Re: [BUG] unregistered buffer warning when saving buffer in org src block [9.6 (9.6-??-dbd192bbc @ /Users/sfq/.my.emacs.d/doom-emacs/.emacs.d/.local/straight/build-27.2/org/)]
时芳泉 writes: > This warning appears when saving a org mode buffer if the poly-org mode is > enabled and the cursor is in a source block. I have an idea what may be happening. Can you check the value of after-change-functions variable when cursor is inside and outside a source block? Best, Ihor
[BUG] unregistered buffer warning when saving buffer in org src block [9.6 (9.6-??-dbd192bbc @ /Users/sfq/.my.emacs.d/doom-emacs/.emacs.d/.local/straight/build-27.2/org/)]
This warning appears when saving a org mode buffer if the poly-org mode is enabled and the cursor is in a source block. Warning (emacs): org-element--cache: Unregistered buffer modifications detected. Resetting. If this warning appears regularly, please report it to Org mode mailing list (M-x org-submit-bug-report). The buffer is: Building Abstractions with Data.org Current command: save-buffer Backtrace: " backtrace-to-string(nil) org-element--cache-sync(# 1220) org-element-at-point() org-src-coderef-format((src-block (:language \"racket\" :switches nil :parameters nil :begin 4 :end 43 :number-lines nil :preserve-indent nil :retain-labels t :use-labels t :label-fmt nil :value \"(version) \\n\" :post-blank 0 :post-affiliated 4 :mode planning :granularity element :parent (section (:begin 4 :end 43 :contents-begin 4 :contents-end 43 :robust-begin 4 :robust-end 41 :post-blank 0 :post-affiliated 4 :mode section :granularity element :parent (headline (:raw-value \"\" :begin 1 :end 43 :pre-blank 0 :contents-begin 4 :contents-end 43 :robust-begin 6 :robust-end 41 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1 :title \"\"))) org-babel-get-src-block-info(light (src-block (:language \"racket\" :switches nil :parameters nil :begin 4 :end 43 :number-lines nil :preserve-indent nil :retain-labels t :use-labels t :label-fmt nil :value \"(version) \\n\" :post-blank 0 :post-affiliated 4 :mode planning :granularity element :parent (section (:begin 4 :end 43 :contents-begin 4 :contents-end 43 :robust-begin 4 :robust-end 41 :post-blank 0 :post-affiliated 4 :mode section :granularity element :parent (headline (:raw-value \"\" :begin 1 :end 43 :pre-blank 0 :contents-begin 4 :contents-end 43 :robust-begin 6 :robust-end 41 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1 :title \"\"))) xenops-src-parse-at-point() funcall(xenops-src-parse-at-point) xenops-util-first-result(funcall (xenops-math-parse-block-element-at-point xenops-math-parse-inline-element-at-point xenops-math-parse-table-at-point xenops-image-parse-at-point xenops-footnote-parse-at-point xenops-minted-parse-at-point xenops-src-parse-at-point)) xenops-parse-any-element-at-point() xenops-apply-handlers-at-point((xenops-math-render xenops-image-render xenops-footnote-render) nil) xenops-apply-operations-at-point((render)) xenops-render-at-point() funcall(xenops-render-at-point) (condition-case e (funcall hook) ((debug error) (signal 'doom-hook-error (list hook e doom-run-hook(xenops-render-at-point) run-hook-wrapped(doom-run-hook xenops-render-at-point) (condition-case e (run-hook-wrapped hook #'doom-run-hook) ((debug doom-hook-error) (if debug-on-error nil (lwarn hook :error \"Error running hook %S because: %s\" (if (symbolp (car (cdr e))) (symbol-name (car (cdr e))) (car (cdr e))) (car (cdr (cdr e) (signal 'doom-hook-error (cons hook (cdr e) (let ((hook (car --dolist-tail--))) (condition-case e (run-hook-wrapped hook #'doom-run-hook) ((debug doom-hook-error) (if debug-on-error nil (lwarn hook :error \"Error running hook %S because: %s\" (if (symbolp (car ...)) (symbol-name (car ...)) (car (cdr e))) (car (cdr (cdr e) (signal 'doom-hook-error (cons hook (cdr e) (setq --dolist-tail-- (cdr --dolist-tail--))) (while --dolist-tail-- (let ((hook (car --dolist-tail--))) (condition-case e (run-hook-wrapped