Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
I already tried three version: macports, build from sources and the bundled version. All have this problem. So, I guess it has to do with the way emacs interacts with my Python, but I don't know how to debug it. Is there no one here that is a python/orgmode ninja that can give me a hand here? Thanks. Dror On Tue, Jun 2, 2015 at 2:21 PM, Ken Mankoff wrote: > > Switch to an emacs that doesn't have this bug on your system. Try > Homebrew-installed versions (although I know you aren't supposed to mix > brew and macports, and I think you use macports). > > -k. > > On 2015-06-02 at 01:49, Dror Atariah wrote: > > No ideas? Please, I really don't know how to tackle this. Thanks. > > -- Dror Atariah, Ph.D. de.linkedin.com/in/atariah
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
No ideas? Please, I really don't know how to tackle this. Thanks. -- Dror Atariah, PhD Sent from mobile; excuse my brevity. On May 26, 2015 8:39 PM, "Dror Atariah" wrote: > > > On Tue, May 26, 2015 at 4:02 PM, Ken Mankoff wrote: > >> >> >> Where you see everything printed twice. I notice that in addition, you >> have >> >> > r/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/py6499_X0''', 'exec')); >> >> at the top of your buffer, and I do not. I think the "exec" might be >> causing everything to echo as it runs, so everything is printed 2x, and >> that confuses Org, and it is not able to capture your filename. >> > > It is the most promising suspect so far, but still I don't understand > where is it coming from? BTW, I noticed that it is not the same directory > as the one where the generated temp files are stored. >
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
On Tue, May 26, 2015 at 4:02 PM, Ken Mankoff wrote: > > > Where you see everything printed twice. I notice that in addition, you have > > > r/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/py6499_X0''', 'exec')); > > at the top of your buffer, and I do not. I think the "exec" might be > causing everything to echo as it runs, so everything is printed 2x, and > that confuses Org, and it is not able to capture your filename. > It is the most promising suspect so far, but still I don't understand where is it coming from? BTW, I noticed that it is not the same directory as the one where the generated temp files are stored.
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
On Tue, May 26, 2015 at 4:02 PM, Ken Mankoff wrote:
>
> On 2015-05-26 at 09:26, Dror Atariah wrote:
> >> #+BEGIN_SRC python :session with_matplotlib :results file :exports both
> >> import matplotlib
> >> matplotlib.use('Agg')
> >> import matplotlib.pyplot as plt
> >> fig=plt.figure(figsize=(3,2))# 4
> >> plt.plot([1,3,2]) # 3
> >> plt.savefig('myfig.png') # 2
> >> 'myfig.png' # 1
> >> #+END_SRC
> >>
> >> #+RESULTS:
> >> [[file:myfig.png]]
> >>
> >
> > As I mentioned before, if I evaluate the second block as-is I get the
> > error. However, if I comment out all the lines except #1 then the code
> > returns the correct results block. Then, I started to add the numbered
> > lines. Adding #2 and #3 still doesn't break the behavior. Once adding
> line
> > #4 the behavior breaks. Maybe this observation can be helpful? This
> happens
> > both when starting Emacs -Q or without -Q.
>
>
> Still no solution but a few comments:
>
> 1) What you write here and on SE are not the same. Please cut-and-paste
> because details matter. For example, the SE code has "import
> matplotlib.pyplot" and then "plt.figure" but that code crashes because you
> did not import "as plt" like you do here...
>
I see. Let's focus on the code posted in this thread and assume that the
problem is not related to python mistakes.
>
> 2) It seems to be an echo issue. In my *with_matplotlib* buffer in Emacs,
> I see:
>
> #+BEGIN_EXAMPLE
> Python 2.7.9 |Anaconda 2.2.0 (x86_64)| (default, Dec 15 2014, 10:37:34)
> [GCC 4.2.1 (Apple Inc. build 5577)] on darwin
> Type "help", "copyright", "credits" or "license" for more information.
> Anaconda is brought to you by Continuum Analytics.
> Please check out: http://continuum.io/thanks and https://binstar.org
> >>> import matplotlib
> >>> matplotlib.use('Agg')
> >>> import matplotlib.pyplot as plt
> fig=plt.figure(figsize=(3,2))
> plt.plot([1,3,2])
>
> plt.savefig('myfig.png')
> 'myfig.png'
>
> open('/var/folders/bl/trcxdptd1_q4k6q5fdhvp2m0gn/T/babel-52565cmH/python-525659vF',
> 'w').write(str(_))
> 'org_babel_python_eoe'
> >>> []
> >>> 'myfig.png'
> >>> 'org_babel_python_eoe'
> >>>
> #+END_EXAMPLE
>
> Where you see everything printed twice. I notice that in addition, you have
>
> > r/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/py6499_X0''', 'exec'));
>
> at the top of your buffer, and I do not. I think the "exec" might be
> causing everything to echo as it runs, so everything is printed 2x, and
> that confuses Org, and it is not able to capture your filename.
>
This sounds like a promising hint. Where is this first line coming from?
How can I disable this double printing or figure out why is happening?
>
> -k.
>
>
--
Dror Atariah, Ph.D.
de.linkedin.com/in/atariah
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
On Mon, May 25, 2015 at 8:30 PM, John Kitchin
wrote:
> With emacs -Q, and this org file:
>
> #+BEGIN_SRC emacs-lisp
> (org-babel-do-load-languages
> 'org-babel-load-languages
> '((emacs-lisp . t)
>(python . t)))
> #+END_SRC
>
> #+RESULTS:
>
> #+BEGIN_SRC python :session with_matplotlib :results file :exports both
> import matplotlib
> matplotlib.use('Agg')
> import matplotlib.pyplot as plt
> fig=plt.figure(figsize=(3,2))# 4
> plt.plot([1,3,2]) # 3
> plt.savefig('myfig.png') # 2
> 'myfig.png' # 1
> #+END_SRC
>
> #+RESULTS:
> [[file:myfig.png]]
>
>
As I mentioned before, if I evaluate the second block as-is I get the
error. However, if I comment out all the lines except #1 then the code
returns the correct results block. Then, I started to add the numbered
lines. Adding #2 and #3 still doesn't break the behavior. Once adding line
#4 the behavior breaks. Maybe this observation can be helpful? This happens
both when starting Emacs -Q or without -Q.
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
On Tue, May 26, 2015 at 3:15 PM, Ken Mankoff wrote: > > On 2015-05-26 at 09:11, Dror Atariah wrote: > > I use emacs that come from MacPorts, so for -Q option I start it using: > > /Applications/MacPorts/Emacs.app/Contents/MacOS/Emacs -Q > > Consider using different compilation options, and/or a different Emacs.app > package. It seems like that might be the easiest way to solve this problem. > This problem also happens when I use the "standard" OS X Emacs.app I really don't understand what's going on here. Most likely it has to to with my settings, but how and how to debug is beyond my reach. > > -k. > -- Dror Atariah, Ph.D. de.linkedin.com/in/atariah
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
On Tue, May 26, 2015 at 3:49 AM, Ken Mankoff wrote: > > Nick Dokos removed from Cc. > > On 2015-05-25 at 14:22, Dror Atariah wrote: > > I tried to evaluate the problematic file using =emacs -Q= and the problem > > is the same. > > Sorry I can't help much. It works on my system. > > The only difference I see is my python version: > > #+BEGIN_SRC python :session background :results raw > import sys > sys.version > #+END_SRC > > #+RESULTS: > 2.7.9 |Anaconda 2.2.0 (x86_64)| (default, Dec 15 2014, 10:37:34) > [GCC 4.2.1 (Apple Inc. build 5577)] > I doesn't work also when I try to use the 2.7 version of Python. > > > Following is the section of my =init.el= that deals with org-mode (if you > > need more, let me know): > > If the bug exists with "emacs -Q", then sending a large init file is just > noise and not helpful. A minimum working example would be similar to your > previous email, but include the necessary Org setup code to execute Python, > and nothing else. > I believe this is the example that John provided; which doesn't work for me... How can I make sure that my emacs -Q is really "clean"? > > -k. > > -- Dror Atariah, Ph.D. de.linkedin.com/in/atariah
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
On Mon, May 25, 2015 at 8:30 PM, John Kitchin
wrote:
> With emacs -Q, and this org file:
>
> #+BEGIN_SRC emacs-lisp
> (org-babel-do-load-languages
> 'org-babel-load-languages
> '((emacs-lisp . t)
>(python . t)))
> #+END_SRC
>
> #+RESULTS:
>
> #+BEGIN_SRC python :session with_matplotlib :results file :exports both
> import matplotlib
> matplotlib.use('Agg')
> import matplotlib.pyplot as plt
> fig=plt.figure(figsize=(3,2))
> plt.plot([1,3,2])
> plt.savefig('myfig.png')
> 'myfig.png'
> #+END_SRC
>
> #+RESULTS:
> [[file:myfig.png]]
>
> I get what you expect to happen. In my customized emacs, I get something
> else that is more like you see.
>
I use emacs that come from MacPorts, so for -Q option I start it using:
/Applications/MacPorts/Emacs.app/Contents/MacOS/Emacs -Q
Your minimal example doesn't work for me, and in the results block I get:
#+RESULTS:
[[file:]]
This is basically, the same problematic result that I get when using my
regular initialized emacs.
>
>
> John
>
> ---
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> http://kitchingroup.cheme.cmu.edu
>
>
> On Mon, May 25, 2015 at 2:22 PM, Dror Atariah wrote:
>
>> On Mon, May 25, 2015 at 7:29 PM, Ken Mankoff wrote:
>>
>>>
>>> On 2015-05-25 at 13:25, Dror Atariah wrote:
>>> > I am sorry for reposting, but I'm still in the dark. Am I the only one
>>> who
>>> > experience this kind of issue?
>>>
>>> Don't know.
>>>
>>> > Did someone managed to reproduce the problem?
>>>
>>> I could not reproduce it.
>>>
>>> > Does anyone see this message? :)
>>>
>>> Yes.
