Re: Org-ref error

2020-01-22 Thread Doyley, Marvin M.
HBeTl9EI2eaqQZhHbOU=s3_3riAscdqtNAzgOuwYB9g0dZVGcp8BNCy_RylYdxU=I1VldbLrMmiVdqzz6xm-zhhiNqpNimU3ZUNsYaZhsyg=Az4I3HmGnsMldRbgCoDskRbN_tDipsjAUXbH482gDA8=> On Wed, Jan 22, 2020 at 8:08 PM Doyley, Marvin M. mailto:m.doy...@rochester.edu>> wrote: -Hi Everybody, For some reason, I keep getting an error (JSON readabl

Re: Org-ref error

2020-01-22 Thread Doyley, Marvin M.
heme.cmu.edu=DwMFaQ=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU=s3_3riAscdqtNAzgOuwYB9g0dZVGcp8BNCy_RylYdxU=I1VldbLrMmiVdqzz6xm-zhhiNqpNimU3ZUNsYaZhsyg=Az4I3HmGnsMldRbgCoDskRbN_tDipsjAUXbH482gDA8=> On Wed, Jan 22, 2020 at 8:08 PM Doyley, Marvin M. mailto:m.doy...@rochester.edu>> wrote: -Hi Everybody, For some rea

Org-ref error

2020-01-22 Thread Doyley, Marvin M.
-Hi Everybody, For some reason, I keep getting an error (JSON readable error: 60) whenever I try to add a BibTex entry to a BibTex file using doi-utils-add-bibtex-entry-from-doi. I would appreciate if someone could tell me how to resolve this problem. Best Wishes, M Here is the backtrace

Re: [O] Issue with internal links

2019-08-09 Thread Doyley, Marvin M.
Hi Nicolas, (add-hook 'org-open-link-functions t) Fixed the problem. Thanks M > On Aug 8, 2019, at 4:53 PM, Nicolas Goaziou wrote: > > Hello, > > "Doyley, Marvin M." writes: > >> Whenever I double click on an internal link I get the following error >>

[O] Issue with internal links

2019-08-08 Thread Doyley, Marvin M.
Hi there, Whenever I double click on an internal link I get the following error “void-function org-pass-link-to-system” Does anybody know how to resolve this. Thanks M PS. Enclosed is the a back trace for a simple file * Testing * One * Two [[*Testing]]. (I also tried [[Testing]] and I

[O] Script for automatically linking to an external file

2019-04-15 Thread Doyley, Marvin M.
Hi there, I trying to make a script that (a) automatically creates a file e.g. notes-04-15-2019.org (b) makes a link to notes-40-15-2019.org automatically in index.org under a specific heading (c) open

Re: [O] Json readable error

2018-07-21 Thread Doyley, Marvin M.
Thanks, I will do the same, since I really use ipython in emacs. Cheers, M > On Jul 21, 2018, at 2:31 PM, Xu Chunyang wrote: > > > Doyley, Marvin M. writes: > >> Hi there, >> >> For some strange reason whenever I switch to org-mode (M-x org-mode), I get &

[O] Json readable error

2018-07-21 Thread Doyley, Marvin M.
Hi there, For some strange reason whenever I switch to org-mode (M-x org-mode), I get json readtable error: 84, which I have been trying to resolve without much success. Have anyone encountered this before or know how to resolve it? This problem could be due to recent change that I have

Re: [O] Problem with python source block

2018-05-26 Thread Doyley, Marvin M.
Thanks John, The problem is now fixed cheers, M > On May 26, 2018, at 10:22 AM, Doyley, Marvin M. <m.doy...@rochester.edu> > wrote: > > Hi there, > > The problem seem to be cause by scimax-org-babel-python.el. > When I disable this works fine, but doing

Re: [O] Problem with python source block

2018-05-26 Thread Doyley, Marvin M.
Hi there, The problem seem to be cause by scimax-org-babel-python.el. When I disable this works fine, but doing this disables asynchronous execution. John do you have any suggestions what is going on ? Cheers, M On May 26, 2018, at 9:16 AM, Doyley, Marvin M. <m.doy...@rochester.