hook #'doom-run-hook) ((debug doom-hook-error) (if debug-on-error nil (lwarn hook :error \"Error running hook %S because: %s\" (if (symbolp ...) (symbol-name ...) (car ...)) (car (cdr ... (signal 'doom-hook-error (cons hook (cdr e) (setq --dolist-tail-- (cdr --dolist-tail-- (let ((--dolist-tail-- hooks)) (while --dolist-tail-- (let ((hook (car --dolist-tail--))) (condition-case e (run-hook-wrapped hook #'doom-run-hook) ((debug doom-hook-error) (if debug-on-error nil (lwarn hook :error \"Error running hook %S because: %s\" (if ... ... ...) (car ...))) (signal 'doom-hook-error (cons hook (cdr e) (setq --dolist-tail-- (cdr --dolist-tail--) doom-run-hooks(before-save-hook) apply(doom-run-hooks before-save-hook) run-hooks(before-save-hook) #f(compiled-function (&optional called-interactively) \"Save the current buffer in its visited file, if it has been modified.\\n\\nThe hooks `write-contents-functions', `local-write-file-hooks'\\nand `write-file-functions' get a chance to do the job of saving;\\nif they do not, then the buffer is saved in the visited file in\\nthe usual way.\\n\\nBefore and after saving the buffer, this function runs\\n`before-save-hook' and `after-save-hook', respectively.\" (interactive '(called-interactively)) #)(t) apply(#f(compiled-function (&optional called-interactively) \"Save the curren
Custom TODO keywords and org-enforce-todo-dependencies
Dear all, I have read the manual and searched the list archives but not found an answer to this - so apologies if it was in fact covered somewhere. I make use of the variable org-enforce-todo-dependencies along with the :ORDERED: property to have sequentially limited TODO lists. However I found when experimenting with custom TODO keywords that once they were enabled, the blocking functionality did not work. I was able to change any of my TODO headers to "DONE", regardless of the state of the TODO item immediately preceding them. Is there a way these two functions can work together? I would appreciate any guidance. Thanks and regards, Edmund Potts
Re: Emacs-26.3: No such file or directory backtrace
Max Nikulin writes: > With last commit to main d3836c1a13 Emacs-26.3 from Ubuntu-20.04 LTS > focal becomes too old for Org: > > File mode specification error: (file-missing Cannot open load file No > such file or directory backtrace) Thanks for reporting! Fixed. Best, Ihor
Re: upgrade to 9.5 failed:
Pete Siemsen writes: > I'm running Aquamacs 3.6 on a Mac running macOS 11.6. I've been happily > running org-mode 9.1.14 for years. Today, for no particular reason, I tried > to upgrade to org-mode 9.5. I was able to upgrade, and org-version changed > to "9.5", but when I tried some simple commands in an org file, like "TAB" > to do an "org-cycle", I got > > cannot open load file, no such file or directory, backtrace Fixed now. Bes, Ihor
upgrade to 9.5 failed:
I'm running Aquamacs 3.6 on a Mac running macOS 11.6. I've been happily running org-mode 9.1.14 for years. Today, for no particular reason, I tried to upgrade to org-mode 9.5. I was able to upgrade, and org-version changed to "9.5", but when I tried some simple commands in an org file, like "TAB" to do an "org-cycle", I got cannot open load file, no such file or directory, backtrace When I looked in the *Messages" buffer, I saw Error during redisplay: (jit-lock-function 1001) signaled (void-variable org-element-citation-prefix-re) Error during redisplay: (jit-lock-function 1501) signaled (void-variable org-element-citation-prefix-re) eval-buffer: Cannot open load file: No such file or directory, backtrace Warning: Bug in org-mode: it forgets to call `run-mode-hooks' Cannot open load file: No such file or directory, backtrace Mark set For now, I've gone back to version 9.1.14, which still works. What might be wrong? -- Pete
Re: Problems with bibliography while exporting org files
Hello,
Andrea Lazzarini writes:
> I’m a Spacemacs user, and I’ve just upgraded to org mode 9.5.
