+end_src

#+results:
:
: > > [1] 2.186783


What I would have liked is to have something that looks like this:

#+results:
: [1] 2.186783

Thanks,

Chuck


Charles C. Berry(858) 534-2098
Dept of Family/Preventive Medicine
E mailto:cbe...@tajo.ucsd.edu   UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901



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Re: [Orgmode] Re: Composing letters using org-mode and scrlttr2

[John Hendy]

There's a pretty nice example here (seemed like some had not seen
examples?): http://gpl.coulmann.de/scrlttr2.html

I think it looks smashing.

On Mon, Jul 26, 2010 at 10:54 AM, Bernt Hansen  wrote:

> Jambunathan K  writes:
>
> >   If there is some general interest, I could work on making a formal
> >   patch available.
>
> Hi Jambunathan,
>
> I would also be interested in generating business quality letters from
> org-mode.  Currently I'm falling back to other applications to
> accomplish this efficiently.
>
> Regards,
> Bernt
>
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[Orgmode] Re: Composing letters using org-mode and scrlttr2

[Bernt Hansen]

Jambunathan K  writes:

>   If there is some general interest, I could work on making a formal
>   patch available.

Hi Jambunathan,

I would also be interested in generating business quality letters from
org-mode.  Currently I'm falling back to other applications to
accomplish this efficiently.

Regards,
Bernt

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[Orgmode] Re: Composing letters using org-mode and scrlttr2

[Srinivas]

>   If there is some general interest, I could work on making a formal
>   patch available.
> 


Jambunathan,

I would be interested in such capabilities. I would like to see a sample PDF 
output so that I can see the desired output.

Also, I think it will be useful to see what documents (PDF versions) others 
have produced using org-mode and HTML or LATeX. Perhaps this can go on the Worg 
site.

- Srinivas


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[Orgmode] Re: Behavior of Gnus when called from an hyperlink

[Tassilo Horn]

David Maus  writes:

Hi David,

>>I'm not sure, but I think the gnus registry caches message-ids and
>>other information.  Maybe, that could speed things up a bit.
>
> After toying arround with Gnus at the weekend: Yes, there is .overview
> in ~/News/agent/nnimap/// that contains UIDs and (among
> others) the message-id header.  However it seems like there is no
> function in gnus-cache.el to query the UID ("message number") for a
> given message-id.

If that is true, I'd go and ask the Gnus devs for the reason.  Maybe in
most cases querying the server is faster than processing the .overview
file...

> A hacky solution could be to do the lookup manually in org-gnus.el: If
> the backend is nnimap and this cache file exists and a customization
> variable `org-gnus-foo' is set, open the file and try to find the UID
> for this message-id.

Well, as a last resort that could be done, but I'm in favor of
delegating the issue to the Gnus devs.  The problem will bite you in
normal Gnus usage, too.  (Ok, at least when searching for/restricting
with a given message id.  Scoring is also a candidate using
message-ids.)

Do you want to raise a question at d...@gnus.org, or should I do this
evening?

Bye,
Tassilo


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[Orgmode] Re: [PATCH] org-export-generic, " text markup" -- and a request

[Robert Goldman]

FWIW, I have a number of substantial modifications to org-export-generic that
fix its original inability to handle typefaces across line boundaries.

However, my understanding is that all patches for org-export-generic wait on Wes
Hardaker to approve them.

If this would be a good time, I can ship the patches again.

Best,
r



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[Orgmode] Re: [BABEL] Output with octave

[d . tchin]

Eric S Fraga  ucl.ac.uk> writes:

> 
> I don't think you are missing anything obvious as for the ":results
> value" case, I get the same thing.  In fact, for ":results output", I
> don't actually get any output!  I'm not sure why.  I wonder if there
> is a dependence on the version of Octave?  I'm using a fairly old
> version (3.0.x instead of 3.2.x).
> 

I use following version of Octave : 

GNU Octave, version 3.2.0
Copyright (C) 2009 John W. Eaton and others.
This is free software; see the source code for copying conditions.
There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.  For details, type `warranty'.