Re: [O] Problem with python source block

2018-05-26 Thread Doyley, Marvin M.
rgument, maybe i>t is >set elsewhere? >Hope it helps. >thibault >Doyley, Marvin M. writes: > Hi there, > > When I run the following code I get an error, does anybody know how to fix > this > > I am using the latest version of org-mode. > > Thanks, > M

[O] Problem with python source block

2018-05-25 Thread Doyley, Marvin M.
Hi there, When I run the following code I get an error, does anybody know how to fix this I am using the latest version of org-mode. Thanks, M #+BEGIN_SRC python :results file import numpy as np import matplotlib.pyplot as plt import seaborn as sns x = np.random.rand(100) y= np.cos(x)

Re: [O] Using org-ref to automatically download articles from Pubmed that satisfies a given search term

2018-01-09 Thread Doyley, Marvin M.
> > It will download a bibtex and pdf (if it knows how to). I doubt you can > do year range query, but certainly authors and keywords. It really > excels at freeform citations as the query. > > Doyley, Marvin M. writes: > >> Hi there, >> >> I am in the pr

Re: [O] Using org-ref to automatically download articles from Pubmed that satisfies a given search term

2018-01-08 Thread Doyley, Marvin M.
EI2eaqQZhHbOU=s3_3riAscdqtNAzgOuwYB9g0dZVGcp8BNCy_RylYdxU=H6YoFReSxOsGNCWFjFOb7BY7fkgnr_5tlTfCQEW7ck8=xak0y049_VKcjFA7_x91GoPfe7gxb85PFs6tKYiZrfI=> > > > On Mon, Jan 8, 2018 at 3:32 PM, Doyley, Marvin M. <m.doy...@rochester.edu > <mailto:m.doy...@rochester.edu>> wrote: > Hi t

[O] Using org-ref to automatically download articles from Pubmed that satisfies a given search term

2018-01-08 Thread Doyley, Marvin M.
Hi there, I am in the process of writing a broad literature review and was wondering if there is a way to get org-ref to search Pubmed and automatically pull (pdf, abstracts, etc) all the papers that satisfy a given search terms (year range, keyword, authors) ? Thanks, M

Re: [O] exporting org to docx

2017-06-28 Thread Doyley, Marvin M.
Hi John, I really appreciate your help. I tried the latest version of ox-word.el that you place in scimax, but got the same error. I suspect that there is a bug in my set-up. I will investigate and keep you posted. Cheers, M > On Jun 27, 2017, at 7:21 PM, Doyley, Marvin M. <

Re: [O] exporting org to docx

2017-06-27 Thread Doyley, Marvin M.
Here is a sample file that I have been using, simple_test.org Description: Binary data simple_test.tex Description: TeX document > On Jun 27, 2017, at 10:53 AM, John Kitchin <jkitc...@andrew.cmu.edu> wrote: > > can you post a small org file that has this problem? >

Re: [O] exporting org to docx

2017-06-24 Thread Doyley, Marvin M.
elm-M-x) > On Jun 24, 2017, at 1:07 PM, John Kitchin <jkitc...@andrew.cmu.edu> wrote: > > what is this function: my-other-delete-trailing-blank-lines > > it appears it is not defined. but is getting called in a before-save-hook. > > Doyley, Marvin M. writes: > >> Hi

[O] exporting org to docx

2017-06-24 Thread Doyley, Marvin M.
Hi there, I am play with John’s ox-word.el function, which us pandoc to convert org via latex to docx. However, when I try to use it, I get the following error helm-M-x: Wrong type argument: stringp, nil Any suggestion on how to resolve this issue. Cheers, M Ps Here is the backtrace

Re: [O] Viewing pdf images

2017-04-12 Thread Doyley, Marvin M.
Hi Eduardo, Thanks for the insight, I really appreciate this. Cheers, M > On Apr 10, 2017, at 12:51 PM, Eduardo Mercovich wrote: > > Hi Marvin. > >> I also agree that in terms of resolution (pix per inch ) pdf and jpg are the >> same. However, pdf (and SVG) allow the

Re: [O] Viewing pdf images

2017-04-09 Thread Doyley, Marvin M.
Hi Eduardo, I also agree that in terms of resolution (pix per inch ) pdf and jpg are the same. However, pdf (and SVG) allow the image to be scaled with little loss in image quality. In my lab we typically save the images in pdf because the most biomedical journals don’t accept SVG file format