> Coming from 9.4.6, I’m currently trying to figure out how to adapt to the
> changes in the export mechanism.
>
> When I then try to export an org file via org-export and pandoc, I get the
> following message:
>
> Wrong type argument: stringp,
> ("~/Dropbox/Standard/Bibliografia/bibliografia_generale.bib")
>
> I am setting my bibliography thus:
>
> (setq org-cite-global-bibliography
> '("~/Dropbox/Standard/Bibliografia/bibliografia_generale.bib"))
Could you send the backtrace? I cannot reproduce your issue.
Regards,
--
Nicolas Goaziou
Incorrect link is stored (org-elements?)
`org-store-link' under some conditions may pick a link to wrong heading. Emacs-26.3, Org main~1. --- >8 --- * Right Save this file, kill the buffer, open it again. Put cursor to the empty line below this paragraph, type something, e.g. =a=, undo =C-/=, =M-x org-store-link=. "#its_wrong" is stored instead of "*Right". ** Wrong :PROPERTIES: :CUSTOM_ID: its_wrong :END: --- 8< ---
Emacs-26.3: No such file or directory backtrace
With last commit to main d3836c1a13 Emacs-26.3 from Ubuntu-20.04 LTS focal becomes too old for Org: File mode specification error: (file-missing Cannot open load file No such file or directory backtrace) and other errors
Re: org-goto shows full-size help window
Max Nikulin writes: > Ihor, a kind of fix (dropping of `org-no-popus' just for `org-goto') is > committed to the main branch only. Neither of discussed approaches has > landed to bugfix so far. I genuinely thought that the fix was on the same branch with the original commit. Let me cherry-pick Marco's commit and back-port it to bugfix. Best, Ihor
Re: Tables and org babel
Den mån 8 nov. 2021 kl 12:54 skrev Greg Minshall : > sorry, in fact, =-Q= doesn't matter: > > failing: > - Org mode version 9.5 (9.5-g531577 @ > /home/minshall/.emacs.d/straight/build/org/) > > succeeding: > - Org mode version 9.5 (9.5-gced2b3 @ > /home/minshall/.emacs.d/straight/build/org/) > > cheers, Greg > Thanks Greg, I updated to latest org and it worked again. God, this was driving me crazy last night! Problem solved with Org mode version 9.5 (release_9.5-220-g343e22) /Henrik
Re: org-goto shows full-size help window
On 08/11/2021 21:25, Ihor Radchenko wrote: Carlos Pita writes: when calling org-goto I get a full-size help window with very little content. I believe this window is supposed to be at the bottom of the indirect search buffer but for some reason it occupies the entire frame. See the attached screenshot. See https://list.orgmode.org/orgmode/87mtnovv7f@alphapapa.net/ It should be already fixed on bugfix branch. Ihor, a kind of fix (dropping of `org-no-popus' just for `org-goto') is committed to the main branch only. Neither of discussed approaches has landed to bugfix so far.
Re: org-goto shows full-size help window
> > .See https://list.orgmode.org/orgmode/87mtnovv7f@alphapapa.net/ > It should be already fixed on bugfix branch. > Thanks for the prompt response! I'm going to install it from gnu elpa then. What is the exact relationship between bugfix and the version of org shipped with emacs? When emacs is released does it always include the latest org bugfix release available at the time? I'm not asking about my particular situation, after all I'm running an emacs prerelease, but in general. Best regards, Carlos >
Re: Introducing Org-transclusion
Noboru Ota writes: > Source: > https://github.com/nobiot/org-transclusion/issues/42#issuecomment-739570395 > > I personally have never come across such performance issue. Are you > aware of some good test file or something to let other people reproduce > it? I tried to create an example file, but I start seeing issues far before the file size becomes large enough for overlays becoming a problem. Try to open the attached file and run M-x org-transclusion-add-all Best, Ihor huge.org Description: Lotus Organizer
Re: org-goto shows full-size help window
Carlos Pita writes: > Hi all, > > when calling org-goto I get a full-size help window with very little > content. I believe this window is supposed to be at the bottom of the > indirect search buffer but for some reason it occupies the entire > frame. See the attached screenshot. See https://list.orgmode.org/orgmode/87mtnovv7f@alphapapa.net/ It should be already fixed on bugfix branch. Best, Ihor
Re: Tables and org babel
sorry, in fact, =-Q= doesn't matter: failing: - Org mode version 9.5 (9.5-g531577 @ /home/minshall/.emacs.d/straight/build/org/) succeeding: - Org mode version 9.5 (9.5-gced2b3 @ /home/minshall/.emacs.d/straight/build/org/) cheers, Greg
Re: Tables and org babel
my data point:
- emacs -Q: works as (i assume) expected
- emacs: i get an error, with this backtrace
Debugger entered--Lisp error: (wrong-type-argument markerp nil)
#f(compiled-function () #)()
org-babel-insert-result((1 2 3 4) ("replace") ("emacs-lisp" "data" ((:var
data 1 2 3 4) (:colname-names) (:rowname-names) (:result-params "replace")
(:result-type . value) (:results . "replace") (:exports . "code") (:session .