>>>
>>
>> Thanks for your reply :)
>>
>>
>>>
>>> I'm on Mac too, which is where your problem is. Are you starting with
>>> "emacs -Q"? I haven't seen you post a full MWE with both =init.el= and =
>>> test.org=. You did provide a test Org file but it wasn't clear to me if
>>> that was being used with emacs -Q.
>>>
>>> I tried to evaluate the problematic file using =emacs -Q= and the
>> problem is the same.
>>
>> Following is the section of my =init.el= that deals with org-mode (if you
>> need more, let me know):
>>
>>
>> --8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--
>> ;;;
>> ;; Org Mode related
>> ;;;
>>
>> (setq org-directory "~/Dropbox/org")
>>
>> ;; Set a location for the list of agena files
>> (setq org-agenda-files "~/.emacs.d/agenda_files")
>>
>> ;; Assigns org-mode to .org files
>> (add-to-list 'auto-mode-alist '("\\.org$" . org-mode))
>> (define-key global-map "\C-cl" 'org-store-link)
>> (define-key global-map "\C-ca" 'org-agenda)
>> (setq org-log-done t)
>> (when window-system (require 'org-mouse))
>>
>> ;; Auto enable flyspell-mode
>> (add-hook 'org-mode-hook 'turn-on-flyspell)
>>
>> ;; Auto fill minor mode in org files
>> (add-hook 'org-mode-hook 'turn-on-auto-fill)
>>
>> ;; Enable org-indent-mode for org buffers
>> (add-hook 'org-mode-hook
>> (lambda ()(org-indent-mode t)) t)
>>
>> ;; Use text-mode abbrev table in org-mode
>> (add-hook 'org-mode-hook '(lambda () (setq local-abbrev-table
>> text-mode-abbrev-table)))
>>
>> ;; Enables selection using SHIFT, while maintaining useful actions
>> ;; related to SHITF in org
>> (setq org-support-shift-select 't)
>>
>> ;; Enable smart qoutes (http://stackoverflow.com/q/15097114/671013)
>> (setq org-export-with-smart-quotes t)
>>
>> ;; Customize the TODO-like keywords
>> (setq org-use-fast-todo-selection t)
>> (setq org-todo-keywords
>> '((sequence "TODO(t)" "PROCESS(p@/!)" "|" "DONE(d!)" "CANCELED(c@
>> /!)")))
>> (setq org-todo-keyword-faces
>> (quote (("TODO" :foreground "red" :weight bold)
>> ("PROCESS" :foreground "blue" :weight bold)
>> ("DONE" :f
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
On Mon, May 25, 2015 at 7:29 PM, Ken Mankoff wrote:
>
> On 2015-05-25 at 13:25, Dror Atariah wrote:
> > I am sorry for reposting, but I'm still in the dark. Am I the only one
> who
> > experience this kind of issue?
>
> Don't know.
>
> > Did someone managed to reproduce the problem?
>
> I could not reproduce it.
>
> > Does anyone see this message? :)
>
> Yes.
>
Thanks for your reply :)
>
> I'm on Mac too, which is where your problem is. Are you starting with
> "emacs -Q"? I haven't seen you post a full MWE with both =init.el= and =
> test.org=. You did provide a test Org file but it wasn't clear to me if
> that was being used with emacs -Q.
>
> I tried to evaluate the problematic file using =emacs -Q= and the problem
is the same.
Following is the section of my =init.el= that deals with org-mode (if you
need more, let me know):
--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--8<--
;;;
;; Org Mode related
;;;
(setq org-directory "~/Dropbox/org")
;; Set a location for the list of agena files
(setq org-agenda-files "~/.emacs.d/agenda_files")
;; Assigns org-mode to .org files
(add-to-list 'auto-mode-alist '("\\.org$" . org-mode))
(define-key global-map "\C-cl" 'org-store-link)
(define-key global-map "\C-ca" 'org-agenda)
(setq org-log-done t)
(when window-system (require 'org-mouse))
;; Auto enable flyspell-mode
(add-hook 'org-mode-hook 'turn-on-flyspell)
;; Auto fill minor mode in org files
(add-hook 'org-mode-hook 'turn-on-auto-fill)
;; Enable org-indent-mode for org buffers
(add-hook 'org-mode-hook
(lambda ()(org-indent-mode t)) t)
;; Use text-mode abbrev table in org-mode
(add-hook 'org-mode-hook '(lambda () (setq local-abbrev-table
text-mode-abbrev-table)))
;; Enables selection using SHIFT, while maintaining useful actions
;; related to SHITF in org
(setq org-support-shift-select 't)
;; Enable smart qoutes (http://stackoverflow.com/q/15097114/671013)
(setq org-export-with-smart-quotes t)
;; Customize the TODO-like keywords
(setq org-use-fast-todo-selection t)
(setq org-todo-keywords
'((sequence "TODO(t)" "PROCESS(p@/!)" "|" "DONE(d!)" "CANCELED(c@
/!)")))
(setq org-todo-keyword-faces
(quote (("TODO" :foreground "red" :weight bold)
("PROCESS" :foreground "blue" :weight bold)
("DONE" :foreground "forest green" :weight bold)
("CANCELLED" :foreground "forest green" :weight bold
(setq org-log-into-drawer t)
;; Capture-org
(setq org-default-notes-file (concat org-directory "/notes.org"))
(define-key global-map "\C-cc" 'org-capture)
(setq org-capture-templates
(quote (("t" "todo" entry (file (concat org-directory "/gtd.org"))
"* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
("n" "note" entry (file (concat org-directory "/gtd.org"))
"* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
("j" "Journal" entry (file+datetree (concat org-directory "/
diary.org"))
"* %?\n%U\n" :clock-in t :clock-resume t)
("v" "Vocabulary" entry
(file+headline (concat org-directory "/vocab.org")
"Vocabulary")
"* %^{The word} :drill:\n:PROPERTIES:\n:Part-of-speech:
%^{Part of speech|verb|noun|adj|adv}\n:END:\n %t\n %^{Extended word (may be
empty)} \n** Answer \n%^{The definition}")
)))
;; Make use of refTeX in org-mode
(defun org-mode-reftex-setup ()
"Setups RefTeX to be used with a org file. Code is based on
http://www.mfasold.net/blog/2009/02/using-emacs-org-mode-to-draft-papers/.
Once you run this, you will be asked to set a master file of the org."
(interactive)
(load-library "reftex")
(and (buffer-file-name)
(file-exists-p (buffer-file-name))
(reftex-parse-all))
(define-key org-mode-map (kbd "C-c )") 'reftex-citation)
)
;; Open indirect buffer in new frame
(setq org-indirect-buffer-display 'new-frame)
;; Set common TAGS
;; Check:
http://sachachua.com/blog/2008/01/tagging-in-org-plus-bonus-code-for-timeclocks-and-tags/
(setq org-tag-alist '(
("PRIVATE" . ?p)
(:startgroup . nil)
("WORK
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
I am sorry for reposting, but I'm still in the dark. Am I the only one who
experience this kind of issue? Did someone managed to reproduce the
problem? Does anyone see this message? :)
On Sat, May 23, 2015 at 8:49 PM, Dror Atariah wrote:
> I am still helpless here. Any idea how to debug the problem? I would be
> happy to provide any kind of help, but I just cannot do it myself.
>
> Further findings:
> 1) I don't think that matplotlib changes Python's '_', since the tmp file
> that contains the content of '_' is correct.
> 2) Somehow, emacs/orgmode fails to extract the filename.
> 3) It doesn't work also when using emacs 24.5 and orgmode 8.2.10.
>
>
> Following is an org file that tries to summarize the issue:
>
> #+TITLE: Integrate matplotlib figures in an org mode buffer
> * Goal
> The ultimate goal is to use org-babel as a replacement of IPython. The
> first motivation is to enable an easier version controling of the
> document. The first challenge I faced is integration of plots returned
> by ~matplotlib~ in the org buffer.
> * Capturing filename
>
> I would like to use (babel) orgmode as an interactive python
> notebook. Therefore, in order to allow the various code blocks to
> "know" each other, it is important to use the ~:session~
> option. However, once ~:session~ is used, together with ~matplotlib~
> the desired behavior is no longer in place.
>
> * Clean testing, no Matplotlib
> For the sake of testing, the following merely suppose to return the
> filename
>
> #+BEGIN_SRC python :session no_matplotlib :results file :exports both
> x = 'hello '
> y = 'world'
> z = x + y
> 'foo.bar'
> #+END_SRC
>
> #+RESULTS:
> [[file:foo.bar]]
>
> *Passed* Indeed, the ~RESULTS~ block contains a link to the filename
> indicated by the last string.
>
> * Importing Matplotlib
>
> The following minimal example should generate a simple figure,
> ~myfig.png~, and orgmode should capture it and interpret it as a
> filename to be used by the following ~RESULTS~ block.
>
> #+BEGIN_SRC python :session with_matplotlib :results file :exports both
> import matplotlib
> matplotlib.use('Agg')
> import matplotlib.pyplot as plt
> fig=plt.figure(figsize=(3,2))
> plt.plot([1,3,2])
> plt.savefig('myfig.png')
> 'myfig.png'
> #+END_SRC
>
> #+RESULTS:
> [[file:]]
>
> *Failed!* This time, it doesn't work anymore. The file ~myfig.png~ is
> properly generated, but the last string is not captured by
> ~matplotlib~. Following is the content of the corresponding
> interactive python session:
>
> #+BEGIN_SRC
> Process with_matplotlib finished
> Python 3.4.3 (default, Mar 10 2015, 14:53:35)
> [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)] on darwin
> Type "help", "copyright", "credits" or "license" for more information.