Octave was configured for "i686-pc-mingw32".



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[Orgmode] org-mobile-create-sumo-agenda might be the culprit?

[Michael Gilbert]

Hi —

I wrote a message to the list recently about mobileorg failing to generate 
files to sync. I have a little more detail. A hunch really, since I am not 
savvy in Lisp at all. But it looks to me like org-mobile.el is getting to 
org-mobile-create-sumo-agenda and then stopping. There is no error message, but 
I think somehow that's where it stops.

I have one custom agenda of any important (I believe Carsten in fact wrote it 
for an earlier request I have):

(setq org-agenda-custom-commands
 '(("d" "Due today" agenda ""
((org-deadline-warning-days 0)
 (org-agenda-skip-scheduled-if-deadline-is-shown t)
 (org-agenda-skip-function
  (lambda ()
(let* ((dl (org-entry-get nil "DEADLINE")))
  (if (or (not dl)
  (equal dl "")
  (org-time> dl (org-time-today)))
  (progn (outline-next-heading) (point
  ("I" "Import diary from iCal" agenda ""
 ((org-agenda-mode-hook
   (lambda ()
 (org-mac-iCal)
)
  ;; ...other commands here
   )



Am I on the right track? Any advice?

— Michael







My earlier message:

My goal was to make the initial connection with the App on my phone. I'm using 
Dropbox and my startup file includes:

(setq org-mobile-inbox-for-pull "~/OrgMode/Flagged.org")
(setq org-mobile-directory "~/Documents/Dropbox/MobileOrg")

I run M-x org-mobile-push  and it seems to do something. But no files are 
pushed to the MobileOrg folder. I set debug-on-error and I get no error. I've 
reloaded .el files.

Any advice? Next steps?  

TIA.



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Re: [Orgmode] Re: Behavior of Gnus when called from an hyperlink

[David Maus]

Tassilo Horn wrote:
>Sébastien Vauban 
>writes:

>>> This is the point where I conclude that there can't be done anything
>>> about it except modifying Gnus' cache mechanism.[2]
>>
>> Do you think that would happen?  Are there people aware of this, and
>> willing to do such a change?

>I'm not sure, but I think the gnus registry caches message-ids and other
>information.  Maybe, that could speed things up a bit.

After toying arround with Gnus at the weekend: Yes, there is .overview
in ~/News/agent/nnimap/// that contains UIDs and (among
others) the message-id header.  However it seems like there is no
function in gnus-cache.el to query the UID ("message number") for a
given message-id.

A hacky solution could be to do the lookup manually in org-gnus.el: If
the backend is nnimap and this cache file exists and a customization
variable `org-gnus-foo' is set, open the file and try to find the UID
for this message-id.

Best,
  -- David
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[Orgmode] Footnotes: paragraph definition, section name

[Stefan Vollmar]

Hi,

I am using org-mode version 7.01g and I have just come across some problems 
with footnotes.

(1) I have a paragraph that after applying fill-paragraph (M-Q) contains these 
lines:

...
automated tests that work across a range of very different operating
systems and hardware acquire a different level of quality
[fn:Turku2008Vinci]. This approach also reflects the current IT
infrastructure at our institute [...]

The problem here is that [fn:Turku2008Vinci] is supposed to be a named footnote 
reference, however, Org-mode interprets it as a footnote definition (it starts 
in column 0 after a newline). The current documentation says:

"[...] footnote is defined in a paragraph that is started by a footnote marker 
in square brackets in column 0, no indentation allowed."

So it depends on the definition of "paragraph" - this might be different for 
different approaches of "Line Wrapping" - whether line breaks use newline 
characters or "soft" returns. This problem might be solved if a footnote 
defintion would require one empty line before the definition?

(2) If I set org-footnote-section to "References" and have a "References" 
heading, in HTML export that heading vanishes and I get a "Footnotes:" section 
instead. How can I have "References" instead of "Footnotes:"?