Re: [O] Viewing pdf images

2017-03-21 Thread Doyley, Marvin M.
.eps\\'" . imagemagick)) > (add-to-list 'image-file-name-extensions "eps") > (add-to-list 'image-type-file-name-regexps '("\\.pdf\\'" . imagemagick)) > (add-to-list 'image-file-name-extensions "pdf") > (setq imagemagick-types-inhibit (remove 'PDF image

Re: [O] Viewing pdf images

2017-03-17 Thread Doyley, Marvin M.
t; > > On 03/17/2017 01:27 PM, Doyley, Marvin M. wrote: >> Hi there, >> >> For manuscripts, my research group and I typically save images in pdf >> format, much better resolution. It would be nice to view pdf images >> when working in org-mode. Does anybody kno

[O] Viewing pdf images

2017-03-17 Thread Doyley, Marvin M.
Hi there, For manuscripts, my research group and I typically save images in pdf format, much better resolution. It would be nice to view pdf images when working in org-mode. Does anybody know how to view pdf images in org-mode. Thanks, M PS We also work with svg images too, that would also

Re: [O] New markup for revising manuscripts

2017-03-13 Thread Doyley, Marvin M.
_org-2Dmacros_blob_master_README.org=DwMFaQ=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU=s3_3riAscdqtNAzgOuwYB9g0dZVGcp8BNCy_RylYdxU=9mMx6WEAeP-9u7CL3pjKmlORa7XXy-8WSBSwibTQWuo=XDOhI8-iVimfEcDs18oR3i-Yyuic8xnEQRrHQ7lRlqI=> > > Example use: > {{{COLOR(red, This information is important.)}}}

Re: [O] New markup for revising manuscripts

2017-03-13 Thread Doyley, Marvin M.
Hi Eric, I really appreciate this. I will try it out too. Cheers, M On Friday, 10 Mar 2017 at 20:33, Doyley, Marvin M. wrote: > Hi there, > > When revising manuscripts, I usually highlight the changes (response > to reviewer) in red. I use typically do this as follows: > (1)

Re: [O] New markup for revising manuscripts

2017-03-11 Thread Doyley, Marvin M.
proach in > ov-highlighter. It nicely manages multiline comments, but is not part of > org markup though. A downside is you have to store the overlays in the > document to get persistence, and it is easily breakable if others edit > the document without using the package. > > Doyley,

Re: [O] New markup for revising manuscripts

2017-03-11 Thread Doyley, Marvin M.
arameters > "response" > :export (lambda (keyword desc format) > (cond >((eq 'latex format) > (format "\\textcolor{red}{%s}" keyword > :face '(:foreground "red")) > Doyley, Marvin M. writes: > >> Hi John, &

Re: [O] New markup for revising manuscripts

2017-03-11 Thread Doyley, Marvin M.
e.proofpoint.com/v2/url?u=https-3A__github.com_fniessen_org-2Dmacros_blob_master_README.org=DwMFaQ=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU=s3_3riAscdqtNAzgOuwYB9g0dZVGcp8BNCy_RylYdxU=9mMx6WEAeP-9u7CL3pjKmlORa7XXy-8WSBSwibTQWuo=XDOhI8-iVimfEcDs18oR3i-Yyuic8xnEQRrHQ7lRlqI=> > > Example use: >

Re: [O] New markup for revising manuscripts

2017-03-11 Thread Doyley, Marvin M.
s-3A__github.com_fniessen_org-2Dmacros_blob_master_README.org=DwMFaQ=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU=s3_3riAscdqtNAzgOuwYB9g0dZVGcp8BNCy_RylYdxU=9mMx6WEAeP-9u7CL3pjKmlORa7XXy-8WSBSwibTQWuo=XDOhI8-iVimfEcDs18oR3i-Yyuic8xnEQRrHQ7lRlqI=> > > Example use: > {{{COLOR(red, This informati

[O] New markup for revising manuscripts

2017-03-10 Thread Doyley, Marvin M.
Hi there, When revising manuscripts, I usually highlight the changes (response to reviewer) in red. I use typically do this as follows: (1) #+latex_header: \newcommand{\response}[1]{\textcolor{red}{#1}} (2) \response{changes) Is there a more elegant way to do this ? It would be nice if I could