> >>> >>> >>> ,
> '''/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/py32771xVI''', 'exec'));
> import matplotlib
> >>> import matplotlib
> matplotlib.use('Agg')
> matplotlib.use('Agg')
> import matplotlib.pyplot as plt
> import matplotlib.pyplot as plt
> fig=plt.figure(figsize=(3,2))
> fig=plt.figure(figsize=(3,2))
> plt.plot([1,3,2])
> plt.plot([1,3,2])
> plt.savefig('myfig.png')
> plt.savefig('myfig.png')
> 'myfig.png'
> 'myfig.png'
>
>
> open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-32771x4j/python-32771-fO',
> 'w').write(str(_))
> open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-32771x4j/python-32771-fO',
> 'w').write(str(_))
>
>
>
>
> 'org_babel_python_eoe'
> 'org_babel_python_eoe'
> >>> []
> >>> 'myfig.png'
> >>> >>> 9
> >>> >>> >>> 'org_babel_python_eoe'
> >>>
> #+END_SRC
>
> * Some background
>
> ** Python Version
> #+BEGIN_SRC python :session background :results raw
> import sys
> sys.version
> #+END_SRC
>
> #+RESULTS:
> 3.4.3 (default, Mar 10 2015, 14:53:35)
> [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)]
>
> ** Matplotlib version
> #+BEGIN_SRC python :session background :results raw
> import matplotlib
> matplotlib.__version__
> #+END_SRC
>
> #+RESULTS:
> 1.4.3
>
> ** System
> I am running Emacs version ~GNU Emacs 24.5.1 (x86_64-apple-darwin14.1.0,
> NS apple-appkit-1344.72) of 2015-04-19 on tenten-slave.macports.org~
>
> The orgmode version is: ~Org-mode version 8.2.10
> (8.2.10-40-gc763fa-elpaplus @
> /Users/drorata/.emacs.d/elpa/org-plus-contrib-20150518/)~
>
> ** Stackoverflow reference
> I also posted a question in the SE network:
> [[
> http://emacs.stackexchange.com/questions/11075/org-mode-python-session-does-not-return-a-file-name
> ]]
>
> * Question
> So, my question is how to tackle/debug this issue? Can someone give me
> a hand here? That would be really great! Thanks!
>
>
--
Dror Atariah, Ph.D.
de.linkedin.com/in/atariah
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
I am still helpless here. Any idea how to debug the problem? I would be
happy to provide any kind of help, but I just cannot do it myself.
Further findings:
1) I don't think that matplotlib changes Python's '_', since the tmp file
that contains the content of '_' is correct.
2) Somehow, emacs/orgmode fails to extract the filename.
3) It doesn't work also when using emacs 24.5 and orgmode 8.2.10.
Following is an org file that tries to summarize the issue:
#+TITLE: Integrate matplotlib figures in an org mode buffer
* Goal
The ultimate goal is to use org-babel as a replacement of IPython. The
first motivation is to enable an easier version controling of the
document. The first challenge I faced is integration of plots returned
by ~matplotlib~ in the org buffer.
* Capturing filename
I would like to use (babel) orgmode as an interactive python
notebook. Therefore, in order to allow the various code blocks to
"know" each other, it is important to use the ~:session~
option. However, once ~:session~ is used, together with ~matplotlib~
the desired behavior is no longer in place.
* Clean testing, no Matplotlib
For the sake of testing, the following merely suppose to return the filename
#+BEGIN_SRC python :session no_matplotlib :results file :exports both
x = 'hello '
y = 'world'
z = x + y
'foo.bar'
#+END_SRC
#+RESULTS:
[[file:foo.bar]]
*Passed* Indeed, the ~RESULTS~ block contains a link to the filename
indicated by the last string.
* Importing Matplotlib
The following minimal example should generate a simple figure,
~myfig.png~, and orgmode should capture it and interpret it as a
filename to be used by the following ~RESULTS~ block.
#+BEGIN_SRC python :session with_matplotlib :results file :exports both
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
plt.savefig('myfig.png')
'myfig.png'
#+END_SRC
#+RESULTS:
[[file:]]
*Failed!* This time, it doesn't work anymore. The file ~myfig.png~ is
properly generated, but the last string is not captured by
~matplotlib~. Following is the content of the corresponding
interactive python session:
#+BEGIN_SRC
Process with_matplotlib finished
Python 3.4.3 (default, Mar 10 2015, 14:53:35)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> >>> >>> ,
'''/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/py32771xVI''', 'exec'));
import matplotlib
>>> import matplotlib
matplotlib.use('Agg')
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
plt.plot([1,3,2])
plt.savefig('myfig.png')
plt.savefig('myfig.png')
'myfig.png'
'myfig.png'
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-32771x4j/python-32771-fO',
'w').write(str(_))
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-32771x4j/python-32771-fO',
'w').write(str(_))
'org_babel_python_eoe'
'org_babel_python_eoe'
>>> []
>>> 'myfig.png'
>>> >>> 9
>>> >>> >>> 'org_babel_python_eoe'
>>>
#+END_SRC
* Some background
** Python Version
#+BEGIN_SRC python :session background :results raw
import sys
sys.version
#+END_SRC
#+RESULTS:
3.4.3 (default, Mar 10 2015, 14:53:35)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)]
** Matplotlib version
#+BEGIN_SRC python :session background :results raw
import matplotlib
matplotlib.__version__
#+END_SRC
#+RESULTS:
1.4.3
** System
I am running Emacs version ~GNU Emacs 24.5.1 (x86_64-apple-darwin14.1.0, NS
apple-appkit-1344.72) of 2015-04-19 on tenten-slave.macports.org~
The orgmode version is: ~Org-mode version 8.2.10
(8.2.10-40-gc763fa-elpaplus @
/Users/drorata/.emacs.d/elpa/org-plus-contrib-20150518/)~
** Stackoverflow reference
I also posted a question in the SE network:
[[
http://emacs.stackexchange.com/questions/11075/org-mode-python-session-does-not-return-a-file-name
]]
* Question
So, my question is how to tackle/debug this issue? Can someone give me
a hand here? That would be really great! Thanks!
[O] Capturing file name from python session when using matplotlib
* Capturing filename
I would like to use (babel) orgmode as an interactive python
notebook. Therefore, in order to allow the various code blocks to
"know" each other, it is important to use the ~:session~
option. However, once ~:session~ is used, together with ~matplotlib~
the desired behavior is no longer in place.
* Clean testing, no Matplotlib
For the sake of testing, the following merely suppose to return the filename
#+BEGIN_SRC python :session no_matplotlib :results file :exports both
x = 'hello '
y = 'world'
z = x + y
'foo.bar'
#+END_SRC
#+RESULTS:
[[file:foo.bar]]
*Passed* Indeed, the ~RESULTS~ block contains a link to the filename
indicated by the last string.
* Importing Matplotlib
The following minimal example should generate a simple figure,
~myfig.png~, and orgmode should capture it and interpret it as a
filename to be used by the following ~RESULTS~ block.
#+BEGIN_SRC python :session with_matplotlib :results file
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
plt.savefig('myfig.png')
'myfig.png'
#+END_SRC
#+RESULTS:
[[file:]]
*Failed!* This time, it doesn't work anymore. The file ~myfig.png~ is
properly generated, but the last string is not captured by
~matplotlib~. Following is the content of the corresponding
interactive python session:
#+BEGIN_SRC
Python 3.4.3 (default, Feb 27 2015, 00:22:26)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> >>> >>> ,
'''/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/py27084Z6S''', 'exec'));
import matplotlib
import matplotlib
matplotlib.use('Agg')
>>> matplotlib.use('Agg')
import matplotlib.pyplot as plt
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
plt.plot([1,3,2])
plt.savefig('myfig.png')
plt.savefig('myfig.png')
'myfig.png'
'myfig.png'
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-2708423D/python-27084mEZ',
'w').write(str(_))
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-2708423D/python-27084mEZ',
'w').write(str(_))
'org_babel_python_eoe'
'org_babel_python_eoe'
>>> >>> >>> >>> []
>>> 'myfig.png'
>>> >>> 9
>>> >>> >>> 'org_babel_python_eoe'
>>>
#+END_SRC
* Some background
** Python Version
#+BEGIN_SRC python :session background :results output
import sys
sys.version
#+END_SRC
#+RESULTS:
: import sys
: >>> sys.version
: '3.4.3 (default, Feb 27 2015, 00:22:26) \n[GCC 4.2.1 Compatible Apple
LLVM 6.0 (clang-600.0.56)]'
: sys.executable
: '/Users/drorata/py-envs/generic3.4/bin/python'
:
:
** System
I am running Emacs version ~GNU Emacs 24.4.51.1 (x86_64-apple-darwin14.1.0,
NS apple-appkit-1344.72) of 2015-02-02 on boxname.local~
The orgmode version is: ~Org-mode version 8.2.10
(8.2.10-40-gc763fa-elpaplus @
/Users/username/.emacs.d/elpa/org-plus-contrib-20150504/)~
** Stackoverflow reference
I also posted a question in the SE network:
[[
http://emacs.stackexchange.com/questions/11075/org-mode-python-session-does-not-return-a-file-name
]]
* Question
So, my question is how to tackle/debug this issue? Can someone give me
a hand here? That would be really great! Thanks!
--
Dror Atariah, Ph.D.
de.linkedin.com/in/atariah
Re: [O] [Orgmode] Unable to capture the file name generated using matplotlib
Obviously, I have the directory in place, and the file is actually saved
properly in it. The version is use is:
Org-mode version 8.2.10 (8.2.10-40-gc763fa-elpaplus @
/Users/drorata/.emacs.d/elpa/org-plus-contrib-20150504/)
Finally, here is the output that I have in the python interactive session:
---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---
>>> import matplotlib
import matplotlib
>>> matplotlib.use('Agg')
matplotlib.use('Agg')
import matplotlib.pyplot as plt
>>> import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
>>> fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
>>> plt.plot([1,3,2])
fig.tight_layout()
fig.tight_layout()
plt.savefig('images/myfig.png')
plt.savefig('images/myfig.png')
'images/myfig.png' # return this to org-mode
'images/myfig.png' # return this to org-mode
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-22151hFS/python-22151B4O',
'w').write(str(_))
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b18gn/T/babel-22151hFS/python-22151B4O',
'w').write(str(_))
'org_babel_python_eoe'
'org_babel_python_eoe'
[]
>>> 'images/myfig.png'
>>> >>> 16
>>> >>> >>> 'org_babel_python_eoe'
>>>
---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<---8<-------
>From this it seems like the right thing happens, but still org doesn't
manage to capture it. I'm still in the dark. At work I manage to get the
images inserted properly and it is simply fabulous! I want it also on my
mac!!! :)
Thanks in advance,
Dror
On Sat, May 2, 2015 at 7:11 PM, Nick Dokos wrote:
> Dror Atariah writes:
>
> > How can I solve this problem?
