Re: Please help by becoming a maintainer for an Org Babel file

-- Tyler Smith plantarum.ca

org-export-latex-packages-alist vs org-latex-packages-alist

. Best, Tyler -- Tyler Smith plantarum.ca

running code with sessions on remote computers

g this out - is it an orgmode problem, a tramp problem, or an ESS problem? Thanks! Tyler -- Tyler Smith plantarum.ca

Re: default units for graphics in R code blocks

h as you can't find certain header args in the org docs; you > have to kind of know what you're looking for, or at least that the > header arg is *only* for, say, R, and not for anything else. > > Anyway, thanks for contributing! > > Best, > John > > On Mon, Mar 30,

Re: default units for graphics in R code blocks

any edits/corrections you make! > > Best regards, > John > >> >> Best, >> >> Tyler >> >> >> >> -- >> Tyler Smith >> http://plantarum.ca >> -- Tyler Smith http://plantarum.ca

default units for graphics in R code blocks

-- Tyler Smith http://plantarum.ca

Re: Bug: R src blocks fail to produce link to graphics file [9.3 org-plus-contrib-20200127]

You're welcome! I think the examples could use refreshing/restructuring, but I'm not sure when I'll have time to get to that. Best, Tyler -- plantarum.ca On Mon, Feb 17, 2020, at 12:40 PM, Jack Kamm wrote: > Hi Tyler, > > >> The documentation for ob-R is now incorrect: > >> > >>

what happened to org-man?

Hi, What happend to org-man? I think the file was deleted from org mode, but I don't see any explanation in the news file. I think this qualifies as an incompatible change, at least for those of us that used org-man? Best, Tyler -- Tyler Smith http://plantarum.ca

can't sign in to code.orgmode.org

Hello, I am trying to set up an account with code.orgmode.org. I have already done this, but when I try to sign in, I get an error about incorrect username or password. I have clicked the link to send a password reset several times this morning, but no email has shown up in my account, or in

Re: Bug: R src blocks fail to produce link to graphics file [9.3 org-plus-contrib-20200127]

On Mon, Jan 27, 2020, at 12:29 PM, Jack Kamm wrote: > > It should now be ":results graphics file". This behavior changed in Org > 9.3, see https://orgmode.org/Changes.html (:file header argument no > longer assume "file" :results). > That fixes it, thanks! The documentation for ob-R is now

Re: Bug: R src blocks fail to produce link to graphics file [9.3 org-plus-contrib-20200127]

But could you try with the option > > :results output graphics :file test.pdf > > HTH, > Jeremie > > > On January 27, 2020 5:13:20 PM GMT+01:00, Tyler Smith > wrote: >> To reproduce: >> >> 1. Start from `emacs -Q` >> >> 2. open the fol

Bug: R src blocks fail to produce link to graphics file [9.3 org-plus-contrib-20200127]

To reproduce: 1. Start from `emacs -Q` 2. open the following org file: ``` #+BEGIN_SRC elisp setup (require 'package) (setq package-load-list '((org-plus-contrib t) (ess t) (julia-mode t))) (package-initialize) (require 'org) (require 'ess) (org-babel-do-load-languages

Re: [O] default value for org-capture-templates

On Sat, Dec 29, 2018, at 8:41 AM, Nicolas Goaziou wrote: > "Tyler Smith" writes: > > > I can put together a patch to do this if I haven't overlooked > > a problem this would create. > > I think you can go ahead. Thank you. > > Have you signed FSF pape

[O] default value for org-capture-templates

Hi, A question came up on StackOverflow asking about how to use the default capture template (`Task`) in combination with user-defined templates: https://emacs.stackexchange.com/questions/46794/where-is-default-org-mode-capture-template-for-tasks-located The default Task template is actually

Re: [O] R output with session polluted with ascii color codes

On Fri, Mar 16, 2018, at 2:55 PM, William Denton wrote: > On 16 March 2018, Tyler Smith wrote: > > Anyway, I tried again, and there was still no problem in Emacs. That made me > wonder if the difference was in R. When I run "as_tibble(iris)" in the R > console

Re: [O] R output with session polluted with ascii color codes

On Fri, Mar 16, 2018, at 11:25 AM, William Denton wrote: > > I tried the example in my configured setup and didn't get the ASCII codes. I > don't know why and didn't dig into it, but I could; for now I figured I'd > just > mention this. > Thanks for checking. I should have mentioned that

[O] R output with session polluted with ascii color codes

Hi, The printed output of some R functions includes ascii color codes (i.e., ). This causes problems with R code blocks evaluated with the :session option. I've pasted a file below that demonstrates the problem. (should I attach it as a file? not sure what's preferable). I can't find

