Re: [O] Org-mode reinvented?

might > not) be an interesting thing to implement in Org-mode. > > Best, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] pdflatex not found?

gt;>> that say? > >> Still not found. However, adding it to ~/.tcshrc seems to fix the > >> problem. That makes sense, but leaves two questions: > >> > >> 1) Why am I able to run pdflatex (without specifying the path) just > >> from the shell runnin

Re: [O] Links in comments

ould be in the main text? Even within a COMMENT section say? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

[O] Emacs+org-mode in a Docker?

Has anyone tried setting up a Docker with an Emacs and org-mode setup? I am looking for some kind of solution like this to use with some students. Any thoughts? Thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA

Re: [O] Babel: How to call code in one org file into another org file

> > > file1.org: > ... > #+begin_src lisp > (defun foo () >(...)) > #+end_src > > is then called from. . . > > file2.org: > ... > #+begin_src lisp > (defun baa () > (foo)) > #+end_src > > > LB -- Professor John Kitchin Doherty Hal

Re: [O] Babel: How to call code in one org file into another org file

Odd. I found this I wrote before http://kitchingroup.cheme.cmu.edu/blog/2014/06/24/Using-org-files-like-el-files/ What org version do you have? On October 30, 2015, at 10:15 PM, Lawrence Bottorff wrote: @John Kitchin: I can't seem to find a `org-babel-load-file`.  

Re: [O] How does Library of Babel actually work?

ND_SRC and you will get 8. org-babel-load This isn't possible in other languages. You can of course have an elisp block to tangle f1.org, and then if it was python, for example, you could import the functions in a python block. John --- Professor John Kitchi

Re: [O] Emacs+org-mode in a Docker?

#q=nic%20ferrier%20emacs%20container > http://emacswiki.org/emacs/NicFerrier > https://libraries.io/github/nicferrier/emacs-lxc > http://nic.ferrier.me.uk/blog/2013_08/the-emacs-tapas > https://github.com/nicferrier/docker-shell-deploy/blob/master/README.md > http://www.emacswiki.org/ema

Re: [O] Org and Citations / References / Bibliography

find something from the .bib file. > > Any suggestions what I can do, any simple / minimalistic init.el file > which I can merge into my config? > > Thanks, > > Rainer > > > Footnotes: > [1] > http://kitchingroup.cheme.cmu.edu/blog/2014/05/13/Using-org-ref-

Re: [O] Org and Citations / References / Bibliography

l4_dg][org-ref video]] and > [[https://github.com/jkitchin/jmax/blob/master/org-ref.org][org-rel github > site]] for further details (John Kitchin) > #+begin_src emacs-lisp > (use-package ebib > :ensure t > ) > (use-package dash > :ensure t > ) > (use-package s &g

Re: [O] Conditional link export?

ckages]] > #else > [[https://www.gnu.org/software/emacs/manual/html_node/emacs/Packages.html]] > #endif > > Oleh -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Emacs+org-mode in a Docker?

This sounds a lot like what I have in mind. Have you tried doing this yet? Grant Rettke writes: > On Wed, Nov 4, 2015 at 7:07 PM, John Kitchin wrote: >> Thanks for all the notes! It looks like a not too trivial exercise that >> might have to be a summer project for me. > &

Re: [O] long running processes

gt; long-running functions from within org-mode and see the progress of the > computation as it happens. > > Tom -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] images rendering after execution?

d by source code > blocks inline immediately? None of the options I found in the documentation > seemed to work. > > Thanks, > Tom -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] long running processes

Your suggestions sounds possible to me. If you are up for it, I suggest trying to implement it, and offering it as a patch. Tom writes: > On Wed, Nov 18, 2015 at 2:55 PM, John Kitchin > wrote: > >> I am pretty sure this is not directly possible right now. >> >> Some

[O] asynchronous python code blocks in org-mode

. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

[O] adding attributes to tables in results

uot; echo $data #+end_src #+BEGIN_SRC emacs-lisp :post attr_wrap(*this*) (list (+ 2 4) 4 5) #+END_SRC #+RESULTS: : #+ATTR_LATEX: :environment longtable : 6 4 5 Does anyone know a way to have a code block output a table with attributes (besides printing them as strings with raw output)? -- Profe