Re: [O] Writing exams

2017-03-10 Thread Doyley, Marvin M.
6 text of first part 7 text of second part 7 text of third part ** second question [...] I can send a copy of the orgfile or the produced pdf to any interested parties. (It seems like maybe attaching files of any size to an email to this list is maybe not good etiquette, but I am a first

Re: [O] Writing exams

2017-03-07 Thread Doyley, Marvin M.
Thanks for the list. I will try them out. Cheers, M > On Mar 7, 2017, at 11:01 AM, Samuel Loury <konubi...@gmail.com> wrote: > > Samuel Loury <konubi...@gmail.com> writes: > >> "Doyley, Marvin M." <m.doy...@rochester.edu> writes: >> >>

[O] Writing exams

2017-03-07 Thread Doyley, Marvin M.
Does anybody have a good system for writing exam in Org-mode ? Thanks, M signature.asc Description: Message signed with OpenPGP using GPGMail

[O] Exams

2017-03-06 Thread Doyley, Marvin M.
Does anybody have a good system for writing exams with Org mode ? Thanks, M signature.asc Description: Message signed with OpenPGP using GPGMail

Re: [O] Elpy in python code blocks

2017-03-05 Thread Doyley, Marvin M.
zD78rXD-wUEOt6CcxfVqtoMXdwipACSFvCfX-WTCeSA=> > > > On Sun, Mar 5, 2017 at 9:10 AM, Doyley, Marvin M. <m.doy...@rochester.edu > <mailto:m.doy...@rochester.edu>> wrote: > Doesn't anybody know how to enable elpy mode when writing python or ipython > code bl

Re: [O] Elpy in python code blocks

2017-03-05 Thread Doyley, Marvin M.
oMXdwipACSFvCfX-WTCeSA=> On Sun, Mar 5, 2017 at 9:10 AM, Doyley, Marvin M. <m.doy...@rochester.edu<mailto:m.doy...@rochester.edu>> wrote: Doesn't anybody know how to enable elpy mode when writing python or ipython code blocks. Thanks, M Sent from my iPad

[O] Elpy in python code blocks

2017-03-05 Thread Doyley, Marvin M.
Doesn't anybody know how to enable elpy mode when writing python or ipython code blocks. Thanks, M Sent from my iPad

Re: [O] Problem with Org-capture mode

2017-01-04 Thread Doyley, Marvin M.
e now. What are your org and emacs versions? On Wed, Jan 4, 2017 at 2:23 PM Doyley, Marvin M. <m.doy...@rochester.edu<mailto:m.doy...@rochester.edu>> wrote: Hi there, Org capture template is not working. I get the following message when I try to use it. Does anybody know how

Re: [O] Problem with Org-capture mode

2017-01-04 Thread Doyley, Marvin M.
Here is the backtrace Debugger entered--Lisp error: (void-function org-set-local) (org-set-local (quote yas/trigger-key) [tab]) (lambda nil (org-set-local (quote yas/trigger-key) [tab]) (define-key yas/keymap [tab] (quote yas/next-field-or-maybe-expand)))()

[O] Problem with Org-capture mode

2017-01-04 Thread Doyley, Marvin M.
Hi there, Org capture template is not working. I get the following message when I try to use it. Does anybody know how to fix this ? Thanks M For information about GNU Emacs and the GNU system, type C-h C-a. Problems while trying to load feature ‘org-mac-message’ File mode specification

Re: [O] latex newcommand in org

2016-05-20 Thread Doyley, Marvin M.
rkowski <mb...@mbork.pl<mailto:mb...@mbork.pl>> wrote: On 2016-05-20, at 20:45, Eric S Fraga <e.fr...@ucl.ac.uk<mailto:e.fr...@ucl.ac.uk>> wrote: > On Friday, 20 May 2016 at 18:10, Doyley, Marvin M. wrote: >> Hi there, >> >> In my group, we typically respon

Re: [O] latex newcommand in org

2016-05-20 Thread Doyley, Marvin M.
Thanks, I will give Eric’s suggestion a go. Cheers, M On May 20, 2016, at 3:50 PM, Marcin Borkowski <mb...@mbork.pl<mailto:mb...@mbork.pl>> wrote: On 2016-05-20, at 20:45, Eric S Fraga <e.fr...@ucl.ac.uk<mailto:e.fr...@ucl.ac.uk>> wrote: On Friday, 20 May 2016 at