>
> I should have added: ... after I create the "images" directory.
> I don't think the savefig() can do that.
>
>
>
[O] [Orgmode] Unable to capture the file name generated using matplotlib
Consider the following example (from the documentation):
---8<---8<---8<---8<---8<---8<---8<---8<---8<---
#+begin_src python :session :results file
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
fig.tight_layout()
plt.savefig('images/myfig.pdf')
'images/myfig.pdf' # return this to org-mode
#+end_src
---8<---8<---8<---8<---8<---8<---8<---8<---8<---
It should return something like
---8<---8<---8<---8<---8<---8<---8<---8<---8<---
#+RESULTS:
[[file:images/myfig.pdf]]
---8<---8<---8<---8<---8<---8<---8<---8<---8<---
But for me it returns merely
---8<---8<---8<---8<---8<---8<---8<---8<---8<---
#+RESULTS:
[[file:]]
---8<---8<---8<---8<---8<---8<---8<---8<---8<---
That is, it doesn't capture the file name that should be the last
evaluation.
How can I solve this problem?
Re: [O] org-mode and python pandas
Using the tabulate python module it is possible to have the following
"inline" workaround:
8<8<8<8<8<8<8<
#+BEGIN_SRC python :results raw
import pandas as pd
import numpy as np
from tabulate import tabulate
df = pd.DataFrame(np.random.random((4,3)), columns=['A','B','C'])
print("foo")
return(tabulate(df, headers="keys", tablefmt="orgtbl"))
#+END_SRC
#+RESULTS:
| |A |B |C |
|---+--+--+--|
| 0 | 0.754799 | 0.492722 | 0.144595 |
| 1 | 0.198475 | 0.417721 | 0.083459 |
| 2 | 0.645011 | 0.444857 | 0.278874 |
| 3 | 0.314883 | 0.7521 | 0.789418 |
8<8<8<8<8<8<8<
However, this is not optimal, mainly because it pollutes the code block.
Note, that the :results is set to `raw`.
A brief discussion with Dov, yielded the following better workaround:
8<8<8<8<
8<8<8<
(setq org-babel-python-wrapper-method "
def main():
%s
res = main()
if 'pandas.core.frame.DataFrame' in str(type(res)):
from tabulate import tabulate
out = tabulate(res, headers='keys', tablefmt='orgtbl')
else:
out = str(res)
open('%s', 'w').write(out)")
8<8<8<8<
8<8<8<
This allows a nice output of pandas.DataFrame (again when using :results
raw). Unfortunately, this wrapper has no influence in the case when
:session is used. To that end, it is possible to hack
8<8<8<8<
8<8<8<
(defun org-babel-python-evaluate-session
(session body &optional result-type result-params)
"Pass BODY to the Python process in SESSION.
If RESULT-TYPE equals 'output then return standard output as a
string. If RESULT-TYPE equals 'value then return the value of the
last statement in BODY, as elisp."
(let* ((send-wait (lambda () (comint-send-input nil t) (sleep-for 0 5)))
(dump-last-value
(lambda
(tmp-file pp)
(mapc
(lambda (statement) (insert statement) (funcall send-wait))
(if pp
(list
"import pprint"
(format "open('%s', 'w').write(pprint.pformat(_))"
(org-babel-process-file-name tmp-file 'noquote)))
(list (format "_org_tmp = _;
if 'pandas.core.frame.DataFrame' in str(type(_org_tmp)):
from tabulate import tabulate
_org_out = tabulate(_org_tmp, headers='keys', tablefmt='orgtbl')
else:
_org_out = _org_tmp
open('%s', 'w').write(str(_org_out))"
(org-babel-process-file-name tmp-file
'noquote)))
(input-body (lambda (body)
(mapc (lambda (line) (insert line) (funcall send-wait))
(split-string body "[\r\n]"))
(funcall send-wait)))
(results
(case result-type
(output
(mapconcat
#'org-babel-trim
(butlast
(org-babel-comint-with-output
(session org-babel-python-eoe-indicator t body)
(funcall input-body body)
(funcall send-wait) (funcall send-wait)
(insert org-babel-python-eoe-indicator)
(funcall send-wait))
2) "\n"))
(value
(let ((tmp-file (org-babel-temp-file "python-")))
(org-babel-comint-with-output
(session org-babel-python-eoe-indicator nil body)
(let ((comint-process-echoes nil))
(funcall input-body body)
(funcall dump-last-value tmp-file
(member "pp" result-params))
(funcall send-wait) (funcall send-wait)
(insert org-babel-python-eoe-indicator)
(funcall send-wait)))
(org-babel-eval-read-file tmp-file))
(unless (string= (substring org-babel-python-eoe-indicator 1 -1)
results)
(org-babel-result-cond result-params
results
(org-babel-python-table-or-string results)
8<8<8<8<
8<8<8<
This works, but I would be surprised if this hack meets org-mode's
standards. Nevertheless, maybe someone would find it useful.
What do you think? How can it be improved?
Best,
Dror
[O] Scope of properties as variables for babel blocks
#+title: Scope of properties as variables for babel blocks * Overview I have the following scenario in mind: =func1= and =func2= are two functions that can be executed in two modes: =foo= and =bar=. Each mode yields a different set of results, that have to be discussed, separately, in two different subtrees. The goal is to have one subtree where they are executed in one mode and a second subtree for the other mode. The functions are defined in a dedicated [[Code][subtree]]. * Bar setting Now, I want to execute the function in =bar= mode: #+PROPERTY: var mode="bar" #+CALL: func1() #+RESULTS: : default #+CALL: func2() #+RESULTS: : default * Foo setting In this node I want to execute the functions in =foo= mode: #+PROPERTY: var mode="foo" #+CALL: func1() #+RESULTS: : default #+CALL: func2() #+RESULTS: : default * Code #+name: func1 #+begin_src python return mode #+end_src #+RESULTS: func1 : foo #+name: func2 #+begin_src python return mode #+end_src #+RESULTS: func2 : default-val * Question: How can I implement this kind of workflow in a reproducible org mode document?
Re: [O] specifying the coding language resulting from a a :results code source block
Indeed, this seems to do the trick! Thanks! On Thu, Sep 11, 2014 at 8:19 PM, Ista Zahn wrote: > Can't you just do > > #+begin_src foo :wrap src bar >hello world > #+end_src > > ? > > Best, > Ista > > > On Thu, Sep 11, 2014 at 5:11 AM, Dror Atariah wrote: > > Is there some change in the status of this issue? Can one now specify the > > language of the result? > > > > Cheers, > > Dror > > > > -- > > Mahalo Tom, > > > > It looks like that's what I'll be doing for the ruby block. That said, > it > > would be great if the :results code argument would allow a language > > specification. > > > > Greg > > > > > > On Jun 27, 2012, at 10:22 AM, Thomas S. Dye wrote: > > > >> Greg Tucker-Kellogg writes: > >> > >>> I have a Ruby block that creates some dot code. I'd like to be able > >>> to have the #+RESULTS block enclosed > >>> in a src block that starts "#+BEGIN_SRC dot". Using :results value > >>> code generates the enclosing SRC block, > >>> but using the same language (Ruby) used to generate the code. Is > >>> there a way to specify the coding language > >>> of a generated #+RESULTS src block? > >>> > >>> Thanks, > >>> > >>> Greg > >>> > >> Aloha Greg, > >> > >> This works for me with an emacs-lisp code block named harris-matrix that > >> generates dot code. > >> > >> #+header: :var input=harris-matrix > >> #+header: :file temp.pdf > >> #+header: :cmdline -Tpdf > >> #+header: :results output > >> #+BEGIN_SRC dot > >> $input > >> #+END_SRC > >> > >> It's not quite what you were after, but it might help? > >> > >> All the best, > >> Tom > >> > >> -- > >> Thomas S. Dye > >> http://www.tsdye.com >
[O] [babel][table] Passing argument to Python code block using org-sbe
Consider the following code:
-8<--
#+NAME: test
#+BEGIN_SRC python :var x="foobar"
return len(x)
#+END_SRC
-8<--
It is possible to call this, as follows:
-8<--
#+CALL: test(x="fb")
-8<--
However, I fail to call this function and pass an argument to it when using
org-sbe:
-8<--
| 6 | #ERROR |
#+TBLFM: @1$1='(org-sbe test)::@1$2='(org-sbe test (x ("fb")))
-8<--
I tried several possibilities, but nothing worked. Is it at all possible?
Thanks in advance,
Dror
PS: I posted also a SE question: http://stackoverflow.com/q/25789183/671013
Re: [O] specifying the coding language resulting from a a :results code source block
Is there some change in the status of this issue? Can one now specify the language of the result? Cheers, Dror -- Mahalo Tom, It looks like that's what I'll be doing for the ruby block. That said, it would be great if the :results code argument would allow a language specification. Greg On Jun 27, 2012, at 10:22 AM, Thomas S. Dye wrote: > Greg Tucker-Kellogg writes: > >> I have a Ruby block that creates some dot code. I'd like to be able >> to have the #+RESULTS block enclosed >> in a src block that starts "#+BEGIN_SRC dot". Using :results value >> code generates the enclosing SRC block, >> but using the same language (Ruby) used to generate the code. Is >> there a way to specify the coding language >> of a generated #+RESULTS src block? >> >> Thanks, >> >> Greg >> > Aloha Greg, > > This works for me with an emacs-lisp code block named harris-matrix that > generates dot code. > > #+header: :var input=harris-matrix > #+header: :file temp.pdf > #+header: :cmdline -Tpdf > #+header: :results output > #+BEGIN_SRC dot > $input > #+END_SRC > > It's not quite what you were after, but it might help? > > All the best, > Tom > > -- > Thomas S. Dye > http://www.tsdye.com
[O] Unable to use org-sbe
I'm trying to use org-sbe but keep failing... I'm trying to use the example that can be found in the documentation of ob-table.el and the second column is filled with #ERROR. Here is the related output piped to *Messages*: Re-applying formulas to full table...(line 10) Re-applying formulas to 10 lines...done Re-applying formulas...done [2 times] I would be happy to provide further information, if only I'd know where to look for it. Org version: Org-mode version 8.2.7c (8.2.7c-61-g4b9146-elpaplus @ /my/path/.emacs.d/elpa/org-plus-contrib-20140908/) Thanks in advance, Dror
Re: [O] Google + org-mode agenda? can it be done?