Many thanks in advance.
Warm regards,
 Stefan
-- 
Dr. Stefan Vollmar, Dipl.-Phys.
Head of IT group
Max-Planck-Institut für neurologische Forschung
Gleuelerstr. 50, 50931 Köln, Germany
Tel.: +49-221-4726-213  FAX +49-221-4726-298
Tel.: +49-221-478-5713  Mobile: 0160-93874279
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[Orgmode] row and col spaning in table?

[David Hajage]

Hello,

I think org-mode is a very great tool. I use a lot of tables in my documents
produced with org, and I was wondering if row and col spaning was possible?
If not, is there any plan to add this feature in a future release? So that
this kind of tables work:

|---+---+-+---+---+---+---+---+--|
| | agegp|
| +---+---+---+---+---+--|
| | 25-34 | 35-44 | 45-54 | 55-64 | 65-74 | 75+  |
|===+===+=+===+===+===+===+===+==|
| alcgp | 0-39g/day | n   | 4 | 4 | 4 | 4 | 4 | 3|
|   +   +-+---+---+---+---+---+--|
|   |   | col | 0.27  | 0.27  | 0.25  | 0.25  | 0.27  | 0.27 |
|   +---+-+---+---+---+---+---+--|
|   | 40-79 | n   | 4 | 4 | 4 | 4 | 3 | 4|
|   +   +-+---+---+---+---+---+--|
|   |   | col | 0.27  | 0.27  | 0.25  | 0.25  | 0.20  | 0.36 |
|   +---+-+---+---+---+---+---+--|
|   | 80-119| n   | 3 | 4 | 4 | 4 | 4 | 2|
|   +   +-+---+---+---+---+---+--|
|   |   | col | 0.20  | 0.27  | 0.25  | 0.25  | 0.27  | 0.18 |
|   +---+-+---+---+---+---+---+--|
|   | 120+  | n   | 4 | 3 | 4 | 4 | 4 | 2|
|   +   +-+---+---+---+---+---+--|
|   |   | col | 0.27  | 0.20  | 0.25  | 0.25  | 0.27  | 0.18 |
|---+---+-+---+---+---+---+---+--|

I know this is not a small request, and I don't know how to adapt
spreadsheet capabilities to that kind of table, but...

Thank you very much.
David
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[Orgmode] Re: Finding old appointments

[Tassilo Horn]

David Maus  writes:

Hi David,

>>  - headlines that contain only past timestamps and are closed TODOs (if
>>they are TODOs), that is, any TODO state after the | in
>>`org-todo-keywords'
>
>>  - the same applies to all children of that entry, recursively
>
> This is quite simple: The function returns non-nil if an entry is
> active (recursion \o/):
>
> (defun dmj/org-entry-is-active-p ()
>   "Return non-nil if entry is active.
> An entry is considered to be active if it has an active timestamp
> in the future or an open TODO keyword or at least one active child."
>   (save-excursion
> (beginning-of-line)
> (let ((children (delq nil (org-map-entries
>  'dmj/org-entry-is-active-p
>  (format "LEVEL>%d" (org-outline-level))
>  'tree)))
> (timestamp (org-entry-get nil "TIMESTAMP")))
>   (or (org-entry-is-todo-p)
>   children
>   (and timestamp (time-less-p (current-time) (org-time-string-to-time 
> timestamp)))

Looks good. :-)

>>  - the agenda should only list the top-most entries for which these
>>properties hold
>
> This is the tougher part: Because the state of an entry
> (active/inactive) depends on its children the function that finally
> displays the entries must first obtain the state of the entries and
> their relationships and then remove all inactive entries whose
> (grand,grand...)parents are inactive.
>
> Sounds like you would require a a user-defined agenda function in
> `org-agenda-custom-commands'.

Yes, that's most likely.  I'll dig into that further when I find some
spare time.  Thanks a lot for providing this starting point for me.

Bye,
Tassilo


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Re: [Orgmode] Re: Finding old appointments

[David Maus]

Tassilo Horn wrote:
>Matt Lundin  writes:

>>> Well, basically I'm just looking for a search facility that shows me
>>> an agenda view with all entries that contain only timestamps before
>>> today and no pending todos, so that I can use the agenda commands to
>>> act on them.  Some will be deleted, others archived.
>>
>> Here's an example of an agenda view that would bring up all old,
>> active timestamps marked DONE:
>>
>> C-c a m [RET] TIMESTAMP<""+TODO="DONE"

>Oh, nice.  I've never use this search, but it is very useful.  Simply by
>searching for a timestamp before today does already help me.