Re: [O] adding attributes to tables in results

Thanks. That gets me pretty close to what I want. Charles C. Berry writes: > On Sat, 21 Nov 2015, John Kitchin wrote: > >> Hi everyone, >> >> I am trying to figure out a way to automatically add some attributes to >> tables generated from code blocks. >> >

Re: [O] adding attributes to tables in results

nt unless I run C-c ' on them to get them in org, and I also want them functional in the org-buffer too. Vikas Rawal writes: > John, > > Just curious. What advantage do you see in adding these attributes to the > code block, and not directly to the result? > > Vikas >

Re: [O] How does org mode write to a file?

g-babel-load-file tip from before. However, it seems > to tangle everything in the file, then does load-file. I do want the > finer-grained control of LOB where I can specify which code blocks to make > live. But then maybe I should just roll my own.. . . . > > LB > > > > > O

Re: [O] adding attributes to tables in results

:environment longtable |40|51|32|51|32|51|41| Charles C. Berry writes: > On Sat, 21 Nov 2015, John Kitchin wrote: > >> I am running a search committee of 5 people. As applications come in, an >> org heading is created for each application, and I run a command to send >>

[O] org-preview-latex-fragment for @@latex:stuff@@?

Should the inline latex fragments like @@latex:\ce{H_{2}O}@@ be previewable in org files with org-preview-latex-fragment? They don't seem to be, and just wanted to confirm that is intended behavior. Thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Car

Re: [O] How can I wrap the subscript into a math environment in Org-mode?

ons > 'wrap-subscript-with-math-environment) > However, the results exported are like B\($_{\text{25}}$ \). It seems > like the subscript filter contents only contain _25 part. Does anyone > have some solutions about this? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Conditional link export?

s? > > ":results raw" means results are inserted as raw Org text. This is the > same as writing text in an Org document before exporting it. As > a consequence, these results are escaped during the export process. > > You could wrap the results in an export snippet, e.g., > > (format "@@html:http://some.place/%s\";>%s@@" arg1 arg2) > > > Regards, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] org-preview-latex-fragment for @@latex:stuff@@?

s are good ones though, there could be many things that don't make sense to preview in these. Rasmus writes: > John Kitchin writes: > >> Should the inline latex fragments like @@latex:\ce{H_{2}O}@@ be >> previewable in org files with org-preview-latex-fragment? >>

Re: [O] org-preview-latex-fragment for @@latex:stuff@@?

It can be, but a more typical one I use is \ce{Cu_{1-x}Pd_{x}} and that has to be wrapped in @@latex:...@@. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803

[O] refontifying links

][Some text I want colored]] and have it show in my buffer in Orangered1. Any thoughts? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Scripting with org-mode

to be able to execute the entire file, and produce > one single output. > > Is this possible? > > SK -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Scripting with org-mode

of course there is a simpler way ;) John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Mon, Nov 30, 2015 at 3:22 PM

Re: [O] asynchronous python code blocks in org-mode

Karl Voit writes: > * John Kitchin wrote: >> Hi everyone, > > Hi John! > >> I worked out some ideas on running Python blocks asynchronously in >> org-mode, while seeing the output of the code, /and/ still capturing the >> output in org-mode! > > Foun

Re: [O] inserting a copy of an element at point (timestamps)

t to > replace it with? > (org-timestamp-change 7 'dat) ))) > ) > > What's the real solution? Thank you, > Matt -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Citation processing via Zotero + zotxt

tation processing you are working on? This should be independent of the citation processing, and is only related to the functions available when you click on a citation. Notes can be accessed via helm-bibtex too. > > Best regards, > Martin Yrjölä > > [1] https://github.com/jkitchin

Re: [O] asynchronous python code blocks in org-mode

Tom writes: > On Mon, Nov 30, 2015 at 1:06 PM, John Kitchin > wrote: > >> I have not thought about sessions and asynchronous execution. It would >> mean a queue and a different way to pass code to the process, which I >> have not thought through yet. What to do when

[O] a post-processing export hook?

could have used a filter on a paragraph, which is where most of the things I was modifying were. Is there some other way I could have done this? -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] a post-processing export hook?