It seems like the function "org-export-icalendar-combine-agenda-files" (as discussed in the first link provided by @Matt) has to be replace with "org-icalendar-combine-agenda-files" when working with a new version of org. Am I right? Cheers, Dror On Mar 5, 2014, at 22:50 PM, Matt Lundin wrote: > Sharon Kimble writes: > >> Can the google calendar work with org-mode agenda please? I haven't >> seen any indication that it can be done when I've been googling around. >> But I thought that I would ask anyway. > > Synchronization is not seamless, but it can be accomplished with some > setup. See: > > http://orgmode.org/worg/org-tutorials/org-google-sync.html > >> And on the same tack, can google tasks work with org-modes TODO lists >> please? > > This tool does bi-directional synchronization (org-files <-> google > tasks). Note: it synchronizes files, not the agenda's todo list. > > https://bitbucket.org/edgimar/michel-orgmode > > Matt
[O] [BUG] Problem with org-mobile.el
In the past (http://article.gmane.org/gmane.emacs.orgmode/79803/) I had a problem with pushing using org-mobile, and it was solved as detailed in (http://thread.gmane.org/gmane.emacs.orgmode/79856/focus=79876). Indeed now the patch can be found in ELPA, but it still introduces the same problem as reported above. My setting is: Emacs : GNU Emacs 24.3.1 (x86_64-apple-darwin, NS apple-appkit-1038.36) of 2013-03-13 on bob.porkrind.org Package: Org-mode version 8.2.4 (8.2.4-3-g7fe99a-elpa @ /Users/drorata/.emacs.d/elpa/org-plus-contrib-20140217/) Line #463 in org-mobile.el is: ((eq (car x) :grouptags) nil) which should be the fix. I could fix the issue by moving this line after the following one, have: ((eq (car x) :newline) nil) ((eq (car x) :grouptags) nil) for lines #463-464 instead of ((eq (car x) :grouptags) nil) ((eq (car x) :newline) nil) which is the current state. Can someone verify this? Best, Dror
Re: [O] Unable to push to org-mobile
I'm sorry I keep bugging with this... ;) On Dec 14, 2013, at 22:06 PM, Nick Dokos wrote: > Nick Dokos writes: > >> Dror Atariah writes: >> >>> 2. What's next? I believe this is a bug... How can I report it? >> >> Consider it reported - thanks for checking it. I'll push the proposed fix >> later >> on today. If it is wrong, we can revert it later, but at least for now >> it seems to fix the bug. >> > > I pushed the patch. I believe that the patch is wrong. The line "((eq (car x) :grouptags) nil)" is currently (as per the version of ELPA) #463, but it yields the same error as the one I reported initially. I moved it to line #464 (right after the one with ":newline") and it solved the issue. 1. Does it make sense? 2. If it does, then why? 3. Maybe you want to correct this? All the best and cheers, Dror
Re: [O] Unable to push to org-mobile
On Jan 12, 2014, at 14:26 PM, Bastien wrote: > Hi Dror, > > Dror Atariah writes: > >> So what's the point of the daily updates of the ELPA packages? > > To get bug fixed when you use ELPA. Wasn't the issue discussed originally in this thread a bug (and its fix)? Why it is not reflected in the ELPA? I just want to understand what's going on... No criticism or anything like that :) Best, Dror
Re: [O] Unable to push to org-mobile
On Jan 12, 2014, at 13:53 PM, Bastien wrote: > Dror Atariah writes: > >> Update: I have just updated from ELPA, and the patch is not >> there... I had to re-patch the missing line. > > The ELPA packages are built from the maint branch, from the > master branch, so patches in the master branch do not show up > there, that's why you had to re-patch this. So what's the point of the daily updates of the ELPA packages? Best, Dror
Re: [O] Unable to push to org-mobile
On Dec 15, 2013, at 15:17 PM, Nick Dokos wrote: > Dror Atariah writes: > >> On Dec 14, 2013, at 22:06 PM, Nick Dokos wrote: >> >>> Nick Dokos writes: >>> >>>> Dror Atariah writes: >>>> >>>>> 2. What's next? I believe this is a bug... How can I report it? >>>> >>>> Consider it reported - thanks for checking it. I'll push the proposed fix >>>> later >>>> on today. If it is wrong, we can revert it later, but at least for now >>>> it seems to fix the bug. >>>> >>> >>> I pushed the patch. >> >> Does it mean that I could update the installation through ELPA tomorrow and >> the patch will be there? >> > I don't think so - I pushed the patch to the master branch of the git > repo. But I'm not clear on what happens next, so somebody else will have > to answer your question. Update: I have just updated from ELPA, and the patch is not there... I had to re-patch the missing line. Best, Dror
Re: [O] Unable to push to org-mobile
On Dec 14, 2013, at 22:06 PM, Nick Dokos wrote: > Nick Dokos writes: > >> Dror Atariah writes: >> >>> 2. What's next? I believe this is a bug... How can I report it? >> >> Consider it reported - thanks for checking it. I'll push the proposed fix >> later >> on today. If it is wrong, we can revert it later, but at least for now >> it seems to fix the bug. >> > > I pushed the patch. Does it mean that I could update the installation through ELPA tomorrow and the patch will be there? Thanks for your help! Dror
Re: [O] Unable to push to org-mobile
On Dec 13, 2013, at 23:08 PM, Nick Dokos wrote:
> Dror Atariah writes:
>
>> Managed to get [backtrace] output...
>>
>> You can find it here: https://gist.github.com/drorata/7950857
>>
>> I could not find my way in this output... :(
>>
>
> If you look at the top of the backtrace it shows this:
>
> ,
> | Debugger entered--Lisp error: (wrong-type-argument sequencep :grouptags)
> | mapconcat(identity ("PRIVATE" "{" "WORK" :grouptags "WORK@mittagseminar"
> "WORK@open_questions" "WORK@diss" "WORK@CV" "}" "{" "IT" :grouptags
> "IT@emacs" "IT@git" "IT@TeX" "}" "{" "PROG" :grouptags "PROG@mathematica"
> "PROG@cgal" "}" "}" "4freeTime" "bms_friday" "emacs" "interesting_questions"
> "mittagseminar" "Mittagsseminar" "NOTE" "private" "results" "work" "Yvinec"
> "Ziegler") " ")
> | (insert "#+TAGS: " (mapconcat (quote identity) tags " ") "\n")
> | ...
> | org-mobile-create-index-file()
> `
>
> The mapconcat line can be evaluated on its own - it does not depend on
> anything else. If you cut and paste it into your *scratch* buffer and
> modify it slightly like this:
>
> --8<---cut here---start->8---
> (mapconcat 'identity '("PRIVATE" "{" "WORK" :grouptags "WORK@mittagseminar"
> "WORK@open_questions" "WORK@diss" "WORK@CV" "}" "{" "IT" :grouptags
> "IT@emacs" "IT@git" "IT@TeX" "}" "{" "PROG" :grouptags "PROG@mathematica"
> "PROG@cgal" "}" "}" "4freeTime" "bms_friday" "emacs" "interesting_questions"
> "mittagseminar" "Mittagsseminar" "NOTE" "private" "results" "work" "Yvinec"
> "Ziegler") " ")
> --8<---cut here---end--->8---
>
> and evaluate it with C-j, you get the exact error. Now look in
> org-mobile-create-index-file for the call
>
>
> (insert "#+TAGS: " (mapconcat 'identity tags " ") "\n")
>
> You'll find it on line 470 (at least in the version I'm using).
> Before this line there is this code:
>
> ...
> (setq def-tags (mapcar
> (lambda (x)
> (cond ((null x) nil)
> ((stringp x) x)
> ((eq (car x) :startgroup) "{")
> ((eq (car x) :endgroup) "}")
> ((eq (car x) :newline) nil)
> ((listp x) (car x
> def-tags))
> (setq def-tags (delq nil def-tags))
> (setq tags (org-delete-all def-tags tags))
> (setq tags (sort tags (lambda (a b) (string< (downcase a) (downcase b)
> (setq tags (append def-tags tags nil))
> (insert "#+TAGS: " (mapconcat 'identity tags " ") "\n")
> ...
>
> You'll notice that :startgroup is replaced by { , :endgroup is
> replaced by } and :newline is deleted - but there is no mention of
> :grouptags which leads me to suspect that there should be an extra
> line in there, perhaps
>
> ((eq (car x) :grouptags) nil)
>
> Maybe you can try it - better yet, maybe somebody who has some idea of
> how org-mobile works should take a look. I note that if I delete the
> :grouptags instances in the mapconcat call above, it completes without
> error.
Bingo! Adding this line allowed me to complete org-mobile-push successfully!
Amazing. I have three closing questions:
1. What made you look into lines #460-464? Now when you pointed, it is somehow
straightforward to check line #470, but there seems to be no indication
regarding the broken code.
2. What's next? I believe this is a bug... How can I report it?
3. Finally, in the meanwhile, till the bug-fix is out, what is the best
practice to maintain this patch locally?
Thanks a lot for your hand It was great having it!