"none") (:cache . "no") (:noweb . "no") (:hlines . "no") (:tangle . "no")
(:lexical . "no")) "" nil 16920 "(ref:%s)") nil "emacs-lisp")
org-babel-execute-src-block(nil ("emacs-lisp" "data" ((:var data 1 2 3 4)
(:colname-names) (:rowname-names) (:result-params "replace") (:result-type .
value) (:results . "replace") (:exports . "code") (:lexical . "no") (:tangle .
"no") (:hlines . "no") (:noweb . "no") (:cache . "no") (:session . "none")) ""
nil 16920 "(ref:%s)"))
org-ctrl-c-ctrl-c(nil)
funcall-interactively(org-ctrl-c-ctrl-c nil)
call-interactively(org-ctrl-c-ctrl-c nil nil)
command-execute(org-ctrl-c-ctrl-c)
i haven't noticed anything weird recently, but this may well be
something in my setup that's odder than "normal org mode" stuff. so, a
grain of salt is warranted.
cheers, Greg
Problems with bibliography while exporting org files
Hi,
I’m a Spacemacs user, and I’ve just upgraded to org mode 9.5.
Coming from 9.4.6, I’m currently trying to figure out how to adapt to the
changes in the export mechanism.
When I then try to export an org file via org-export and pandoc, I get the
following message:
Wrong type argument: stringp,
("~/Dropbox/Standard/Bibliografia/bibliografia_generale.bib")
I am setting my bibliography thus:
(setq org-cite-global-bibliography
'("~/Dropbox/Standard/Bibliografia/bibliografia_generale.bib"))
If I specify a "#+bibliography:” locally in the org file, the same problem
reoccurs, now stating:
Wrong type argument: stringp, ("local.bib"
"~/Dropbox/Standard/Bibliografia/bibliografia_generale.bib")
Is there something I must do to be able to export correctly?
Thanks,
Andrea
Emacs : GNU Emacs 28.0.60 (build 1, x86_64-apple-darwin20.6.0, NS
appkit-2022.60 Version 11.6 (Build 20G165))
of 2021-11-02
Package: Org mode version 9.5 (release_9.5-59-g52e6f1 @
/usr/local/Cellar/emacs-plus@28/28.0.50/share/emacs/28.0.60/lisp/org/)
current state:
==
(setq
org-noter--doc-goto-location-hook '(org-noter-pdftools--doc-goto-location)
org-noter--check-location-property-hook '(org-noter-pdftools--check-link)
org-link-elisp-confirm-function 'yes-or-no-p
org-roam-db-gc-threshold 402653184
org-ref-cite-onclick-function #[257 "\300 \207" [org-ref-citation-hydra/body]
2 "\n\n(fn _)"]
org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 "\n\n(fn
ENTRY)"]
org-pdftools-get-desc-function 'org-pdftools-get-desc-default
org-ref-insert-cite-function 'org-ref-insert-cite-link
org-download-file-format-function 'org-download-file-format-default
org-log-done 'time
org-fontify-done-headline nil
org-roam-dailies-capture-templates '(("d" "default" plain "%?" :target
(file+head "%<%Y-%m-%d>.org" "#+title: %<%Y-%m-%d>\n#+startup: content")))
org-log-into-drawer t
org-babel-after-execute-hook '(spacemacs/ob-fix-inline-images)
org-agenda-files '("~/Dropbox/Agenda/todo.org"
"~/Dropbox/Agenda/todo.org_archive" "~/Dropbox/Corsi/corsi_conclusi.org"
"/Users/test/Dropbox/org-roam/20210709174709-erc.org"
"/Users/test/Dropbox/org-roam/20211018120015-disfor.org"