Rasmus writes: > John Kitchin writes: > >> Hi all, >> >> I tried using org-export-before-parsing-hook to modify an org-file prior >> to export to replace some regular expressions with html. >> >> I ran into the following issue. For short substitution

Re: [O] LaTeX export with section number, name and page in internal links

--- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Thu, Dec 3, 2015 at 6:08 AM, Ilya wrote: > I export my Org-Mode notes with internal links to LaTeX

Re: [O] Citation processing via Zotero + zotxt

can parse bibtex files directly > and (as a filter within pandoc) can output formatted citations in org > format. > > As a GNU/Linux user, I would find installing zotero and all the add-ons > messier and more cumbersome than installing pandoc and/or node-js (were > we to use citeproc-

Re: [O] refontifying links

b of third-party > dependencies to “work” at all. It’s a delicate balance... Agreed. The documents are still plain text in the end, and readable if you do it right. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Citation processing via Zotero + zotxt

mber"))) (layout (:delimiter "," :vertical-align "sup") (text (:variable "citation-number" It might start making more sense to think of a lisp based citation processor. It might even address some limitations of bib(la)tex. Now,

Re: [O] Citation processing via Zotero + zotxt

> > I am not yet convinced a citation processor will get us where we want > > because of the complexity of the external dependencies, and the > > potential/probable need for us to define new CSL files for different > > backends, or at a minimum for org-formatted citations and > > bibliographies. Ha

Re: [O] elfeed and orgmode integaration?

rate it > into orgmode. > > It would be great if anyone can share code dealing with capturing from > elfeed into org, linking and any other uses people are coming up with > > thx so much > > best > > Z -- Professor John Kitchin Doherty Hall A207F Department of Chemi

Re: [O] Latex export: How to handle multiple authors, emails, institutes

rg file for the publication as follows: > > #+begin_src org > ,#+latex_class: springer > # Article/chapter specific information: title, authors, institution > ,#+title: The full title of the chapter > ,#+author: The authors > ,#+latex_header: \titlerunning{The

[O] something in between @@html:@@ and html blocks

html block it adds line breaks in the html export. Is there a regular way to avoid this, e.g. to insert a large snippet? Thanks, -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin

Re: [O] something in between @@html:@@ and html blocks

it doesn't seem to work. Eric S Fraga writes: > On Friday, 4 Dec 2015 at 10:43, John Kitchin wrote: >> I have an intermediate use case that isn't covered by html snippets or >> blocks, and I wondered if there is a solution to it. >> >> What I want is to

Re: [O] something in between @@html:@@ and html blocks

Rasmus writes: > John Kitchin writes: > >> I have an intermediate use case that isn't covered by html snippets or >> blocks, and I wondered if there is a solution to it. >> >> What I want is to put a large tooltip on a link in html output. The text >> f

Re: [O] org latex/beamer math escape in a ``surrounding context'': $a$'s

> > but ($a$) and "$a$" do a math-escape. Is there a solution for the above (I > don't want to write $a$ 's)? Or is there a rationale behind that, so I know > when to except an escape and when no? > > Martin -- Professor John Kitchin Doherty Hall A20

Re: [O] something in between @@html:@@ and html blocks

I tried putting an Emacs function docstring as a tooltip and it had a paragraph break in it. On Friday, December 4, 2015, Nicolas Goaziou wrote: > Hello, > > John Kitchin > writes: > > > I have an intermediate use case that isn't covered by html snippets or > >

Re: [O] Citation processing via Zotero + zotxt

g-ref links with pandoc syntax as a pre-filter. Alternatively, when you export markdown documents with org-ref citations, they export as pandoc syntax right now. > > Best, > Matt -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pit

Re: [O] jabref like orgmode based solution to bibliography management (not for latex)

"kloog !unpublished !prep " :candidate-number-limit 500))) John ------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Sat,

Re: [O] jabref like orgmode based solution to bibliography management (not for latex)

othing is selected > No Actions available [8 times] > > thx again > > Z > > On Sat, Dec 5, 2015 at 3:05 PM, John Kitchin > wrote: > >> Try (untested) >> >> >> >> >> >> John >> >> ---

Re: [O] Citation processing via Zotero + zotxt

Matt Lundin writes: > Hi John, > > John Kitchin writes: > >> If a reference type is not listed in the CSL, it also will not be >> supported by CSL I suppose. > > How is this different than biblatex or bibtex? A user could just modify > the style or put in a re