Dror
>
> Nick
Re: [O] Unable to push to org-mobile
On Dec 13, 2013, at 20:51 PM, Nick Dokos wrote:
> Dror Atariah writes:
>
>> On Dec 13, 2013, at 16:08 PM, Nick Dokos wrote:
>>
>>> Dror Atariah writes:
>>>
>>>> Today I realized that I cannot execute successfully 'org-mobile-push'. In
>>>> particular here is the output from '*Messages*':
>>>>
>>>> Creating agendas...
>>>> Agenda written to Org file /Users/drorata/Dropbox/MobileOrg/agendas.org
>>>> Creating agendas...done
>>>> Saving all Org-mode buffers...
>>>> (No files need saving)
>>>> Saving all Org-mode buffers... done
>>>> Copying files...
>>>> Writing index file...
>>>> org-mobile-create-index-file: Wrong type argument: sequencep, :grouptags
>>>>
>>>> I first step I took was to update the package; now 'org-version' yields
>>>> "Org-mode version 8.2.4 (8.2.4-3-g7fe99a-elpa @
>>>> /Users/user/.emacs.d/elpa/org-plus-contrib-20131209/)". However,
>>>> problem is still
>>>> here.
>>>>
>>>> Next I don't really know what to do... I have all my emacs' settings in
>>>> https://github.com/drorata/emacs_setup
>>>>
>>>> How can I debug this problem and solve it?
>>>
>>> In the same way that you debug all such problems: toggle debug-on-error,
>>> try to do org-mobile-push again and look at the resulting backtrace (or
>>> post it so others can look at it).
>> I evaluated (setq debug-on-error t), and then executed org-mobile-push
>> again. There was no output in the *Backtrace* buffer
>>
>
> Try deleting the org-mobile.elc file and reloading org-mobile.el. Then
> try evaluating
>
> (let ((debug-on-error t))
> (org-mobile-push))
>
> and see if that gives you a backtrace.
Managed to get output...
You can find it here: https://gist.github.com/drorata/7950857
I could not find my way in this output... :(
>>> A shot in the dark: what's the value of org-tag-alist?
>> The value of org-tag-alist is:
>>
>> (("PRIVATE" . 112)
>> (:startgroup)
>> ("WORK" . 119)
>> (:grouptags)
>> ("WORK@mittagseminar" . 109)
>> ("WORK@open_questions" . 105)
>> ("WORK@diss" . 100)
>> ("WORK@CV")
>> (:endgroup \.nil)
> ^
> This looks strange to me, although it's not clear it would cause the
> problem even if it is wrong (which it may or may not be).
Indeed strange, and probably a typo. There was a missing space. I corrected
this before taking the measures you mentioned above.
>
> Nick
>
Best,
Dror
Re: [O] Unable to push to org-mobile
On Dec 13, 2013, at 16:08 PM, Nick Dokos wrote:
> Dror Atariah writes:
>
>> Today I realized that I cannot execute successfully 'org-mobile-push'. In
>> particular here is the output from '*Messages*':
>>
>> Creating agendas...
>> Agenda written to Org file /Users/drorata/Dropbox/MobileOrg/agendas.org
>> Creating agendas...done
>> Saving all Org-mode buffers...
>> (No files need saving)
>> Saving all Org-mode buffers... done
>> Copying files...
>> Writing index file...
>> org-mobile-create-index-file: Wrong type argument: sequencep, :grouptags
>>
>> I first step I took was to update the package; now 'org-version' yields
>> "Org-mode version 8.2.4 (8.2.4-3-g7fe99a-elpa @
>> /Users/user/.emacs.d/elpa/org-plus-contrib-20131209/)". However, problem is
>> still
>> here.
>>
>> Next I don't really know what to do... I have all my emacs' settings in
>> https://github.com/drorata/emacs_setup
>>
>> How can I debug this problem and solve it?
>
> In the same way that you debug all such problems: toggle debug-on-error,
> try to do org-mobile-push again and look at the resulting backtrace (or
> post it so others can look at it).
I evaluated (setq debug-on-error t), and then executed org-mobile-push again.
There was no output in the *Backtrace* buffer
> A shot in the dark: what's the value of org-tag-alist?
The value of org-tag-alist is:
(("PRIVATE" . 112)
(:startgroup)
("WORK" . 119)
(:grouptags)
("WORK@mittagseminar" . 109)
("WORK@open_questions" . 105)
("WORK@diss" . 100)
("WORK@CV")
(:endgroup \.nil)
(:startgroup)
("IT" . 73)
(:grouptags)
("IT@emacs")
("IT@git")
("IT@TeX")
(:endgroup)
(:startgroup)
("PROG" . 112)
(:grouptags)
("PROG@mathematica")
("PROG@cgal")
(:endgroup)
(:endgroup)
("4freeTime" . 52))
What should be the next step?
Thanks in advance!
Dror
[O] Unable to push to org-mobile
Today I realized that I cannot execute successfully 'org-mobile-push'. In particular here is the output from '*Messages*': Creating agendas... Agenda written to Org file /Users/drorata/Dropbox/MobileOrg/agendas.org Creating agendas...done Saving all Org-mode buffers... (No files need saving) Saving all Org-mode buffers... done Copying files... Writing index file... org-mobile-create-index-file: Wrong type argument: sequencep, :grouptags I first step I took was to update the package; now 'org-version' yields "Org-mode version 8.2.4 (8.2.4-3-g7fe99a-elpa @ /Users/user/.emacs.d/elpa/org-plus-contrib-20131209/)". However, problem is still here. Next I don't really know what to do... I have all my emacs' settings in https://github.com/drorata/emacs_setup How can I debug this problem and solve it?
[O] Line breaks in org-mode having version control in mind
I am trying to extend my usage of org, and one of the things I want to integrate is version controlling of my org files. This is obviously straight forward, but I am wondering about the best line breaking approach to use. In my LaTeX docs I maintain one physical line per sentence [1]. This way, when I change one word in a paragraph, it affects only one line, and looking for differences between versions is easy. Otherwise, when using fill-paragraph for instance, one gets messy changes of the file, as the one word change can influence the whole paragraph. Therefore, as I mentioned, in LaTeX I use visual-line-mode and I insert manually line breaks at the end of sentences (or where *I* find appropriate). What would be the best practice for org? I understand that visual-line-mode has some problems when it comes to tables... What other issues are there? What do you do when you keep your org file under VC? Thanks in advance, Dror [1] http://tex.stackexchange.com/a/4378/412
Re: [O] Markup (blod for instance) over line breaks
On Oct 14, 2013, at 07:11 AM, Eric Abrahamsen wrote: > Dror Atariah writes: > >> Dear org-moders, >> >> It might be terribly simple, but I failed to find a solution. How can >> I mark several words as bold (or emphasized or any similar markup), >> in particular if the words spans over *more then one line*? >> >> A similar problem can occur when one is pasting a long line into an >> org-mode buffer and then, after it is being broken into shorter >> lines, you try to make it bold. >> >> The documentation (http://orgmode.org/org.html#Emphasis-and-monospace >> ) states that this kind of markup is aimed at words - so it might not >> support sentences and in particula r long ones... Is it correct? >> >> Thanks in advance, >> Dror > > I use autofill mode, and then change the value of > `org-emphasis-regexp-components'. That variable is a list, the fifth > element of which says how many newlines the emphasis markers will allow. > I set it to three: > > (setf (nth 4 org-emphasis-regexp-components) 3) Thanks for the tip. It somehow didn't help. I did "M-x org-reload" after setting this, but it didn't help spanning the italic in my case over several lines. Cheers, Dror
Re: [O] Markup (blod for instance) over line breaks
On Oct 13, 2013, at 22:22 PM, Marcin Borkowski wrote: > Dnia 2013-10-13, o godz. 21:58:20 > Dror Atariah napisał(a): > >> >> On Oct 13, 2013, at 21:38 PM, Marcin Borkowski wrote: >> >>> Dnia 2013-10-13, o godz. 20:49:30 >>> Dror Atariah napisał(a): >>> >>>> Dear org-moders, >>>> >>>> It might be terribly simple, but I failed to find a solution. How >>>> can I mark several words as bold (or emphasized or any similar >>>> markup), in particular if the words spans over *more then one >>>> line*? >>>> >>>> A similar problem can occur when one is pasting a long line into an >>>> org-mode buffer and then, after it is being broken into shorter >>>> lines, you try to make it bold. >>>> >>>> The documentation >>>> (http://orgmode.org/org.html#Emphasis-and-monospace) states that >>>> this kind of markup is aimed at words - so it might not support >>>> sentences and in particular long ones... Is it correct? >>> >>> Not really an answer, but does visual-line-mode help in your use >>> case? >> It does help. Doesn't org-mode has some sort of dedicated >> line-breaking mechanism? How would you turn it into a complete >> solution? > > Not that I know of. Basically, "lines" may be /visual/ (i.e., broken by > the display engine at spaces etc., but the whole paragraph is one long > line in the file) or /physical/ (i.e., with newline characters at the > end of each line). In Emacs, you an use M-q to "fill" a paragraph > (more or less, convert from visual to physical lines), and something > along the lines of C-u 9 9 9 9 9 C-x f M-q to "unfill" a paragraph. > (There are also "unfill" functions (quod google), though they are not > part of stock Emacs.) > > There is an ongoing discussion on which is better, too long to repeat > any of the arguments here. For a LaTeX-centric approach, see e.g. > http://tex.stackexchange.com/questions/4376/good-strategy-for-line-breaks-with-paragraphs-of-latex-source > (note that Emacs's longline-mode was a predecessor of visual-line-mode). In this case I suppose I will revert to visual-line-mode, just like I have in my LaTeX buffers. > And indeed, bold/italic spanning more than a few words might not be a > good idea. And in cases it is, it's problably better to define a > specialized "environment" (in LaTeX lingo) - like one for theorems > (which are often typeset in italics). What is the org-mode's equivalent of LaTeX's environment? That COULD be very helpful. Thanks, Dror
Re: [O] Markup (blod for instance) over line breaks
On Oct 13, 2013, at 21:38 PM, Marcin Borkowski wrote: > Dnia 2013-10-13, o godz. 20:49:30 > Dror Atariah napisał(a): > >> Dear org-moders, >> >> It might be terribly simple, but I failed to find a solution. How can >> I mark several words as bold (or emphasized or any similar markup), >> in particular if the words spans over *more then one line*? >> >> A similar problem can occur when one is pasting a long line into an >> org-mode buffer and then, after it is being broken into shorter >> lines, you try to make it bold. >> >> The documentation >> (http://orgmode.org/org.html#Emphasis-and-monospace) states that this >> kind of markup is aimed at words - so it might not support sentences >> and in particular long ones... Is it correct? > > Not really an answer, but does visual-line-mode help in your use case? It does help. Doesn't org-mode has some sort of dedicated line-breaking mechanism? How would you turn it into a complete solution? Best, Dror