"/Users/test/Dropbox/org-roam/20211104164945-esami.org"
"/Users/test/Dropbox/org-roam/20211009124857-racconti_de_roberto.org"
"/Users/test/Dropbox/org-roam/20211006180957-curiosity_driven.org"
"/Users/test/Dropbox/org-roam/20211029144338-de_roberto.org")
org-capture-templates '(("d" "Deadline" entry (file+headline
"~/Dropbox/Agenda/todo.org" "Tasks") "* TODO %?\n DEADLINE: %T\n\n")
("t" "Task" entry (file+headline
"~/Dropbox/Agenda/todo.org" "Tasks") "* TODO %?\n SCHEDULED: %T\n\n")
("i" "Idea" entry (file+headline
"~/Dropbox/Agenda/inbox.org" "Idee") "* %?"))
org-export-before-parsing-hook '(org-attach-expand-links org-reledmac-export)
org-default-notes-file "~/Dropbox/Agenda/todo.org"
org-export-async-init-file
"/Users/test/.emacs.d/layers/+emacs/org/local/org-async-init.el"
org-roam-find-file-hook '(org-roam-buffer--setup-redisplay-h
org-roam--register-completion-functions-h org-roam--replace-roam-links-on-save-h
org-roam-open-id-with-org-roam-db-h
org-roam-db-autosync--setup-update-on-save-h)
org-ref-bibtex-assoc-pdf-with-entry-move-function 'rename-file
org-publish-timestamp-directory "~/.emacs.d/.cache/.org-timestamps/"
org-archive-hook '(org-attach-archive-delete-maybe)
org-file-apps '(("\\.docx\\'" . default) (auto-mode . emacs))
org-noter-pdftools-markup-pointer-function
'pdf-annot-add-highlight-markup-annotation
org-odt-format-inlinetask-function 'org-odt-format-inlinetask-default-function
org-ascii-format-drawer-function #[771 "\207" [] 4 "\n\n(fn NAME CONTENTS
WIDTH)"]
org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
org-cycle-show-empty-lines org-optimize-window-after-visibility-change)
org-noter--note-after-tipping-point-hook
'(org-noter-pdftools--note-after-tipping-point)
org-modules '(org-habit ol-doi ol-w3m ol-bbdb ol-bibtex ol-docview ol-gnus
ol-info ol-irc ol-mhe ol-rmail ol-eww)
org-ref-notes-function 'orb-org-ref-edit-note
org-image-actual-width nil
org-mode-hook '(er/add-org-mode-expansions org-ref-org-menu #[0
"\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-show-all
append local] 5]
#[0 "\300\301\302\303\304$\207" [add-hook
change-major-mode-hook org-babel-show-result-all append local] 5]
org-babel-result-hide-spec
org-babel-hide-all-hashes #[0 "\301\211\207"
[imenu-create-index-function org-imenu-get-tree] 2] flyspell-mode
spacemacs/org-setup-evil-surround
spacemacs/load-yasnippet toc-org-enable org-superstar-mode
(lambda nil (require 'org-ref)) org-download-enable
dotspacemacs//prettify-spacemacs-docs
spacemacs//org-babel-do
Re: Tables and org babel
On Monday, 8 Nov 2021 at 08:45, Henrik Frisk wrote: > I'm having troubles getting more than one cell from an org table as a > variable in org-babel. Trying this example from the orgmode manual > (https://orgmode.org/manual/Environment-of-a-Code-Block.html): Data point: works just fine for me. -- : Eric S Fraga via Emacs 28.0.60, Org release_9.5-192-gd4e192 : Latest paper written in org: https://arxiv.org/abs/2106.05096