[O] More questions about CSL and org-mode

://github.com/inukshuk/citeproc-ruby The ruby one looks pretty advanced. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Two column layout from org source?

check out http://mirrors.concertpass.com/tex-archive/macros/latex/contrib/paracol/paracol-man.pdf John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http

Re: [O] More questions about CSL and org-mode

ps://groups.google.com/d/msg/zotero-dev/Bz_IenruxX4/24QWuyEIp_IJ > > Best, > Richard > > P.S. John, thanks for your continued research on this. I see that our > procrastination habits are on the same schedule. :) -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] More questions about CSL and org-mode

Richard Lawrence writes: > Hi John, > > John Kitchin writes: > >> Hi all, >> >> This is mostly for the people working on citations in org-mode. >> >> I have been reading about CSL more this weekend. IIRC, one of the >> reasons to develop the new c

Re: [O] problem with org-babel-tangle

or into the code block and execute C-c C-v t > and I obtain > > Tangled 0 code blocks from new.org > C-c C-v f gives the same result. > > What do I miss? > > Thanks > > Uwe Brauer -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegi

Re: [O] Embedding and extracting license/author information in an image file

similar for pdf, but did not find anything but external programs. > > Footnotes: > > [fn:1] https://en.wikipedia.org/wiki/Extensible_Metadata_Platform -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] More questions about CSL and org-mode

> easier way...can anyone else? Like getting an xml citation, and then using xslt to translate it to the format you want? Or something equivalent? Your translation would still have to be clever to avoid nested syntax, which I guess requires some recursive parsing of the output. Modifyi

Re: [O] LaTeX export with section number, name and page in internal links

gt; (lambda (path) >(org-find-headline-by-custom-id "sec" path)) > (lambda (path desc format) >(org-export-dissertation-link "sec" path (or desc "Section") format))) > > ; etc. etc. > #+END_SRC elisp > > Best, > Richard > > OpenPGP Key ID: CF6FA646 > Fingerprint: 9969 43E1 CF6F A646 > > (See http://www.ocf.berkeley.edu/~rwl/encryption.html for more information.) -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

[O] a new csl - citation style lisp ;)

atted citations in an unsorted, numeric superscript style. There is also a working author-year style. It certainly isn't complete, bug-free, or stable yet and might still not solve note-based styles, but it is pretty powerful already. -- Professor John Kitchin Doherty Hall A207F Department o

Re: [O] a new csl - citation style lisp ;)

l don't know how easy it will be to modify backend outputs, e.g. to change how in-text citations are hyperlinked to bibliography entries, or if it would be easy to have a bibitems list prepared for LaTeX, or to export as an org-file with footnotes, or otherwise linked references, etc... We can onl

Re: [O] org-ref is not using default bibliography file

n-browser) > > (add-to-list 'load-path org-ref-path) > > ;; make sure you have dash, helm, helm-bibtex, ebib, s, f, hydra and > key-chord > ;; in your load-path > ;; auto-install dependencies > (require 'org-ref) > > ;; optional but very useful libraries in org-ref > (require 'doi-utils) > (require 'jmax-bibtex) > (require 'pubmed) > (require 'arxiv) > (require 'sci-id) > > #+END_SRC -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] org-ref is not using default bibliography file

;~' while some others are not. > > Cheers, > Kai > > > On Sun, Dec 13, 2015 at 2:15 AM, John Kitchin > wrote: > >> That sounds odd. >> >> What is the output of this src block in your file? >> >> #+BEGIN_SRC emacs-lisp >> (org-ref-find-b

Re: [O] org-ref is not using default bibliography file

will return the absolute path to the .bib file, >> which in my case is >> /home/kai/Dropbox/bibliography/references.bib >> But if I do not have the link, it returns >> ~/Dropbox/bibliography/references.bib >> >> It seems some modules are resolving the '

Re: [O] Wrapping section within LaTeX environment

e. > Actually this is much more a emacs-lisp related question since the > boolean =correction-flag= seems not to work and I don't know why (of > course I have very little knowledge in lisp). Can some emacs-lisp > experts helps me understand why the above code just does not work. >

Re: [O] Wrapping section within LaTeX environment

Cool. You might want to change your string match to :correction: so you don't inadvertently wrap a section with the word correction in the body though. That seems like a possibility here. Xavier Garrido writes: > Le 14/12/2015 02:39, John Kitchin a écrit : >> could you provide a br

Re: [O] Converting paragraph to plain lis

sse viverra > consectetur euismod. Donec non tempor turpis. > > to > > 1. Lorem ipsum dolor sit amet, consectetur adipiscing elit. > 2. Suspendisse viverra consectetur euismod. > 3. Donec non tempor turpis. > > In one key stroke, this would speed up my brain storming proc

[O] org-ref on Melpa finally!