[O] Markup (blod for instance) over line breaks
Dear org-moders, It might be terribly simple, but I failed to find a solution. How can I mark several words as bold (or emphasized or any similar markup), in particular if the words spans over *more then one line*? A similar problem can occur when one is pasting a long line into an org-mode buffer and then, after it is being broken into shorter lines, you try to make it bold. The documentation (http://orgmode.org/org.html#Emphasis-and-monospace) states that this kind of markup is aimed at words - so it might not support sentences and in particular long ones... Is it correct? Thanks in advance, Dror
Re: [O] Unable to finalize capture
On Oct 4, 2013, at 23:04 PM, Nick Dokos wrote: > Dror Atariah writes: > >>> M-x locate-library RET org RET >> Returns: >> Library is file ~/.emacs.d/elpa/org-plus-contrib-20130930/org.elc > > N.B. Never used elpa, so take with appropriately sized grain of salt. > > Not sure whether this is a problem, but why is org.elc in the main > directory and not under > > ~/.emacs.d/elpa/org-plus-contrib-20130930/org/lisp? > > Maybe you are using a left-over org.elc? Probably, this is somehow the case... I think the directory structure that you can see is the default one of ELPA - I don't think I tweaked it. >>> and >>> >>> M-x list-load-path-shadows RET >> Returns (I hope I collected only the relevant entries): >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides >> /Users/user_name/.emacs.d/elpa/org-20130930/org >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides >> /Users/user_name/.emacs.d/elpa/org-20130812/org >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides >> /Users/user_name/.emacs.d/elpa/org-20130923/org >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130812/org >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130923/org >> /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides >> /Applications/Emacs.app/Contents/Resources/lisp/org/org >> >> I guess that the above output suggests that org-mode is properly installed >> (via ELPA), isn't it? I'm afraid that I am not hinted by this output. >> > > Check that your org.el does include the definition of the variable. > Then load the uncompiled version using an explicit path: The file "~/.emacs.d/elpa/org-plus-contrib-20130930/org.el" contains the definition of the variable "org-bookmark-names-plist" > M-x load-file RET /Users/user_name/.emacsd./elpa//org/lisp/org.el RET > > *Now* is the variable defined? If so, does capture work? Indeed, loading it manually, solved the problem. > I'd probably clean up the .elc files and compile anew. Then restart > emacs. I didn't know how to recompile the files, and what exactly do you mean by cleaning the .elc's; so I did something else. I removed the old directories of org-mode from the ELPA directory, restarted emacs and it now seems to work fine. Thanks and all the best, Dror
Re: [O] Unable to finalize capture
On Oct 4, 2013, at 14:56 PM, Nick Dokos wrote: > Dror Atariah writes: > >> It seems like after the last update I've made to org-mode the >> capturing of notes does not work properly. Currently I have version >> 8.0.7 (20130930) from the ELPA. Hitting C-c c (i.e. org-capture) >> brings the list of capture templates and then I can choose one of them >> to open a buffer where I can actually entry the note. The problem is >> that once I'm done, hitting C-c C-c doesn't close the capturing >> buffer. The content is saved in the right place but I'm not returned >> to the place where I started the capturing. In the *Messages* buffer I >> get the following error: org-capture-finalize: Symbol's value as >> variable is void: org-bookmark-names-plist >> > > org-bookmark-names-plist is defined in org.el. Try evaluating > > (require 'org) This evaluation can be found in my init file. I can evaluate this manually without any problem. > and seeing if the variable is now defined: > > C-h v org-bookmark-names-plist RET The variable is not defined. Thus, I guess I'm facing the following case in your answer: > If the variable is not defined, check whether you have some old > obsolete org.el lying around: > > M-x locate-library RET org RET Returns: Library is file ~/.emacs.d/elpa/org-plus-contrib-20130930/org.elc > and > > M-x list-load-path-shadows RET Returns (I hope I collected only the relevant entries): /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides /Users/user_name/.emacs.d/elpa/org-20130930/org /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides /Users/user_name/.emacs.d/elpa/org-20130812/org /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides /Users/user_name/.emacs.d/elpa/org-20130923/org /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130812/org /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130923/org /Users/user_name/.emacs.d/elpa/org-plus-contrib-20130930/org hides /Applications/Emacs.app/Contents/Resources/lisp/org/org I guess that the above output suggests that org-mode is properly installed (via ELPA), isn't it? I'm afraid that I am not hinted by this output. What further steps can I take?
[O] Unable to finalize a capture
It seems like after the last update I've made to org-mode the capturing of
notes does not work properly. Currently I have version 8.0.7 (20130930) from
the ELPA.
Hitting `C-c c` (i.e. org-capture) brings the list of capture templates and
then I can choose one of them to open a buffer where I can actually entry the
note. The problem is that once I'm done, hitting `C-c C-c` doesn't close the
capturing buffer. The content is saved in the right place but I'm not returned
to the place where I started the capturing. In the *Messages* buffer I get the
following error:
"org-capture-finalize: Symbol's value as variable is void:
org-bookmark-names-plist"
I don't really know where to start debugging this problem. Any ideas?
I believe the following are all the related setting that I have:
;; Capture-org
(setq org-default-notes-file (concat org-directory "/notes.org"))
(define-key global-map "\C-cc" 'org-capture)
(setq org-capture-templates
(quote (("t" "todo" entry (file (concat org-directory "/gtd.org"))
"* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
("n" "note" entry (file (concat org-directory "/gtd.org"))
"* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
("j" "Journal" entry (file+datetree (concat org-directory
"/diary.org"))
"* %?\n%U\n" :clock-in t :clock-resume t)
("v" "Vocabulary" entry
(file+headline (concat org-directory "/vocab.org")
"Vocabulary")
"* %^{The word} :drill:\n:PROPERTIES:\n:Part-of-speech: %^{Part
of speech|verb|noun|adj|adv}\n:END:\n %t\n %^{Extended word (may be empty)}
\n** Answer \n%^{The definition}")
)))
[O] Unable to finalize capture
It seems like after the last update I've made to org-mode the capturing of
notes does not work properly. Currently I have version 8.0.7 (20130930) from
the ELPA. Hitting C-c c (i.e. org-capture) brings the list of capture templates
and then I can choose one of them to open a buffer where I can actually entry
the note. The problem is that once I'm done, hitting C-c C-c doesn't close the
capturing buffer. The content is saved in the right place but I'm not returned
to the place where I started the capturing. In the *Messages* buffer I get the
following error: org-capture-finalize: Symbol's value as variable is void:
org-bookmark-names-plist
I don't really know where to start debugging this problem. Any ideas?
I believe the following are all the related setting that I have:
;; Capture-org
(setq org-default-notes-file (concat org-directory "/notes.org"))
(define-key global-map "\C-cc" 'org-capture)
(setq org-capture-templates
(quote (("t" "todo" entry (file (concat org-directory "/gtd.org"))
"* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
("n" "note" entry (file (concat org-directory "/gtd.org"))
"* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
("j" "Journal" entry (file+datetree (concat org-directory
"/diary.org"))
"* %?\n%U\n" :clock-in t :clock-resume t)
("v" "Vocabulary" entry
(file+headline (concat org-directory "/vocab.org")
"Vocabulary")
"* %^{The word} :drill:\n:PROPERTIES:\n:Part-of-speech: %^{Part
of speech|verb|noun|adj|adv}\n:END:\n %t\n %^{Extended word (may be empty)}
\n** Answer \n%^{The definition}")
)))
Re: [O] Changing packages and their order in LaTeX export
>> I need to include 'amsmath' package in my LaTeX export. Using
>> #+LATEX_HEADER: \usepackage{xyz} adds it at the end of the list, and
>> then there are LaTeX related problems.
>> I tried to find where the default list is defined - it seems like it
>> is in org.el. However, I have several copies of this file, and I don't
>> know which one is the right one to change.
>
> Does M-x customize-group RET org-export-latex RET show something that
> could be of interest to you.
This worked for me! Where did you find it in the manual? I looked there.
Sometimes the manual's instructions are too cryptic for me - in the sense that
I find the variable name, but I don't know how to change it.
>
> As a user, in principle, you should refuse to look at elisp files. But
> it's a very good idea to look at the manuals though.
Thanks for the tip!
>> 2. If it is the org.el, then how can I tell which file is the one
>> which is used? Should I restart emacs after each edit of this file for
>> the changes to take effect?
Can you still answer this question? How can I ask emacs to tell me where is the
file it is using and should I restart after each such change?
Thanks,
Dror
[O] Changing packages and their order in LaTeX export
I need to include 'amsmath' package in my LaTeX export. Using #+LATEX_HEADER:
\usepackage{xyz} adds it at the end of the list, and then there are LaTeX
related problems.
I tried to find where the default list is defined - it seems like it is in
org.el. However, I have several copies of this file, and I don't know which one
is the right one to change.
So, two questions:
1. Should I change the org.el or is it somewhere else?
2. If it is the org.el, then how can I tell which file is the one which is
used? Should I restart emacs after each edit of this file for the changes to
take effect?
Thanks!