Re: [O] org alters output of bash code blocks when run with :session

On Mon, Feb 26, 2018, at 6:27 AM, Nicolas Goaziou wrote: > Tyler Smith <ty...@plantarum.ca> writes: > > > > How do I force the babel session to leave the output alone, and print > > it verbatim into the org file? > > It may be related to other problems related t

[O] org alters output of bash code blocks when run with :session

Hi, (originally posted to emacs.stackexchange[1] with no answers, ) I am running a short bash command from an org mode code block, using the program `fold` to wrap it at 60 characters. If I run the code without a session argument, the results display as expected. However, when I set the

[O] org-clock-report overrides default :scope argument

Hi, I have set org-clock-clocktable-default-properties to: (:scope agenda :stepskip0 t :fileskip0 t :compact t :block today) However, if I'm in a subtree and I try to insert a new clock table via ~C-c C-x C-r~ / ~org-clock-report~, org sets the options to ~:scope subtree~, ignoring my

Re: [O] Insert timestamp other than DEADLINE: or SCHEDULED: for heading

Ok, thanks for the info. On Tue, Feb 6, 2018, at 8:55 PM, Samuel Wales wrote: > regular tses can be anywhere. there is no command to put it after the > maiin org thingies. there was discussion a while back about adding > EVENT: but it has not been implemented yet. >

[O] Insert timestamp other than DEADLINE: or SCHEDULED: for heading

Hi, I'm trying to take full advantage of scheduling, deadlines and timestamps for my TODO lists. It's easy to add deadlines and schedule times via `C-c C-s` and `C-c C-d`. However, if I want to set a time for a meeting, I should be using a regular timestamp, rather than a SCHEDULE: property.

Re: [O] org-capture quitting and make-capture-frame

On Mon, Oct 23, 2017, at 04:03 PM, Nicolas Goaziou wrote: > > Wouldn't it make more sense to turn it into > > (message "Abort") > > ? After all, it is not an error. It also allow to call other functions, > e.g., `delete-frame' after exiting capture. > > WDYT? > I did think it was odd that

[O] org-capture quitting and make-capture-frame

Hi, I use org-capture with a new frame, so I can call it quickly when from the OS (see http://www.windley.com/archives/2010/12/capture_mode_and_emacs.shtml). This works well, except that if I quit a capture, the frame is left hanging. I looked through the code, and this is due to org-capture

Re: [O] run bash sessions without config files

On Wed, Aug 2, 2017, at 11:53 AM, Tyler Smith wrote: > > Is it possible to configure org-babel to ignore any customization files, > such as .emacs.d/init_bash.el and .bashrc? > After some digging around, it looks like this isn't possible. ~org-babel~ starts shell sessions via

[O] run bash sessions without config files

Hi, I use shell-mode a lot, and have a very complex prompt, coloured with escape codes and lots of bells and whistles. This appears to confuse org-babel when I'm running code blocks in a session, similar to what's described here:

Re: [O] exporting inline source code with listings broken by color commands

Nicolas Goaziou writes: > Hello, > > Tyler Smith <ty...@plantarum.ca> writes: > >> (setq org-latex-listings t >> org-latex-listings-options >> '(("backgroundcolor" "\\color[gray]{0.95}") > > This is incorrect. Per

[O] exporting inline source code with listings broken by color commands

When exporting an org file to pdf via latex, and using the listings package to markup source code, my inline code is not processed properly. To reproduce: emacs -Q -l minimal.el where minimal.el contains the following: ;;; Minimal setup to load latest 'org-mode' ;; activate debugging

Re: [O] [PATCH] protocol: allow users to disable warning about old style links

On Wed, Jun 21, 2017, at 12:51 PM, Mario Martelli wrote: > >>  it would make sense to suggest the >> new style syntax as the default for use by us newbies. > > yeah, thought about that too. At the moment it’s still a copy of the old doc.  > > Got no feedback so far wether my approach would be

Re: [O] [PATCH] protocol: allow users to disable warning about old style links

On Wed, Jun 21, 2017, at 12:24 PM, Tyler Smith wrote: > > whereas the new-style key-value links would be: > > javascript:location.href='org-protocol://sub-protocol?url='+ > encodeURIComponent(location.href)+'='+ > encodeURICompon

Re: [O] [PATCH] protocol: allow users to disable warning about old style links

On Wed, Jun 21, 2017, at 12:01 PM, Mario Martelli wrote: > > I have shared a proposal to move org-protocol documentation to core > documentation. > It’s mainly copied together from the old one and 9.0 NEWS. > > The important part regarding the new syntax could be found here: > >

Re: [O] [PATCH] protocol: allow users to disable warning about old style links

On Fri, Jun 16, 2017, at 02:13 AM, Nicolas Goaziou wrote: > > Wouldn't it be better to report it upstream as a bug? I don't think > there are many Org protocols applications out there and the conversion > to the new syntax is easy. I'm just starting to use org-protocol, and I'm confused by this