>Additionally, playing around with it helped me being even more
>specific.  So what I want to get is an agenda with

>  - headlines that contain only past timestamps and are closed TODOs (if
>they are TODOs), that is, any TODO state after the | in
>`org-todo-keywords'

>  - the same applies to all children of that entry, recursively

This is quite simple: The function returns non-nil if an entry is
active (recursion \o/):

(defun dmj/org-entry-is-active-p ()
  "Return non-nil if entry is active.
An entry is considered to be active if it has an active timestamp
in the future or an open TODO keyword or at least one active child."
  (save-excursion
(beginning-of-line)
(let ((children (delq nil (org-map-entries
   'dmj/org-entry-is-active-p
   (format "LEVEL>%d" (org-outline-level))
   'tree)))
  (timestamp (org-entry-get nil "TIMESTAMP")))
  (or (org-entry-is-todo-p)
children
(and timestamp (time-less-p (current-time) (org-time-string-to-time 
timestamp)))

>  - the agenda should only list the top-most entries for which these
>properties hold

This is the tougher part: Because the state of an entry
(active/inactive) depends on its children the function that finally
displays the entries must first obtain the state of the entries and
their relationships and then remove all inactive entries whose
(grand,grand...)parents are inactive.

Sounds like you would require a a user-defined agenda function in
`org-agenda-custom-commands'.


HTH,
  -- David

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Re: [Orgmode] Bug: possible bug in latex export [7.01trans (release_6.36.735.g15ca.dirty)]

[Stephen Eglen]

Thanks David, and apologies for not checking the archives.  I'll put
bugfixing it my todo list!

Stephen

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[Orgmode] Re: [BABEL] evaluation of R code in export

[Rainer M Krug]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Hi Eric,

On 23/07/2010 19:45, Eric Schulte wrote:
> Hi Rainer,
> 
> I general it is useful to have the results of Babel-evaluated code
> appear in the session history as it can help for debugging.

Ok - agreed. The results are quite useful - but I would prefer the
history of the commands in the R session which is accessible by C-up to
not include the commands issued - but I can live with it as it is now.

> 
> Maybe (if you are specifying the session on a subtree or file wide
> bases) it would be possible to change the session name to a different
> name so that your normal working session won't be polluted.

Wouldn't work, as I am creating a report of an object created in the
other R session - unless I save it and load it, which would be an
option. I'll think about it.

> 
> This is butting up against a more general feature which has been dancing
> in the twilight of Babel's glow for some time now.  Namely the ability
> to specify header arguments which are conditional on the export state,
> where export state can be something like
> - nil :: not currently export, this is the default
> - t :: an export is taking place
> - html :: exporting to html
> - latex :: exporting to latex
> - ascii :: exporting to ascii
> etc...

I think that would be really useful - in addition, when I want to
include a graph in the export, I would prefer to be able to specify one
format for html (png) and pdf for latex / pdf export.

> 
> How exactly this should best be folded into the existing header argument
> resolution schema is not immediately clear, so this development may take
> some time.
> 
> If anyone has suggestions on syntax or behavior for this functionality
> please do share.