[O] latex newcommand in org

2016-05-20 Thread Doyley, Marvin M.
Hi there, In my group, we typically response to reviewers comments (in latex) by first defining the following command in the header \newcommand{\response}[1]{\textcolor{red}{#1}} then marking up the text as follows \response{red text} I try to do the same in org, i.e., putting

Re: [O] org-ref

2016-02-16 Thread Doyley, Marvin M.
l9EI2eaqQZhHbOU=T41F_5QsIVBGYhPPUkgYHUp9iPHgs2rOCjs7rfKaTMU=P4RAQ290xDFvKbWNvyGYOccZLnfZ5U3p_Pb8XtIN_Mc=Bt19oExXxO-LVeTcZiV0U8cwnTeGmv5Tbyy3GyICw8Q=> On Tue, Feb 16, 2016 at 8:52 AM, Doyley, Marvin M. <mdoy...@ur.rochester.edu<mailto:mdoy...@ur.rochester.edu>> wrote: John, I have a quick question. Can I use org-ref

Re: [O] org-ref

2016-02-16 Thread Doyley, Marvin M.
5U3p_Pb8XtIN_Mc=Bt19oExXxO-LVeTcZiV0U8cwnTeGmv5Tbyy3GyICw8Q=> On Tue, Feb 16, 2016 at 8:52 AM, Doyley, Marvin M. <mdoy...@ur.rochester.edu<mailto:mdoy...@ur.rochester.edu>> wrote: John, I have a quick question. Can I use org-ref to reference multiple figures similar to what can be do

[O] CDlatex

2015-12-18 Thread Doyley, Marvin M.
Hi there, I just upgrade my org-mode, and it seems that the function turn-on-org-cdlatex is no longer available, or maybe I am messing something. M ---

[O] Fwd: Converting paragraph to plain lis

2015-12-16 Thread Doyley, Marvin M.
Hi John, I really appreciate this. Cheers, M --- Begin forwarded message: From: John Kitchin > Date: December 16, 2015 at 6:38:51 AM EST To: marvin doyley > Cc:

Re: [O] Minning Org-files

2015-10-10 Thread Doyley, Marvin M.
un some-name (search-arg) > (interactive "sQuery: ") > ; insert code below and change "TODO=\"DONE\"" to search-arg > ) > > > Doyley, Marvin M. writes: > >> Is there anyway of making the search term a variable ? >> >>&g

Re: [O] Minning Org-files

2015-10-10 Thread Doyley, Marvin M.
arch-arg) > (interactive "sQuery: ") > ; insert code below and change "TODO=\"DONE\"" to search-arg > ) > > > Doyley, Marvin M. writes: > >> Is there anyway of making the search term a variable ? >> >>> On Oct 9, 20

Re: [O] Minning Org-files

2015-10-09 Thread Doyley, Marvin M.
let ((entries (org-map-entries >(lambda () > (save-restriction >(org-narrow-to-subtree) >(buffer-string))) >"TODO=\"DONE\""))) > (switch-to-buffer (get-buffer-create "new")) >

[O] Readcube

2015-10-09 Thread Doyley, Marvin M.
Hi there, I have been using readcube to manage my pdfs, awesome software, for more than a year now. However, i would like to link it to my org-mode notes. Does anybody know how to grab readcube links on OS X. Thanks, M --- Marvin Doyley Ph.D. University of Rochester Associate Professor of

[O] Minning Org-files

2015-10-09 Thread Doyley, Marvin M.
Hi there, I have a huge org-file with notes I have taken on various topics (my commonplace org file). Is there an easy way to grab all the entires with a given tag or keyword to a new org-file ? Thanks, M --- Marvin Doyley Ph.D. University of Rochester Associate Professor of Electrical and