[O] tangling inline source code

Hello, A question came up on Stack Exchange asking about less-verbose ways to indicate code blocks: http://emacs.stackexchange.com/questions/26163/one-liner-org-source-tangle I suggested using the inline format, e.g., 'src_perl{set $variable = 1;}'. However, this is ignored when tangling the org

[O] clock tables and archived trees

Hi, I've been using clock tables to track my work, and it works pretty well. I have a journal.org file, with a different heading for each month. Under that heading is a clocktable with the :block property set to that month, and :step day. This gives me a daily summary for the month. However, if

[O] habits not working

Hi, Habits don't seem to be working for me anymore, and I'm not sure why. Steps to reproduce: emacs -Q load org mode with minimal config for habits: ;; test-org.el (require 'package) (setq package-load-list '((org-plus-contrib t))) (package-initialize) (setq org-agenda-files

Re: [O] habits not working

On Mon, Jan 4, 2016, at 09:59 AM, Dave Marquardt wrote: > Tyler Smith <ty...@plantarum.ca> writes: > > > Habits don't seem to be working for me anymore, and I'm not sure why. > > > How did I break this? > > > > Emacs version: > > GNU Emacs 25.0.5

Re: [O] org files and projects nested git repositories

Kyle Meyer writes: > > In addition to what Ken suggested, another option is to use links to > populate the agenda directory. Have a git repo for your Org notes and > agenda file (your "org" directory above), and add this directory (or one > of its subdirectories) to

Re: [O] org files and projects nested git repositories

Brenda Butler writes: > I have tried links, but in all my attempts the links break whenever the > source or the target is committed to version control. My understanding > that each new commit to a file effectively changes the inode, breaking > the link > > Sounds like you

Re: [O] org files and projects nested git repositories

Ken Mankoff writes: > > In my version of this, I have each project as its own git repository, > where git contains the Org file, other code, the manuscript, etc. I > add any Org files to my global agenda with =M-x > org-agenda-file-to-front= and remove with = M-x

[O] adding file to agenda removes directories

Hi again, Continuing to play around with getting org files into my agenda, I run into this: I set up org-agenda-files to contain ~/org/, such that all files in that directory are in my agenda. I then add an individual file from elsewhere, via org-agenda-file-to-front. In the process, the entry

[O] org files and projects nested git repositories

Hello list, I'm struggling to incorporate project-specific org files into my global org system. My file system looks something like this: ~ ├── org │ ├── todo.org │ ├── reading.org │ └── personal.org └── research ├── project1 │ ├── project1.org │ └── project1_reference.pdf

[O] customizing Agenda mode line

Hi, The major mode name displayed in the mode line for my agenda buffer is so long that it is pushing other info off the screen. Is there a cleaner way to customize this than directly editing the definition of org-agenda-set-mode-name? Thanks, Tyler --

Re: [O] org-insert-drawer completion targets

On Wed, Oct 29, 2014, at 02:10 PM, Eric Abrahamsen wrote: If you've got org-log-into-drawer set to a non-nil value, the drawer should be created automatically for you the first time you take a note on the heading (org-add-note), or switch TODO states in such a way that records a state-change

[O] org-insert-drawer completion targets

Hello, I'm trying to figure out how drawers work. I see that `C-c C-x d` provides automatic drawer insertion, and wraps around the region if active. However, `LOGBOOK` is explicitly excluded from the completion targets. However, I don't see another way to add a LOGBOOK without typing the word out

Re: [O] [ESS] Keyboard shortcut - is there a principle behind them?

Rainer M Krug rai...@krugs.de wrote: On 12/06/13, 10:49 , Oleh wrote: Now only few shortcuts are reserved for user space and plugins, the most notable of which is the `C-c` prefix. That's why most custom modes such as org-mode and ESS bind to shortcuts with `C-c` prefix: there's a convention

Re: [O] Can't export two figures in one document to odt

? What do you see if you open up the content.xml of the .odt document? Yours, Christian Moe Tyler Smith writes: Hi, I'm new to org-babel, and having trouble with exporting to .odt. The following file works. I can export to .odt no problem, the figure shows up as expected

[O] Can't export two figures in one document to odt

Hi, I'm new to org-babel, and having trouble with exporting to .odt. The following file works. I can export to .odt no problem, the figure shows up as expected: +--- #+PROPERTY: header-args:R :session rTest #+BEGIN_SRC R :results graphics :file test1.jpg :exports both plot(1:10)

[O] Bug: = symbol in url converted to %3D [7.9.3f (release_7.9.3f-17-g7524ef @ /usr/local/share/emacs/24.3.50/lisp/org/)]