Unfortunately not,

Cheers and thanks,

Rainer

> 
> Thanks -- Eric
> 
> Rainer M Krug  writes:
> 
>> Hi
>>
>> assuming I have the following in an org buffer (and enabled evaluation
>> of R code), and export it to html.
>>
>> The exported html looks perfect, but when I go into the *R_test* buffer,
>> I see all the commands evaluated in the export (which is not such a
>> problem), but they are also inserted in the history.
>>
>> When evaluating a line of code in ESS, this line is evaluated, but NOT
>> added to the history. Would that be possible for evaluation of R code
>> during export as well?
>>
>> My reasoning is, that I have a report in an .org file, which is using an
>> existing R session in which I conduct simulations. When creating the
>> report from a finished simulation, my command history in the *R* buffer
>> contains all the commands evaluated for the export, and if I want to
>> change one parameter for the simulation, I either have to go back
>> several commands to find it, or type it in again. If the evaluated
>> commands would not appear in the history, I could simply go one command
>> back.
>>
>> If it is not to much work, it would be great if this could be changed.
>>
>> Cheers and thanks for an excellent tool,
>>
>> Rainer
>>
>> 
>>
>> #+BABEL: session *R_test*
>> ** test
>> #+begin_src R :exports both
>>   x <- 5
>>   x
>> #+end_src
>>
>> 


- -- 
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Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
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[Orgmode] Re: Finding old appointments

[Tassilo Horn]

Matt Lundin  writes:

>> Well, basically I'm just looking for a search facility that shows me
>> an agenda view with all entries that contain only timestamps before
>> today and no pending todos, so that I can use the agenda commands to
>> act on them.  Some will be deleted, others archived.
>
> Here's an example of an agenda view that would bring up all old,
> active timestamps marked DONE:
>
> C-c a m [RET] TIMESTAMP<""+TODO="DONE"

Oh, nice.  I've never use this search, but it is very useful.  Simply by
searching for a timestamp before today does already help me.

Additionally, playing around with it helped me being even more
specific.  So what I want to get is an agenda with

  - headlines that contain only past timestamps and are closed TODOs (if
they are TODOs), that is, any TODO state after the | in
`org-todo-keywords'

  - the same applies to all children of that entry, recursively

  - the agenda should only list the top-most entries for which these
properties hold

Example:

* Project X
** TODO foo
   SCHEDULED: <2010-06-22 Tue>
** Bla bla bla
*** DONE baz
DEADLINE: <2010-06-01 Tue>
*** Meeting with Hugo
<2010-06-04 Fri>

So in that case, the search should list only the "Bla bla bla" entry,
because it's the top-most entry where all children are past and done.
The "TODO foo" is not recognized, because although its timestamp is in
the past, it has an open TODO state.  (And because of that, the parent
of both entries "Project X" doesn't match the search criteria.)

> (If I understand the question correctly...) The variable
> org-stuck-projects (see the docstring) can be tweaked to identify
> subtrees that match your criteria.

Although I don't use the stuck projects functionality right now, I don't
want to abuse it for something different.

> A custom skip function might also be useful here. 
>
> (info "(org) Special agenda views")

Thanks, I'll read that up.

Bye,
Tassilo


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[Orgmode] Re: org-protocol

[Thierry Volpiatto]

Richard Riley  writes:

> Richard Riley  writes:
>
>> I'm trying to get FF working with org again -
>>
>> http://orgmode.org/worg/org-contrib/org-protocol.php
>>
>> It says 
>>
>> ,
>> |1. Type "about:config" into the location bar and press enter.
>> |2. Click "I'll be careful, I promise!" to continue.
>> |3. Right-click on the grid
>> |4. Choose "New" -> "String" from the context menu.
>> |5. Enter "network.protocol-handler.app.org-protocol" as the properties 
>> name.
>> |6. Click "OK".
>> |7. Leave the value blank.
>> |8. Next time you try to open a location "org-protocol://..." FF will 
>> ask you for the program to use. Enter the path to emacsclient.
>> `
>>
>> It doesnt prompt me for a program. Is this uptodate or is there a better
>> step by step guide? 
>>
>
> Despite having 3.5, the instructions for getting the app registered
> didnt work for some reason (iceweasel?). Anyway, the gconftool method
> worked.
You can use firefox-protocol.el from
http://mercurial.intuxication.org/hg/emacs-bookmark-extension/

M-x firefox-protocol-installer-install

Don't know if it work with iceweasel, but i have set many protocols here
in firefox without any failures.

You will find a documentation file bookmark-extensions-documentation.rst.
 
-- 
Thierry Volpiatto
Get my Gnupg key:
gpg --keyserver pgp.mit.edu --recv-keys 59F29997 


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