Re: [O] Readcube

2015-10-09 Thread Doyley, Marvin M.
roofpoint.com/v2/url?u=http-3A__kitchingroup.cheme.cmu.edu=BQMFaQ=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOU=T41F_5QsIVBGYhPPUkgYHUp9iPHgs2rOCjs7rfKaTMU=Bmxs608u3u9gou8iu8lQaHI6Frs3G0whL1fqtuWMobg=ZxToMNe5xuAc8Syy36ecJk5GpWhp8TT02uSSsS6euCw=> On Fri, Oct 9, 2015 at 8:29 AM, Doyley, Marvin M. <mdo

Re: [O] org-link type

2015-05-13 Thread Doyley, Marvin M.
-3A__kitchingroup.cheme.cmu.edud=AwMFaQc=kbmfwr1Yojg42sGEpaQh5ofMHBeTl9EI2eaqQZhHbOUr=T41F_5QsIVBGYhPPUkgYHUp9iPHgs2rOCjs7rfKaTMUm=ABInZ3aazeW0zibrWLWQE1DBDpTbd1DkoRqwShNReyos=L1Ygq2EOiXSQ_97_KYgP84pmZZpkCcLOtE6I4Wz81KUe= On Wed, May 13, 2015 at 11:36 AM, Doyley, Marvin M. mdoy

[O] org-link type

2015-05-13 Thread Doyley, Marvin M.
Dear all, I would like to change the face (i.e., color and appearance) of a custom org link type and was wonder if there is a easy way to do this. Thanks M

Re: [O] strange behavior with org-babel python

2015-05-12 Thread Doyley, Marvin M.
Thanks, this works when I use :session, but I don’t get any results when I am not running a session. Doy you know why this is the case? Cheers, M On May 11, 2015, at 11:20 PM, Puneeth Chaganti puncha...@gmail.com wrote: On Tue, May 12, 2015 at 6:37 AM, Doyley, Marvin M. mdoy

[O] strange behavior with org-babel python

2015-05-11 Thread Doyley, Marvin M.
Hi there, If run the follow codes I get the following, could someone explain to me what is going wrong (1) The desired results #+BEGIN_SRC python :results output :exports both :session x=5 def foo(x): if x0: return x+1 else: return x-1

Re: [O] Trouble using julia with org-babel

2014-10-31 Thread Doyley, Marvin M.
at /julia/usr/lib/julia/sys.dylib while loading /Users/doyley/.julia/v0.3/PyPlot/src/PyPlot.jl, in expression starting on line 32 On Oct 29, 2014, at 10:53 PM, Ista Zahn istaz...@gmail.com wrote: On Wed, Oct 29, 2014 at 10:09 PM, Doyley, Marvin M. mdoy...@ur.rochester.edu wrote: I am using

[O] Trouble using julia with org-babel

2014-10-29 Thread Doyley, Marvin M.
Hi there, I have been play with julia the last couple of weeks and have been having some issues when I try to use it in org-babel More specifically, It get the following error ERROR: unsupported or misplaced expression using in _start at ./client.jl:394 in _start at

Re: [O] Trouble using julia with org-babel

2014-10-29 Thread Doyley, Marvin M.
I am using release-0.3.0 what version are you using. I am also using ob-julia.el Cheers, M Sent from my iPad On Oct 29, 2014, at 9:43 PM, Ista Zahn istaz...@gmail.com wrote: On Wed, Oct 29, 2014 at 12:35 PM, Doyley, Marvin M. mdoy...@ur.rochester.edu wrote: Hi there, I have been play

[O] inline image size

2014-10-28 Thread Doyley, Marvin M.
Hi there, Does anybody know how to change the size of inline images in org ? I would like to do this using something like #+attr :with 200 thanks M

Re: [O] inline image size

2014-10-28 Thread Doyley, Marvin M.
Hi there, I found the solution http://lists.gnu.org/archive/html/emacs-orgmode/2014-10/msg00038.html cheers, M On Oct 28, 2014, at 9:16 PM, Doyley, Marvin M. mdoy...@ur.rochester.edu wrote: Hi there, Does anybody know how to change the size of inline images in org ? I would like to do

Re: [O] real-time image rendering

2014-10-06 Thread Doyley, Marvin M.
I agree controlling the refresh rate make your approach better. Thanks, M Why better? For which reason? Why not this: --8---cut here---start-8--- (add-hook 'org-babel-after-execute-hook (lambda () (org-display-inline-images nil t)))