Dror Atariah
Re: [O] Changing the font family in HTML export
On Jun 28, 2011, at 14:10 PM, Christian Moe wrote:
> Hi,
>
> The tips you have received from others about customizing various variables
> are likely to be what you want (will work for all your documents). But for
> completeness' sake: to change things on a file-by-file basis, you can do it
> Manuel's way, but without an external stylesheet, like this:
>
> #+STYLE:html { font-family: Helvetica, sans-serif; font-size: 12pt;
> }
>
> Your custom CSS is included in the HEAD of the generated document, after the
> default CSS, which it overrides.
This was most helpful actually! Thanks!
>
> Yours,
> Christian
>
> On 6/28/11 11:00 AM, Dror Atariah wrote:
>> This solved the problem. However, as you pointed out, in case I want to
>> publish/share this generated html, I have to send as well another file, and
>> it is not longer self contained. In the automatically, generated html, there
>> is a section at the beginning:
>> --==--
>>
Re: [O] Changing the font family in HTML export
This solved the problem. However, as you pointed out, in case I want to publish/share this generated html, I have to send as well another file, and it is not longer self contained. In the automatically, generated html, there is a section at the beginning: --==--
[O] Changing the font family in HTML export
Dear org mode users, I'm trying to change the font used when exporting .org to .html. At the moment, I get "
[O] Re: Update org-mode
Let me summarize the steps I carried out eventually, to use the package manager. Note, I am using emacs 23 based editor which was shipped with org-mode 6.33. * Updating Follow the steps: ** Intsall the package manager *** Download the =packages.el= file from http://repo.or.cz/w/emacs.git/blob_plain/1a0a666f941c99882093d7bd08ced15033bc3f0c:/lisp/emacs-lisp/package.el. Save in in =~/Library/elisp= for example. *** Add the following code to the =.emacs=: #+BEGIN_SRC elisp (setq load-path (cons "~/Library/elisp" load-path)) (require 'package) (package-initialize) #+END_SRC *** Verify To verify this part, in /emacs/ hit =M-x list-packages RET org=. Here you should see a list of optional packages. /Note:/ you may ignore the warning: =failed to download org-mode archive=. ** Updating org-mode *** Enter the =list-packages= Hit =M-x list-packages RET=. In there mark for installation by =i= the org package and the =x= for the actual installation. *** Restart emacs *** Verify Hit =M-x locate-library RET org= to verify the installation. You should now have org-mode up and running. Thank you all! Dror On Apr 1, 2011, at 18:24 PM, Jambunathan K wrote: > Dror Atariah writes: > >> I tried to follow the update process described here: >> http://orgmode.org/worg/org-faq.html under: >> How do I keep current with bleeding edge development? > > Search for ELPA in FAQ. Maybe that will work well for you ... >
Re: [O] Update org-mode
On Apr 3, 2011, at 11:55 AM, Christian Moe wrote: > On 4/3/11 10:08 AM, Dror Atariah wrote: >> # Where local software is found >> #prefix=/usr/local >> prefix=~/Applications > > Hi, > > Try > > prefix=/Applications > > without the tilde. That made the trick! I'll try to follow and solve also the package-manager path. THANKS!!!
[O] Re: Update org-mode
It seems like I have to install the package manager. I followed the instructions in the org-mode FAQ. Added: (setq load-path (cons "~/Library/elisp" load-path)) (require 'package) (package-initialize) To my .emacs, where packages.el located in ~/Library/elisp. Then, when I restart Aquamacs I get the following error: Warning (initialization): An error occurred while loading `/Users/drorata/.emacs': Symbol's value as variable is void: package-subdirectory-regexp To ensure normal operation, you should investigate and remove the cause of the error in your initialization file. Start Emacs with the `--debug-init' option to view a complete error backtrace. What should I do? Thanks for your time!! Dror On Apr 3, 2011, at 10:58 AM, Jambunathan K wrote: > Dror Atariah writes: > >> Good morning Jambunathan, >> >> I did consider this, however, I couldn't make this work for me >> either. I think I'm running a too old version of Emacs/Aquamacs. If >> you could help me set this up that would be great!! > >> I am using Emacs 23.3.1 (i386-apple-darwin9.8.0, NS >> apple-appkit-949.54) of 2011-03-19 on braeburn.aquamacs.org - Aquamacs >> Distribution 2.2 on a mac OS 10.6.7. > > I don't use Mac. But on my windows machine, I have installed > ELPA/Orgmode on emacs-23.3. > > Follow instructions in > http://orgmode.org/worg/org-faq.html#installing-via-elpa > > You have to install package manager first and then install new org-mode. > > I don't know where exactly failure heppaned. Tell me which step > failed. I would be able to help better. > > Did Orgmode show up when you did M-x list-packages? > > Jambunathan K. > Dror Atariah --- Landline:+49-30-43024501 Mobile: +49-176-67116376 Mobile (in IL): +972 54 5912389 IM: dror...@gmail.com dror...@hotmail.com
Re: [O] Re: Update org-mode
I have added the following: >>> (setq load-path (cons >>>(expand-file-name "~/Library/elisp") >>>load-path)) >>> (require 'org-install) No change in the way Aquamacs+org-mode behaves. In particular version still shows 6.33x... :(
Re: [O] Update org-mode
@Christian: Here's my updated Makefile (at least the first part): # Name of your emacs binary EMACS=/Applications/Aquamacs.app/Contents/MacOS/Aquamacs # Where local software is found #prefix=/usr/local prefix=~/Applications # Where local lisp files go. lispdir = $(prefix)/Aquamacs.app/Contents/Resources/lisp # Where info files go. infodir = $(prefix)/Aquamacs.app/Contents/Resources/info Running the "make install" finally (after make && make doc) yielded a rather long process with lots of output. However, when I reopened Aquamacs and and .org file, the version checked still showed 6.33x Anything I should do otherwise? Thnx! On Apr 2, 2011, at 22:13 PM, Christian Moe wrote: > In the Makefile, what settings do you have under these headings? > > # Name of your emacs binary > # Where local software is found > # Where local lisp files go. > # Where info files go. > > I'm one of the oddballs who compile and install every new Org version, > because in the start I thought that was the "right" way, and it's become a > habit. > > The Makefile needs to point to the right paths for your Aquamacs application > and its site-lisp and info subdirectories. I don't use Aquamacs, but mutatis > mutandis it's probably similar to that for GNU Emacs on the Mac, namely: > > # Name of your emacs binary > EMACS=/Applications/Emacs.app/Contents/MacOS/emacs > > # Where local software is found > prefix=/Applications > > # Where local lisp files go. > lispdir = $(prefix)/Emacs.app/Contents/Resources/site-lisp > > # Where info files go. > infodir = $(prefix)/Emacs.app/Contents/Resources/info > > I quickly found that git pulls would overwrite my hand-edited Makefile, and a > hand-edited Makefile caused conflicts on the next pull, and I didn't > understand git at all. > > So I did a shell script that pulls org-mode, copies the Makefile, applies a > patch with the above changes to the Makefile, compiles and installs, and then > switches back the Makefile copy. Works for me. > > Yours, > Christian > > > > On 4/1/11 5:20 PM, Dror Atariah wrote: >> I tried to follow the update process described here: >> http://orgmode.org/worg/org-faq.html under: >> How do I keep current with bleeding edge development? >> >> The only change I made was the place where I checked out the new version. >> Instead of ~/elisp I have ~/Library/elisp. >> >> Everything went smooth, except that I had to add "sudo" before the "make >> install". Without the sudo, I got an "access denied" error. Anyway, at the >> end, I got no warnings and it seems like the process was smooth. But when I >> checked the version of org-mode in aquamacs it was still 6.33x >> >> I am using Emacs 23.3.1 (i386-apple-darwin9.8.0, NS apple-appkit-949.54) >> of 2011-03-19 on braeburn.aquamacs.org - Aquamacs Distribution 2.2 on a mac >> OS 10.6.7. >> >> What should I do in order to fix it? >> >> Thanks in advance, >> Dror >> >> >> >> >> > Dror Atariah --- Landline:+49-30-43024501 Mobile: +49-176-67116376 Mobile (in IL): +972 54 5912389 IM: dror...@gmail.com dror...@hotmail.com
[O] Re: Update org-mode
> #+begin_src elisp > (setq load-path (cons > (expand-file-name "~/Library/elisp") > load-path)) > (require 'org-install) > #+end_src > @Yagnesh: where should I plug this code into?
[O] Update org-mode
I tried to follow the update process described here: http://orgmode.org/worg/org-faq.html under: How do I keep current with bleeding edge development? The only change I made was the place where I checked out the new version. Instead of ~/elisp I have ~/Library/elisp. Everything went smooth, except that I had to add "sudo" before the "make install". Without the sudo, I got an "access denied" error. Anyway, at the end, I got no warnings and it seems like the process was smooth. But when I checked the version of org-mode in aquamacs it was still 6.33x I am using Emacs 23.3.1 (i386-apple-darwin9.8.0, NS apple-appkit-949.54) of 2011-03-19 on braeburn.aquamacs.org - Aquamacs Distribution 2.2 on a mac OS 10.6.7. What should I do in order to fix it? Thanks in advance, Dror
Re: [Orgmode] Re: Using latexmk for LaTeX compilation
> This setting works for me to produce pdfs via latexmk. > > (setq org-latex-to-pdf-process (list "latexmk -f -pdf %f")) > This almost solved my problem - after changing %f to %s it worked as expected. Thnx! ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Using latexmk for LaTeX compilation
I want to use latexmk as the LaTeX exporting engine, I following this link's (http://orgmode.org/worg/org-faq.html#using-xelatex-for-pdf-export) instruction, but it didn't work. Note, that exporting the .org to .tex file and then manually running latexmk -pdf works flawlessly. I'm very new to emacs and I can't find what is wrong here. I also posted a question here http://tex.stackexchange.com/questions/10562/emacs-org-mode-and-latexmk. You can find some more details there. Thanks a lot! Dror ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