Hi everyone, I finally got org-ref up on melpa. If you have been waiting to try it out for that, now is your chance! Happy Holidays! -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http

Re: [O] org-ref on Melpa finally!

citeproc is so experimental right now I don't think it is ready to be part of org-ref in melpa yet. It is in the git repo. If/when it becomes useful to use, we can figure out how to include it. Martin Yrjölä writes: > Hi! > > John Kitchin writes: >> I finally got org-ref

Re: [O] blog refurbised: how is it in 2015 ?

zvxvDDbkja/L6UU > mZNPnFy+UPcmDneHBdTs3EouNicOuukYgIYhSClhzo8/H5W/MhqdpTAqZM3Rg/en > fqrm+q128F8UQqPKVchOPcURWBCFs0LoxPAH1uJkvE0yOeyFihVZwVpNazz8qJ0= > =setP > -END PGP SIGNATURE- -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

[O] org-ref video

to get a DOI from the PDF or url. 2. Tooltips on cite links The video shows how to use these to make a bibtex file, and then add citations and references in an org-file, followed by export to a pdf. Happy holidays and New Year to everyone! -- Professor John Kitchin Doherty Hall A207F Department

Re: [O] org-ref video

Thanks! B.V. Raghav writes: > Hi, > > I had been following the thread(s) about org-ref by the words, out of > curiosity. However, this video shows how examplary the work is. Awesome > work sir. > > Thanks, > r -- Professor John Kitchin Doherty Hall A207F Department

Re: [O] org-ref video

Thanks! You might add your interpretation of the pronunciation here: http://tex.stackexchange.com/questions/17502/what-is-the-correct-pronunciation-of-tex-and-latex ;) John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie

Re: [O] Base 64 inline images in html export

I can't recall if I pointed to this post before: http://kitchingroup.cheme.cmu.edu/blog/2015/05/09/Another-approach-to-embedding-org-source-in-html/ but it is similar to what you are trying to do. John --- Professor John Kitchin Doherty Hall A207F Departme

Re: [O] blog refurbised: how is it in 2015 ?

> > John Kitchin writes: > >> I integrated org-mode to blogofile here: >> https://github.com/jkitchin/jmax/blob/master/user/blogofile.el > >> This lets me "publish" an org heading to the blog with a single key >> press, and it copies all the files,

Re: [O] Problem with org-ref

depending on the base of the url. I did that on a Mac, and I haven't tested it on a windows or Linux machine. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268

Re: [O] Problem with org-ref

be unescaped on windows because of the : in the path, which is also done now. I pushed these out. hopefully that makes some progress for you! or at least gives some hints on where to look for the problem. Merry Xmas! John ------- Professor John Kitchin Doherty Hall A2

Re: [O] Problem with org-ref

phy-notes variable set to? The default value is nil which would cause that error. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Problem with org-ref

bibnotes.org" > org-ref-default-bibliography '("~/../Dropbox/_biblio/refs.bib")) > > So, non-nil. > > Andreas > > On 25 December 2015 at 00:45, John Kitchin wrote: > >> >> On Thu, Dec 24, 2015 at 1:04 AM, Andreas Kiermeier < >> and

Re: [O] Problem with org-ref

-entry-fr John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Thu, Dec 24, 2015 at 10:16 PM, Andreas Kiermeier

Re: [O] Problem with org-ref

That sounds ok. I pushed a change that sort of does what you ask for. If the "calculated" pdf doesn't exist then you should get prompted for a pdf, and pressing enter for the default (no pdf) should not add a pdf link. John --- Professor John Kitch

Re: [O] Publishing images to various sizes

s? Probably something that > wraps around imagemagick's 'convert' command? > > When I publish images to my website, I want them to be available in > various sizes, so that I can choose the appropriate image for the > context in which it appears, and thus optimize bandwidt