{\alert}[1]{\textbf{#1}} \title{test} \author{Tyler Smith} \date{\today} \hypersetup{ pdfkeywords={}, pdfsubject={}, pdfcreator={Emacs Org-mode version 7.9.3f}} \begin{document} \maketitle \setcounter{tocdepth}{3} \tableofcontents \vspace*{1cm} \section{This is a test.} \label{sec-1} Here's

Re: [O] Bug: = symbol in url converted to %3D [7.9.3f (release_7.9.3f-17-g7524ef @ /usr/local/share/emacs/24.3.50/lisp/org/)]

Sorry, i screwed up my cut and paste there. In test.org, the link has an = sign, not %3D. Tyler Sent with AquaMail for Android http://www.aqua-mail.com On November 1, 2013 5:10:38 PM Tyler Smith ty...@plantarum.ca wrote: MWE: test.org * This is a test. A link [[http://seqanswers.com

[O] accented letters in pdf export

Hi, I'm using org 7.9.2, with the new exporter dispatcher from org-export. When I try to include accented letters, such as \'e, they don't work. When I export to pdf using C-c C-e p, the resulting tex file shows $\backslash$'e where I had \'e in the org file. Other macros, like \alpha, work fine.

[O] org-goto bug

Hi, According to the manual, and the help window that pops up when you call it, org-goto should accept a few one-letter commands to move up one level (u), quit (q), move to the next (n) or previous(p) heading. However, whenever I try any of these keys, they are interpreted as the search string

[O] syncing with google calendar, file changed on disk

Hi, Following the instructions from Worg ( http://orgmode.org/worg/org-tutorials/org-google-sync.html ), I've set a cron job to download my google calendar, and use Eric Fraga's awk script to convert it into google.org for inclusion in my agenda. This works fine, and is currently my only syncing

[O] documentation bug

Hi, I'm using org-mode 7.8.03, which shipped with Emacs 24.0.94.1. The documentation for exporting html includes the following: 12.5.1 HTML export commands --- `C-c C-e h (`org-export-as-html')' Export as HTML file. [...] If there is an active region(1), only

[O] syncing with google calendar, file changed on disk

Hi, Following the instructions from Worg ( http://orgmode.org/worg/org-tutorials/org-google-sync.html ), I've set a cron job to download my google calendar, and use Eric Fraga's awk script to convert it into google.org for inclusion in my agenda. This works fine, and is currently my only syncing

[Orgmode] problem with remember template

Hi, I'm having trouble with a remember template. My template definitions are: (setq org-remember-templates '((Todo ?t * TODO %^{Brief Description} %^G\n%?Added: %U ~/org/todo.org Tasks) (Notes ?n ** %^{Head Line} %U %^G\n%i%? ~/org/notes.org

[Orgmode] Scheduling bug? [was: problem with remember template]

23.1.90.2 Thanks, Tyler Tyler Smith tyler.sm...@eku.edu writes: Hi, I'm having trouble with a remember template. My template definitions are: (setq org-remember-templates '((Todo ?t * TODO %^{Brief Description} %^G\n%?Added: %U ~/org/todo.org Tasks) (Notes ?n

[Orgmode] Re: Scheduling bug?

Mikael Fornius m...@abc.se writes: As you found out the problem is fixed in later versions of emacs, thanks for telling! Sorry, you misunderstood. It's fixed in an earlier version (23), but broken in the later version (24). Tyler ___ Emacs-orgmode

[Orgmode] Re: Scheduling bug?

Mikael Fornius m...@abc.se writes: I was wrong it does work for me with this fresh from today setup: GNU Emacs 24.0.50.2 (i686-pc-linux-gnu, GTK+ Version 2.20.1) of 2010-06-01 on eee Org-mode version 6.36trans (release_6.36.141.gbc53b) (earlier I forgot to load the latest org-mode from

[Orgmode] Re: Gmane readers - please subscribe

Ben Finney ben+em...@benfinney.id.au writes: Carsten Dominik carsten.domi...@gmail.com writes: If you are reading emacs-orgmode.org through gmane, please read this new FAQ to help take load off the maintainers. http://orgmode.org/worg/org-faq.php#ml-subscription-and-gmane A large part of

[Orgmode] Re: s in agenda saves all org-mode buffers, does not mark entry for bulk action

Markus Heller helle...@gmail.com writes: I'm using org-mode version 6.34a on Windoze XP end emacs 23.1.1. In any agenda view, pressing s saves all org mode buffers and does not mark the item for bulk action. I went through my .emacs and couldn't find anything that looked like re-defining a

[Orgmode] Re: s in agenda saves all org-mode buffers, does not mark entry for bulk action

Markus Heller helle...@gmail.com writes: On 2/4/2010 3:41 PM, Tyler Smith wrote: Markus Hellerhelle...@gmail.com writes: I'm using org-mode version 6.34a on Windoze XP end emacs 23.1.1. In any agenda view, pressing s saves all org mode buffers and does not mark the item for bulk action. I