[O] real-time image rendering

2014-10-03 Thread Doyley, Marvin M.
Dear All, I am currently using Org mode as a teaching tool for a course that I am teaching this semester. I would like to run some python simulations in class and save the results to a file. I would like to show the results in real time as I change various parameters. I am using iimage-mode

Re: [O] real-time image rendering

2014-10-03 Thread Doyley, Marvin M.
%3D%0Ar=Fwb4ac3v7AhcQoTcqa9wemihF49yp0vUvrJ%2BiX5Re4w%3D%0Am=Z1cxylKq%2BcxQlQYWByza7usVlHiUrctSCJZH%2BrYsd2c%3D%0As=be48c9d91e056d8bd6c1d1087998c148178cd7448476c9cc4260be57508f602b On Fri, Oct 3, 2014 at 5:12 PM, Doyley, Marvin M. mdoy...@ur.rochester.edu wrote: Dear All, I am currently using

Re: [O] real-time image rendering

2014-10-03 Thread Doyley, Marvin M.
=be48c9d91e056d8bd6c1d1087998c148178cd7448476c9cc4260be57508f602b On Fri, Oct 3, 2014 at 5:12 PM, Doyley, Marvin M. mdoy...@ur.rochester.edu wrote: Dear All, I am currently using Org mode as a teaching tool for a course that I am teaching this semester. I would like to run some python simulations in class and save the results

Re: [O] An Org centric research lab: Goodbye MS word, excel, and powerpoint

2014-07-10 Thread Doyley, Marvin M.
Good point. Thanks On Jul 10, 2014, at 8:45 PM, Grant Rettke g...@wisdomandwonder.commailto:g...@wisdomandwonder.com wrote: Doing all of your reproducible research with free software will maximize the number of people who may reproduce your research. MATLAB is a great, great tool, and not many

Re: [O] An Org centric research lab: Goodbye MS word, excel, and powerpoint

2014-07-09 Thread Doyley, Marvin M.
this in your group? Doyley, Marvin M. mdoy...@ur.rochester.edu writes: Dear All, Here is a link to a manuscript my research group produced completely with org https://urldefense.proofpoint.com/v1/url?u=http://medicalimaging.spiedigitallibrary.org/issue.aspxk=p4Ly7qpEBiYPBVenR9G2iQ%3D%3D%0Ar

[O] An Org centric research lab: Goodbye MS word, excel, and powerpoint

2014-07-08 Thread Doyley, Marvin M.
Dear All, Here is a link to a manuscript my research group produced completely with org http://medicalimaging.spiedigitallibrary.org/issue.aspx. For the last 6 years, I have used org mainly for teaching (beamer), productivity, outlining ideas, and note taking. Inspired by John Kitchin's 2013

[O] Pushing and pulling to google calendar

2014-06-29 Thread Doyley, Marvin M.
Hi Everybody, Is there a way to sync org-agenda with google calendar so that I can exploit googles calendar reminder. I wish there was a way to send calendar reminders (pop-up, emails, text message ) from org-mode rather than going through google. Best Wishes, M Sent from my iPad

[O] org-ref in action

2014-06-26 Thread Doyley, Marvin M.
Hi John, Thanks for sharing. My students and I love it. Cheers, M

[O] Sauron and Org-mode

2014-06-07 Thread Doyley, Marvin M.
I go this to work. It turns out that it works only for appointments not deadlines or schedule. Cheers, M

Re: [O] Fwd: Emphasizing multiple lines

2014-06-05 Thread Doyley, Marvin M.
Yup, looks like that's how it works over here, too -- as far as I know it won't automatically display the face when you close emphasis past a newline. It's only cosmetic, though -- export and whatnot will parse it correctly. My guess is there's no easy way around it... Hi Eric, Since this is

[O] Fwd: Emphasizing multiple lines

2014-06-04 Thread Doyley, Marvin M.
Check out the docstring for org-emphasis-regexp-components -- the fifth element determines how many newlines can be spanned by emphasis markers. For instance, I've got: (setf (nth 4 org-emphasis-regexp-components) 3) Hope that helps. E Hi Eric, This works like a charm. The

Re: [O] Counting number of children under heading

2014-04-17 Thread Doyley, Marvin M.
Hi Thorsten, It is not working like a charm. Thanks M