Re: [O] Changing org-block background with org-src-fontify-natively

What do you have org-block-background set to? I use the leuven theme, which gives this a light yellow background for me. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268

Re: [O] How define a hook function for `org-babel-post-tangle-hook' for a single file?

gled > > * Research > > - Emacs 25, Org Git current > - org-babel-post-tangle-hook > - File local variables and eval > > * Question > > What is the best way to do something like this? > > Sincerely, > > Grant Rettke -- Professor John Kitchin Doherty Hall A207F D

Re: [O] [0] Run org-babel src block periodically

ry 1 min > for next 1 hour, I would like to set a property like repeat for times to > repeat and keep the org file auto updated > > #+BEGIN_SRC shell :repeat 60 :repeat-every 60sec > tail -n 10 file > #+END_SRC > > Thank you, > -GP -- Professor John Kitchin Doherty H

Re: [O] importing?

You have some luck with pandoc html to orgmode. Raimund writes: > Good morning, > > I think I caught the exporting issues - but is there a way to, say, > import from html to org-mode? I couldn't find something about this in > the info pages. > > ray -- Professor John

Re: [O] Changing org-block background with org-src-fontify-natively

arl Voit writes: > * John Kitchin wrote: >> What do you have org-block-background set to? > > There is no org-block-background in my setup: C-h v org-block- > only offers org-block-entry-blocking and org-block-regexp. > > Org-mode version 8.3.2 (release_8.3.2-200-gc2eeac) > &

Re: [O] Changing org-block background with org-src-fontify-natively

That is pretty weird. It should be defined in org-faces.el. What org version are you using? John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http

Re: [O] Changing org-block background with org-src-fontify-natively

I guess that gives away I am still using 8.2.10! I have never figured out how to get a higher version of that through elpa/melpa/http://orgmode.org/elpa/. Nick Dokos writes: > John Kitchin writes: > >> That is pretty weird. It should be defined in org-faces.el. What org version

Re: [O] org-ref-clean-bibtex-entry and UTF-8

turn-off" this option in > org-ref-clean-bibtex-entry, so I do not get warnings about non-ascii > characters? > > Many thanks, > > Julian -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Changing org-block background with org-src-fontify-natively

27;s the face-variable that defines the background of > blocks with a specified language? > > Or does it interfere with my "(setq org-src-fontify-natively t)"? > > It would be fine to have both: org-src-fontify-natively *and* a > background colour I can set. -- Profess

[O] org-file using tramp + babel?

there. Some details (not sure they are relevant): I am running Emacs on a Mac, and opened a file on a remote Centos5 server. Thanks! -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

[O] org-links in tags

Hi all, I think there may be an issue with tags that are defined as links (at least in 8.2.10). For example, if I tag a heading :file:test:, the tags become a file link. This can probably be fixed by adding [^:] to the beginning of the org link regexps? -- Professor John Kitchin Doherty Hall

Re: [O] org-file using tramp + babel?

!! Simple stuff works. It seems to run shell and python fine, although it doesn't load my bashrc file, so some things don't seem to work right that require that. Still, pretty awesome it worked at all! Thanks for the tip about the temp directory! Charles C. Berry writes: > On Thu, 14

Re: [O] how to add some features in a newly added headline?

to collapse > the properties drawer > (org-cycle) > (org-cycle) > (save-excursion ;-> add time stamp >(org-end-of-meta-data t) >(org-time-stamp-inactive '(16)) >(newline) >) > )

Re: [O] How to cite author-date including page number in org-mode?

This will do what you want I think. [[citep:Fong:2006][p. 1445]] John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Require feedback on an idea: move to a central server all my org file and edit from there?

you might adapt this: https://github.com/bbatsov/super-save it saves buffers when they lose focus. You could also have them commit and push with a little more work. John --- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie

Re: [O] display org-link url

; a "bubble" (I can't remember what it's really called :-( ) with the expanded > link > shown. I think you are looking for "tooltip" ;) -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] Attach a Word doc in org mode file

is it possible to attach and then open in org mode files other that > plain text? > Thanks -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

Re: [O] references to arbitrary labels in org and export to latex

would not give the bibliography style link references at the end > of the exported document that you are looking for. -- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu

<    1   2   3   4   5   6   7   8   9   10   >